Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003467

Physical Location & Seq

Genomic Coordinates Reverse (-)

1459682 .. 1460734

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0009300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCTTGCAACGAAAGAAATAAAAGGAGATTAGAACTTCCCTTTGATTCCATTGTTGAGATTTTGAGTTGGCTGCCAGTCAAGTCTTTGCTAAGGTTCAAGTGCGTGTGCAAGCGATGGTGTTCCTTGATTCAAGATTACAATTTCATACTCAAAAATATGGATCGGACAAGTACAATGCTGCTCTTTTATCCTTGCAAATCCCATGATGAAAATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTGCTAGTAATTCGACAGTTTTTCGTATCAGAAACCCCGCGACTCACCAAGTGCTATACTTGCCTGATCCACCTCCATATACTTCATCAGTAGACTTTGCTTTTAACTCATTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCATTGGAAAAGATGAGCAGTGGAGACCCTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAAGGGTGTTTAGAGGATGTTACTCTAAGGTTGAAGGGGTTTGTCATTTGTTTCAAATTATTAGGTTTACTGATCAAGAAGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTAGACTGGAATGAAGTTAGTGTTGTTCTTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCTTGGTGTTACAAGACTATAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGCCAAAAAAGAACGACGGTCGTCCAAAATTTGCGAAGGAAATAACAAAAATTCCTTCTACCGAATTTGATTTGCATATCAATGATGAAGGGGACTATAGACTTTCATCTGTCAGGAAAGAGGAGATGAGAGAGACTGGGGAGATATTACATAAGCCAAGCCTGGTAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTATTACCCTAAGAATGAAGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endonuclease_1

Protein Analysis

350

Amino Acids

40.91

Weight (kDa)

