Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD13G1237500.v1.1 |
| prunus_persica | Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 |
| pyrus_communis | pycom13g21030 |
| rosa_chinensis | RchiOBHm_Chr6g0270531 |
| rosa_laevigata | RLG00000013780 |
| rosa_multiflora | Rmu_sc0004171.1_g000004 Rmu_sc0004477.1_g000003 Rmu_sc0036767.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00197760 Rroxscaffold_7G00197840 |
| rosa_rugosa | Rorug06G0055300 Rorug06G0055400 Rorug06G0055500 |
| rosa_samantha | Rh6AG174500 Rh6BG177700 Rh6CG173700 Rh6DG166100 |
| rosa_wichuraiana | Rw6G014840 Rw6G014870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 208 |
| Acc16I | TGCGCA | 1 cut(s) | 711 |
| Acc65I | GGTACC | 1 cut(s) | 224 |
| AccB1I | GGYRCC | 1 cut(s) | 224 |
| AciI | CCGC | 4 cut(s) | 594, 717, 941, 2148 |
| AclWI | GGATC | 1 cut(s) | 2432 |
| AcsI | RAATTY | 7 cut(s) | 470, 530, 826, 878, 1452, 1529, 1649 |
| AcuI | CTGAAG | 4 cut(s) | 873, 1035, 1130, 2361 |
| AfaI | GTAC | 8 cut(s) | 226, 302, 511, 886, 917, 2310, 2319, 2400 |
| AflII | CTTAAG | 1 cut(s) | 803 |
| AhlI | ACTAGT | 1 cut(s) | 512 |
| AjnI | CCWGG | 3 cut(s) | 1340, 1995, 2124 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 462, 494, 1958, 1990, 2240, 2272 |
| AleI | CACNNNNGTG | 1 cut(s) | 2006 |
| AluBI | AGCT | 7 cut(s) | 9, 1190, 1203, 1506, 1673, 1949, 2024 |
| AluI | AGCT | 7 cut(s) | 9, 1190, 1203, 1506, 1673, 1949, 2024 |
| Alw21I | GWGCWC | 3 cut(s) | 815, 1927, 2032 |
| Alw26I | GTCTC | 3 cut(s) | 194, 1568, 1665 |
| AlwI | GGATC | 1 cut(s) | 2432 |
| AoxI | GGCC | 4 cut(s) | 461, 724, 1998, 2201 |
| ApeKI | GCWGC | 4 cut(s) | 182, 392, 1704, 2021 |
| ApoI | RAATTY | 7 cut(s) | 470, 530, 826, 878, 1452, 1529, 1649 |
| AseI | ATTAAT | 1 cut(s) | 443 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 470, 953 |
| Asp718I | GGTACC | 1 cut(s) | 224 |
| AspLEI | GCGC | 1 cut(s) | 712 |
| AspS9I | GGNCC | 2 cut(s) | 778, 2217 |
| AsuC2I | CCSGG | 1 cut(s) | 1309 |
| AsuHPI | GGTGA | 3 cut(s) | 335, 778, 1898 |
| AsuNHI | GCTAGC | 1 cut(s) | 1063 |
| AvaII | GGWCC | 2 cut(s) | 778, 2217 |
| BanI | GGYRCC | 1 cut(s) | 224 |
| BbsI | GAAGAC | 2 cut(s) | 1000, 1023 |
| Bbv12I | GWGCWC | 3 cut(s) | 815, 1927, 2032 |
| BbvI | GCAGC | 4 cut(s) | 169, 379, 1716, 2033 |
| BccI | CCATC | 5 cut(s) | 320, 398, 748, 868, 2086 |