7.47

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	11 - 50	4.7e-11	F-box domain
F-box-like	PF12937	12 - 46	6.4e-08	F-box-like
FBA_3	PF08268	66 - 275	2.3e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003467)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06651 FvH4_4g06651 FvH4_4g06651 FvH4_4g06651
malus_domestica	MD16G1242000.v1.1 MD16G1242100.v1.1
prunus_persica	Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1 Prupe.1G068900_v2.0.a1
pyrus_communis	pycom16g20290
rosa_chinensis	RchiOBHm_Chr4g0398551
rosa_laevigata	RLG00000009345
rosa_multiflora	Rmu_sc0031448.1_g000001
rosa_roxburghii	Rroxscaffold_5G00343520
rosa_rugosa	Rorug04G0009300
rosa_samantha	Rh4AG087100 Rh4BG083800 Rh4CG095300 Rh4DG078700
rosa_wichuraiana	Rw4G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AccB7I	CCANNNNNTGG	1 cut(s)	1022
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	1 cut(s)	299
AciI	CCGC	2 cut(s)	297, 432
AclWI	GGATC	2 cut(s)	171, 320
AcsI	RAATTY	4 cut(s)	214, 854, 876, 890
AdeI	CACNNNGTG	1 cut(s)	310
AfaI	GTAC	2 cut(s)	175, 611
AfiI	CCNNNNNNNGG	4 cut(s)	687, 824, 825, 1022
AgsI	TTSAA	7 cut(s)	100, 134, 231, 448, 554, 575, 623
AjnI	CCWGG	2 cut(s)	669, 987
AluBI	AGCT	3 cut(s)	412, 493, 511
AluI	AGCT	3 cut(s)	412, 493, 511
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	2 cut(s)	475, 953
AlwI	GGATC	2 cut(s)	171, 320
AoxI	GGCC	1 cut(s)	827
ApeKI	GCWGC	3 cut(s)	73, 181, 434
ApoI	RAATTY	4 cut(s)	214, 854, 876, 890
ArsI	GACNNNNNNTTYG	2 cut(s)	781, 813
AspS9I	GGNCC	1 cut(s)	827
AsuHPI	GGTGA	2 cut(s)	296, 389
BanII	GRGCYC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	60, 168, 421
BccI	CCATC	1 cut(s)	111
BciT130I	CCWGG	2 cut(s)	671, 989
BclI	TGATCA	2 cut(s)	592, 807
BcoDI	GTCTC	2 cut(s)	475, 953
BfaI	CTAG	2 cut(s)	264, 614
BfmI	CTRYAG	1 cut(s)	922
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	3 cut(s)	74, 182, 435
BlsI	GCNGC	3 cut(s)	75, 183, 436
Bme1390I	CCNGG	2 cut(s)	671, 989
BmgT120I	GGNCC	1 cut(s)	827
BmrFI	CCNGG	2 cut(s)	671, 989
BmrI	ACTGGG	1 cut(s)	972
BmsI	GCATC	1 cut(s)	1002
BmuI	ACTGGG	1 cut(s)	972
BoxI	GACNNNNGTC	1 cut(s)	846
Bpu10I	CCTNAGC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	669, 670
Bsc4I	CCNNNNNNNGG	4 cut(s)	687, 824, 825, 1022
Bse1I	ACTGG	4 cut(s)	77, 379, 692, 967
BseBI	CCWGG	2 cut(s)	671, 989
BseDI	CCNNGG	2 cut(s)	669, 670
BseGI	GGATG	1 cut(s)	542
BseLI	CCNNNNNNNGG	4 cut(s)	687, 824, 825, 1022
BseNI	ACTGG	4 cut(s)	77, 379, 692, 967
BseRI	GAGGAG	1 cut(s)	962
BseXI	GCAGC	3 cut(s)	60, 168, 421
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	847
BshFI	GGCC	1 cut(s)	829
BsiEI	CGRYCG	1 cut(s)	847
BsiHKAI	GWGCWC	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	413, 932
BslI	CCNNNNNNNGG	4 cut(s)	687, 824, 825, 1022
BsmAI	GTCTC	2 cut(s)	475, 953
BsmFI	GGGAC	2 cut(s)	413, 932
BsnI	GGCC	1 cut(s)	829
Bso31I	GGTCTC	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	5 cut(s)	163, 325, 592, 631, 807
BspACI	CCGC	2 cut(s)	297, 432
BspANI	GGCC	1 cut(s)	829
BspFNI	CGCG	1 cut(s)	299
BspPI	GGATC	2 cut(s)	171, 320
BspTNI	GGTCTC	1 cut(s)	475
BsrI	ACTGG	4 cut(s)	77, 379, 692, 967
BssECI	CCNNGG	2 cut(s)	669, 670
BssMI	GATC	5 cut(s)	163, 325, 592, 631, 807
Bst2UI	CCWGG	2 cut(s)	671, 989
Bst4CI	ACNGT	2 cut(s)	277, 845
Bst6I	CTCTTC	2 cut(s)	251, 669
BstC8I	GCNNGC	2 cut(s)	113, 241
BstDEI	CTNAG	5 cut(s)	92, 487, 546, 682, 1035
BstF5I	GGATG	1 cut(s)	542
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	5 cut(s)	166, 328, 595, 634, 810
BstMAI	GTCTC	2 cut(s)	475, 953
BstMBI	GATC	5 cut(s)	163, 325, 592, 631, 807
BstMCI	CGRYCG	1 cut(s)	847
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	2 cut(s)	671, 989
BstPAI	GACNNNNGTC	1 cut(s)	846
BstSCI	CCNGG	2 cut(s)	669, 987
BstSFI	CTRYAG	1 cut(s)	922
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	3 cut(s)	60, 168, 421
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	829
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	542
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	372, 482
Cac8I	GCNNGC	2 cut(s)	113, 241
Cfr13I	GGNCC	1 cut(s)	827
Csp6I	GTAC	2 cut(s)	174, 610