| BceAI | ACGGC | 1 cut(s) | 380 |
| BciT130I | CCWGG | 3 cut(s) | 1342, 1997, 2126 |
| BciVI | GTATCC | 3 cut(s) | 957, 2144, 2232 |
| BclI | TGATCA | 3 cut(s) | 291, 858, 1911 |
| BcnI | CCSGG | 1 cut(s) | 1309 |
| BcoDI | GTCTC | 3 cut(s) | 194, 1568, 1665 |
| BcuI | ACTAGT | 1 cut(s) | 512 |
| BfaI | CTAG | 7 cut(s) | 513, 921, 1064, 1224, 1616, 2051, 2166 |
| BfrI | CTTAAG | 1 cut(s) | 803 |
| BfuI | GTATCC | 3 cut(s) | 957, 2144, 2232 |
| BglII | AGATCT | 1 cut(s) | 1880 |
| BisI | GCNGC | 7 cut(s) | 183, 393, 595, 718, 942, 1705, 2022 |
| BlsI | GCNGC | 7 cut(s) | 184, 394, 596, 719, 943, 1706, 2023 |
| BmcAI | AGTACT | 1 cut(s) | 886 |
| Bme1390I | CCNGG | 4 cut(s) | 1309, 1342, 1997, 2126 |
| Bme18I | GGWCC | 2 cut(s) | 778, 2217 |
| BmgT120I | GGNCC | 2 cut(s) | 778, 2217 |
| BmiI | GGNNCC | 3 cut(s) | 226, 2097, 2295 |
| BmrFI | CCNGG | 4 cut(s) | 1309, 1342, 1997, 2126 |
| BmsI | GCATC | 5 cut(s) | 928, 1630, 1810, 2152, 2350 |
| BmtI | GCTAGC | 1 cut(s) | 1067 |
| BpiI | GAAGAC | 2 cut(s) | 1000, 1023 |
| BpmI | CTGGAG | 2 cut(s) | 1384, 2280 |
| Bpu10I | CCTNAGC | 1 cut(s) | 10 |
| BpuEI | CTTGAG | 2 cut(s) | 476, 1640 |
| BpuMI | CCSGG | 1 cut(s) | 1309 |
| BsaJI | CCNNGG | 4 cut(s) | 220, 1138, 1489, 2198 |
| Bse1I | ACTGG | 3 cut(s) | 781, 1545, 1870 |
| Bse3DI | GCAATG | 1 cut(s) | 719 |
| BseBI | CCWGG | 3 cut(s) | 1342, 1997, 2126 |
| BseDI | CCNNGG | 4 cut(s) | 220, 1138, 1489, 2198 |
| BseGI | GGATG | 4 cut(s) | 861, 943, 1549, 1863 |
| BseMI | GCAATG | 1 cut(s) | 719 |
| BseMII | CTCAG | 5 cut(s) | 189, 1655, 2094, 2097, 2204 |
| BseNI | ACTGG | 3 cut(s) | 781, 1545, 1870 |
| BseXI | GCAGC | 4 cut(s) | 169, 379, 1716, 2033 |
| BseYI | CCCAGC | 1 cut(s) | 1991 |
| BsgI | GTGCAG | 2 cut(s) | 522, 1830 |
| BshFI | GGCC | 4 cut(s) | 463, 726, 2000, 2203 |
| BshNI | GGYRCC | 1 cut(s) | 224 |
| BsiHKAI | GWGCWC | 3 cut(s) | 815, 1927, 2032 |
| BsiSI | CCGG | 1 cut(s) | 1308 |
| BslFI | GGGAC | 3 cut(s) | 1379, 1612, 1641 |
| BsmAI | GTCTC | 3 cut(s) | 194, 1568, 1665 |
| BsmFI | GGGAC | 3 cut(s) | 1379, 1612, 1641 |
| BsmI | GAATGC | 3 cut(s) | 904, 1707, 2190 |
| BsnI | GGCC | 4 cut(s) | 463, 726, 2000, 2203 |
| Bsp1286I | GDGCHC | 3 cut(s) | 815, 1927, 2032 |
| Bsp143I | GATC | 8 cut(s) | 291, 384, 858, 1129, 1880, 1911, 2047, 2424 |
| Bsp19I | CCATGG | 1 cut(s) | 1489 |
| BspACI | CCGC | 4 cut(s) | 594, 717, 941, 2148 |
| BspANI | GGCC | 4 cut(s) | 463, 726, 2000, 2203 |
| BspCNI | CTCAG | 5 cut(s) | 190, 1656, 2093, 2098, 2205 |
| BspLI | GGNNCC | 3 cut(s) | 226, 2097, 2295 |
| BspOI | GCTAGC | 1 cut(s) | 1067 |
| BspPI | GGATC | 1 cut(s) | 2432 |
| BspQI | GCTCTTC | 1 cut(s) | 139 |
| BspT107I | GGYRCC | 1 cut(s) | 224 |
| BspTI | CTTAAG | 1 cut(s) | 803 |
| BsrDI | GCAATG | 1 cut(s) | 719 |
| BsrI | ACTGG | 3 cut(s) | 781, 1545, 1870 |
| BssECI | CCNNGG | 4 cut(s) | 220, 1138, 1489, 2198 |
| BssMI | GATC | 8 cut(s) | 291, 384, 858, 1129, 1880, 1911, 2047, 2424 |
| BssT1I | CCWWGG | 4 cut(s) | 220, 1138, 1489, 2198 |
| Bst2UI | CCWGG | 3 cut(s) | 1342, 1997, 2126 |
| Bst4CI | ACNGT | 1 cut(s) | 2325 |
| Bst6I | CTCTTC | 3 cut(s) | 139, 1640, 2337 |
| BstAFI | CTTAAG | 1 cut(s) | 803 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2027 |
| BstC8I | GCNNGC | 4 cut(s) | 1065, 1249, 1735, 2205 |
| BstDSI | CCRYGG | 1 cut(s) | 1489 |
| BstF5I | GGATG | 4 cut(s) | 861, 943, 1549, 1863 |
| BstHHI | GCGC | 1 cut(s) | 712 |
| BstKTI | GATC | 8 cut(s) | 294, 387, 861, 1132, 1883, 1914, 2050, 2427 |
| BstMAI | GTCTC | 3 cut(s) | 194, 1568, 1665 |
| BstMBI | GATC | 8 cut(s) | 291, 384, 858, 1129, 1880, 1911, 2047, 2424 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 86, 138, 591, 723, 1730, 2027 |
| BstNI | CCWGG | 3 cut(s) | 1342, 1997, 2126 |
| BstNSI | RCATGY | 1 cut(s) | 613 |
| BstSCI | CCNGG | 4 cut(s) | 1307, 1340, 1995, 2124 |
| BstV1I | GCAGC | 4 cut(s) | 169, 379, 1716, 2033 |
| BstV2I | GAAGAC | 2 cut(s) | 1000, 1023 |
| BstX2I | RGATCY | 1 cut(s) | 1880 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1408, 1915 |
| BstYI | RGATCY | 1 cut(s) | 1880 |
| BsuI | GTATCC | 3 cut(s) | 957, 2144, 2232 |
| BsuRI | GGCC | 4 cut(s) | 463, 726, 2000, 2203 |
| BtgI | CCRYGG | 1 cut(s) | 1489 |
| BtsCI | GGATG | 4 cut(s) | 861, 943, 1549, 1863 |
| BtsI | GCAGTG | 2 cut(s) | 490, 993 |
| BtsIMutI | CAGTG | 2 cut(s) | 490, 993 |
| Cac8I | GCNNGC | 4 cut(s) | 1065, 1249, 1735, 2205 |
| CfoI | GCGC | 1 cut(s) | 712 |
| Cfr13I | GGNCC | 2 cut(s) | 778, 2217 |
| Csp6I | GTAC | 8 cut(s) | 225, 301, 510, 885, 916, 2309, 2318, 2399 |
| CviQI | GTAC | 8 cut(s) | 225, 301, 510, 885, 916, 2309, 2318, 2399 |
| DpnI | GATC | 8 cut(s) | 293, 386, 860, 1131, 1882, 1913, 2049, 2426 |