CviAII	CATG	2 cut(s)	206, 805
CviJI	RGCY	8 cut(s)	73, 243, 412, 493, 511, 829, 982, 987
CviKI_1	RGCY	8 cut(s)	73, 243, 412, 493, 511, 829, 982, 987
CviQI	GTAC	2 cut(s)	174, 610
DdeI	CTNAG	5 cut(s)	92, 487, 546, 682, 1035
DpnI	GATC	5 cut(s)	165, 327, 594, 633, 809
DpnII	GATC	5 cut(s)	163, 325, 592, 631, 807
DraI	TTTAAA	1 cut(s)	420
DraIII	CACNNNGTG	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	251, 669
EarI	CTCTTC	2 cut(s)	251, 669
Ecl136II	GAGCTC	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	475
Eco53kI	GAGCTC	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	669, 987
EcoT38I	GRGCYC	1 cut(s)	495
FaeI	CATG	2 cut(s)	209, 808
FaqI	GGGAC	2 cut(s)	413, 932
FatI	CATG	2 cut(s)	205, 804
FauI	CCCGC	2 cut(s)	304, 439
FbaI	TGATCA	2 cut(s)	592, 807
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	74, 182, 435
FokI	GGATG	1 cut(s)	549
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	3 cut(s)	74, 182, 435
FspBI	CTAG	2 cut(s)	264, 614
GluI	GCNGC	3 cut(s)	74, 182, 435
HaeIII	GGCC	1 cut(s)	829
Hin1II	CATG	2 cut(s)	209, 808
HinfI	GANTC	6 cut(s)	47, 130, 301, 444, 749, 796
HphI	GGTGA	2 cut(s)	296, 389
Hpy166II	GTNNAC	3 cut(s)	352, 588, 644
Hpy188I	TCNGA	2 cut(s)	168, 290
Hpy188III	TCNNGA	3 cut(s)	134, 596, 940
Hpy8I	GTNNAC	3 cut(s)	352, 588, 644
Hpy99I	CGWCG	1 cut(s)	845
HpyAV	CCTTC	5 cut(s)	548, 856, 891, 908, 1037
HpyCH4III	ACNGT	2 cut(s)	277, 845
HpyCH4V	TGCA	6 cut(s)	9, 111, 198, 239, 437, 901
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	5 cut(s)	92, 487, 546, 682, 1035
Hsp92II	CATG	2 cut(s)	209, 808
Ksp22I	TGATCA	2 cut(s)	592, 807
Kzo9I	GATC	5 cut(s)	163, 325, 592, 631, 807
LmnI	GCTCC	2 cut(s)	498, 784
Lsp1109I	GCAGC	3 cut(s)	60, 168, 421
LweI	GCATC	1 cut(s)	1002
MaeI	CTAG	2 cut(s)	264, 614
MaeIII	GTNAC	2 cut(s)	539, 768
MalI	GATC	5 cut(s)	165, 327, 594, 633, 809
MboI	GATC	5 cut(s)	163, 325, 592, 631, 807
MboII	GAAGA	4 cut(s)	268, 611, 614, 656
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	7 cut(s)	142, 214, 268, 576, 854, 876, 890
MlyI	GAGTC	2 cut(s)	295, 805
MnlI	CCTC	5 cut(s)	342, 527, 739, 770, 940
MseI	TTAA	3 cut(s)	363, 419, 999
MslI	CAYNNNNRTG	1 cut(s)	906
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	671, 989
MvaI	CCWGG	2 cut(s)	671, 989
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	319
NdeII	GATC	5 cut(s)	163, 325, 592, 631, 807
NlaIII	CATG	2 cut(s)	209, 808
PasI	CCCWGGG	1 cut(s)	670
PfeI	GAWTC	4 cut(s)	47, 130, 444, 749
PflMI	CCANNNNNTGG	1 cut(s)	1022
PkrI	GCNGC	3 cut(s)	75, 183, 436
PleI	GAGTC	2 cut(s)	295, 804
PpsI	GAGTC	2 cut(s)	295, 804
PshAI	GACNNNNGTC	1 cut(s)	846
PsiI	TTATAA	1 cut(s)	455
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	669, 987
PspGI	CCWGG	2 cut(s)	669, 987
PspPI	GGNCC	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	2 cut(s)	175, 611
RsaNI	GTAC	2 cut(s)	174, 610
RseI	CAYNNNNRTG	1 cut(s)	906
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	363, 419, 999
SatI	GCNGC	3 cut(s)	74, 182, 435
Sau3AI	GATC	5 cut(s)	163, 325, 592, 631, 807
Sau96I	GGNCC	1 cut(s)	827
SchI	GAGTC	2 cut(s)	295, 805
ScrFI	CCNGG	2 cut(s)	671, 989
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	1 cut(s)	1002
SfcI	CTRYAG	1 cut(s)	922
SmiI	ATTTAAAT	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	906
Sse9I	AATT	7 cut(s)	142, 214, 268, 576, 854, 876, 890
SsiI	CCGC	2 cut(s)	297, 432
SspMI	CTAG	2 cut(s)	264, 614
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	669, 987
SwaI	ATTTAAAT	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	277, 845
TaqI	TCGA	1 cut(s)	272
TasI	AATT	7 cut(s)	142, 214, 268, 576, 854, 876, 890
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	4 cut(s)	47, 130, 444, 749
Tru1I	TTAA	3 cut(s)	363, 419, 999
Tru9I	TTAA	3 cut(s)	363, 419, 999
TscAI	CASTG	2 cut(s)	379, 482
TseI	GCWGC	3 cut(s)	73, 181, 434
TspDTI	ATGAA	7 cut(s)	136, 225, 333, 708, 755, 921, 927
TspRI	CASTG	2 cut(s)	379, 482
Van91I	CCANNNNNTGG	1 cut(s)	1022
XapI	RAATTY	4 cut(s)	214, 854, 876, 890
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	2 cut(s)	264, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.