| DpnII | GATC | 8 cut(s) | 291, 384, 858, 1129, 1880, 1911, 2047, 2424 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 208 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 208 |
| Eam1104I | CTCTTC | 3 cut(s) | 139, 1640, 2337 |
| EarI | CTCTTC | 3 cut(s) | 139, 1640, 2337 |
| Eco130I | CCWWGG | 4 cut(s) | 220, 1138, 1489, 2198 |
| Eco32I | GATATC | 1 cut(s) | 1608 |
| Eco47I | GGWCC | 2 cut(s) | 778, 2217 |
| Eco57I | CTGAAG | 4 cut(s) | 873, 1035, 1130, 2361 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2217 |
| EcoRI | GAATTC | 1 cut(s) | 470 |
| EcoRII | CCWGG | 3 cut(s) | 1340, 1995, 2124 |
| EcoRV | GATATC | 1 cut(s) | 1608 |
| EcoT14I | CCWWGG | 4 cut(s) | 220, 1138, 1489, 2198 |
| ErhI | CCWWGG | 4 cut(s) | 220, 1138, 1489, 2198 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1463, 1495 |
| FaqI | GGGAC | 3 cut(s) | 1379, 1612, 1641 |
| FauNDI | CATATG | 2 cut(s) | 526, 2005 |
| FbaI | TGATCA | 3 cut(s) | 291, 858, 1911 |
| Fnu4HI | GCNGC | 7 cut(s) | 183, 393, 595, 718, 942, 1705, 2022 |
| FokI | GGATG | 4 cut(s) | 848, 950, 1556, 1870 |
| Fsp4HI | GCNGC | 7 cut(s) | 183, 393, 595, 718, 942, 1705, 2022 |
| FspBI | CTAG | 7 cut(s) | 513, 921, 1064, 1224, 1616, 2051, 2166 |
| FspI | TGCGCA | 1 cut(s) | 711 |
| GlaI | GCGC | 1 cut(s) | 711 |
| GluI | GCNGC | 7 cut(s) | 183, 393, 595, 718, 942, 1705, 2022 |
| GsaI | CCCAGC | 1 cut(s) | 1995 |
| GsuI | CTGGAG | 2 cut(s) | 1384, 2280 |
| HaeIII | GGCC | 4 cut(s) | 463, 726, 2000, 2203 |
| HapII | CCGG | 1 cut(s) | 1308 |
| HhaI | GCGC | 1 cut(s) | 712 |
| Hin6I | GCGC | 1 cut(s) | 710 |
| HinP1I | GCGC | 1 cut(s) | 710 |
| HindIII | AAGCTT | 1 cut(s) | 7 |
| HinfI | GANTC | 7 cut(s) | 635, 656, 1176, 1547, 1589, 2069, 2084 |
| HpaII | CCGG | 1 cut(s) | 1308 |
| HphI | GGTGA | 3 cut(s) | 335, 778, 1898 |
| Hpy166II | GTNNAC | 4 cut(s) | 510, 786, 2335, 2399 |
| Hpy188III | TCNNGA | 8 cut(s) | 671, 865, 921, 1180, 1224, 1937, 2142, 2297 |
| Hpy8I | GTNNAC | 4 cut(s) | 510, 786, 2335, 2399 |
| HpyAV | CCTTC | 5 cut(s) | 91, 733, 928, 1405, 2174 |
| HpyCH4III | ACNGT | 1 cut(s) | 2325 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 86, 138, 591, 723, 1730, 2027 |
| HspAI | GCGC | 1 cut(s) | 710 |
| KpnI | GGTACC | 1 cut(s) | 228 |
| Ksp22I | TGATCA | 3 cut(s) | 291, 858, 1911 |
| Kzo9I | GATC | 8 cut(s) | 291, 384, 858, 1129, 1880, 1911, 2047, 2424 |
| LguI | GCTCTTC | 1 cut(s) | 139 |
| LmnI | GCTCC | 1 cut(s) | 2299 |
| Lsp1109I | GCAGC | 4 cut(s) | 169, 379, 1716, 2033 |
| LweI | GCATC | 5 cut(s) | 928, 1630, 1810, 2152, 2350 |
| MaeI | CTAG | 7 cut(s) | 513, 921, 1064, 1224, 1616, 2051, 2166 |
| MaeIII | GTNAC | 3 cut(s) | 367, 1087, 1390 |
| MalI | GATC | 8 cut(s) | 293, 386, 860, 1131, 1882, 1913, 2049, 2426 |
| MboI | GATC | 8 cut(s) | 291, 384, 858, 1129, 1880, 1911, 2047, 2424 |
| MboII | GAAGA | 8 cut(s) | 126, 1000, 1028, 1357, 1627, 2171, 2354, 2369 |
| MflI | RGATCY | 1 cut(s) | 1880 |
| MhlI | GDGCHC | 3 cut(s) | 815, 1927, 2032 |
| MlyI | GAGTC | 1 cut(s) | 665 |
| MmeI | TCCRAC | 5 cut(s) | 133, 603, 665, 2216, 2402 |
| MroXI | GAANNNNTTC | 2 cut(s) | 470, 953 |
| MseI | TTAA | 8 cut(s) | 443, 795, 804, 1283, 1511, 1515, 1527, 1745 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1494, 1775, 1913, 2006 |
| MspCI | CTTAAG | 1 cut(s) | 803 |
| MspI | CCGG | 1 cut(s) | 1308 |
| MspR9I | CCNGG | 4 cut(s) | 1309, 1342, 1997, 2126 |
| Mva1269I | GAATGC | 3 cut(s) | 904, 1707, 2190 |
| MvaI | CCWGG | 3 cut(s) | 1342, 1997, 2126 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 86, 138, 591, 723, 1730, 2027 |
| NciI | CCSGG | 1 cut(s) | 1309 |
| NcoI | CCATGG | 1 cut(s) | 1489 |
| NdeI | CATATG | 2 cut(s) | 526, 2005 |
| NdeII | GATC | 8 cut(s) | 291, 384, 858, 1129, 1880, 1911, 2047, 2424 |
| NheI | GCTAGC | 1 cut(s) | 1063 |
| NlaIV | GGNNCC | 3 cut(s) | 226, 2097, 2295 |
| NmeAIII | GCCGAG | 1 cut(s) | 368 |
| NmuCI | GTSAC | 2 cut(s) | 367, 1087 |
| NsbI | TGCGCA | 1 cut(s) | 711 |
| NspI | RCATGY | 1 cut(s) | 613 |
| OliI | CACNNNNGTG | 1 cut(s) | 2006 |
| PacI | TTAATTAA | 1 cut(s) | 1515 |
| PciSI | GCTCTTC | 1 cut(s) | 139 |
| PctI | GAATGC | 3 cut(s) | 904, 1707, 2190 |
| PdmI | GAANNNNTTC | 2 cut(s) | 470, 953 |
| PfeI | GAWTC | 6 cut(s) | 635, 1176, 1547, 1589, 2069, 2084 |
| PkrI | GCNGC | 7 cut(s) | 184, 394, 596, 719, 943, 1706, 2023 |
| PleI | GAGTC | 1 cut(s) | 664 |
| PpsI | GAGTC | 1 cut(s) | 664 |
| PpuMI | RGGWCCY | 1 cut(s) | 2217 |
| PshBI | ATTAAT | 1 cut(s) | 443 |
| Psp5II | RGGWCCY | 1 cut(s) | 2217 |
| Psp6I | CCWGG | 3 cut(s) | 1340, 1995, 2124 |
| PspFI | CCCAGC | 1 cut(s) | 1991 |
| PspGI | CCWGG | 3 cut(s) | 1340, 1995, 2124 |
| PspN4I | GGNNCC | 3 cut(s) | 226, 2097, 2295 |
| PspPI | GGNCC | 2 cut(s) | 778, 2217 |
| PspPPI | RGGWCCY | 1 cut(s) | 2217 |
| PsuI | RGATCY | 1 cut(s) | 1880 |
| RsaI | GTAC | 8 cut(s) | 226, 302, 511, 886, 917, 2310, 2319, 2400 |
| RsaNI | GTAC | 8 cut(s) | 225, 301, 510, 885, 916, 2309, 2318, 2399 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1494, 1775, 1913, 2006 |
| SapI | GCTCTTC | 1 cut(s) | 139 |
| SaqAI | TTAA | 8 cut(s) | 443, 795, 804, 1283, 1511, 1515, 1527, 1745 |
| SatI | GCNGC | 7 cut(s) | 183, 393, 595, 718, 942, 1705, 2022 |
| Sau3AI | GATC | 8 cut(s) | 291, 384, 858, 1129, 1880, 1911, 2047, 2424 |
| Sau96I | GGNCC | 2 cut(s) | 778, 2217 |
| ScaI | AGTACT | 1 cut(s) | 886 |
| SchI | GAGTC | 1 cut(s) | 665 |
| ScrFI | CCNGG | 4 cut(s) | 1309, 1342, 1997, 2126 |
| SduI | GDGCHC | 3 cut(s) | 815, 1927, 2032 |
| SfaNI | GCATC | 5 cut(s) | 928, 1630, 1810, 2152, 2350 |
| SinI | GGWCC | 2 cut(s) | 778, 2217 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1494, 1775, 1913, 2006 |
| SmlI | CTYRAG | 3 cut(s) | 491, 803, 1655 |
| SmoI | CTYRAG | 3 cut(s) | 491, 803, 1655 |
| SpeI | ACTAGT | 1 cut(s) | 512 |
| SsiI | CCGC | 4 cut(s) | 594, 717, 941, 2148 |
| SspMI | CTAG | 7 cut(s) | 513, 921, 1064, 1224, 1616, 2051, 2166 |
| StyD4I | CCNGG | 4 cut(s) | 1307, 1340, 1995, 2124 |
| StyI | CCWWGG | 4 cut(s) | 220, 1138, 1489, 2198 |
| TaaI | ACNGT | 1 cut(s) | 2325 |
| TaqI | TCGA | 4 cut(s) | 729, 1638, 2157, 2427 |
| TatI | WGTACW | 5 cut(s) | 509, 884, 915, 2317, 2398 |
| TauI | GCSGC | 3 cut(s) | 597, 720, 944 |
| TfiI | GAWTC | 6 cut(s) | 635, 1176, 1547, 1589, 2069, 2084 |
| Tru1I | TTAA | 8 cut(s) | 443, 795, 804, 1283, 1511, 1515, 1527, 1745 |
| Tru9I | TTAA | 8 cut(s) | 443, 795, 804, 1283, 1511, 1515, 1527, 1745 |
| TscAI | CASTG | 2 cut(s) | 490, 1000 |
| TseFI | GTSAC | 2 cut(s) | 367, 1087 |
| TseI | GCWGC | 4 cut(s) | 182, 392, 1704, 2021 |
| Tsp45I | GTSAC | 2 cut(s) | 367, 1087 |
| TspGWI | ACGGA | 1 cut(s) | 1753 |
| TspRI | CASTG | 2 cut(s) | 490, 1000 |
| Vha464I | CTTAAG | 1 cut(s) | 803 |
| VpaK11BI | GGWCC | 2 cut(s) | 778, 2217 |
| VspI | ATTAAT | 1 cut(s) | 443 |
| XapI | RAATTY | 7 cut(s) | 470, 530, 826, 878, 1452, 1529, 1649 |
| XbaI | TCTAGA | 2 cut(s) | 920, 1223 |
| XceI | RCATGY | 1 cut(s) | 613 |
| XmnI | GAANNNNTTC | 2 cut(s) | 470, 953 |
| XspI | CTAG | 7 cut(s) | 513, 921, 1064, 1224, 1616, 2051, 2166 |
| ZrmI | AGTACT | 1 cut(s) | 886 |