Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036767.1

Orthogroup ID

OG0008156

Physical Location & Seq

Genomic Coordinates Reverse (-)

1006 .. 1839

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036767.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgatatctgcgctggtgcatcagggatatcattttctagctatcaaatttctcaactctctgatggaagctggcaggaagcctgatgaatttatcttgggtagtattctaagtagttgtgctcatattgcaggctatcatttaactcattctgttcattccattgtcatcaaaatgggatttcaaaaacaagtatttgtggttagtgcagttatagatgcttacgcaaaatgcggggatattgaaaatgcaaggatgatatttagccagtcatctagatctggcgatgtagttatatgtaatgctatgatcatagcttgtgctcatcacggtctggtcgaggaagctatggcgatctttgagaaaatgaagttggctaatctaaagcccagccaagccacatttgtgtcagtgttagcagcttgtagccacatgggacgggttgatcaaggtcgtttgttgtttgaatcaatagcctctgatcataagttgaaacaaatttctcaggatatttatggttgcatggttgatatgctttcacgaaatggattccttgaagaagctagacaaataattgaagtagtgccgtatactccttggcctgccattttaagatccttgcttagcggttgtcggacgcatgggaacttacagttgggagaatgggctgttaaggagttagtccagttggttccagaaaatgatgcaccttatgtattattgtcaaaggctcattctgaagcaggtagttgggaggatgctacaaagataaggagggaaatgatagaaagaggtgtacaaaaaaatacaggatatagttggattgagctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 Pkinase_Tyr

Protein Analysis

277

Amino Acids

30.75

Weight (kDa)

6.63

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008156)

Species	Orthologous Gene IDs
malus_domestica	MD13G1237500.v1.1
prunus_persica	Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1
pyrus_communis	pycom13g21030
rosa_chinensis	RchiOBHm_Chr6g0270531
rosa_laevigata	RLG00000013780
rosa_multiflora	Rmu_sc0004171.1_g000004 Rmu_sc0004477.1_g000003 Rmu_sc0036767.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197760 Rroxscaffold_7G00197840
rosa_rugosa	Rorug06G0055300 Rorug06G0055400 Rorug06G0055500
rosa_samantha	Rh6AG174500 Rh6BG177700 Rh6CG173700 Rh6DG166100
rosa_wichuraiana	Rw6G014840 Rw6G014870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	590
AciI	CCGC	2 cut(s)	234, 627
AclWI	GGATC	1 cut(s)	609
AcsI	RAATTY	3 cut(s)	47, 89, 498
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	1 cut(s)	798
AgsI	TTSAA	6 cut(s)	185, 245, 467, 493, 557, 578
AjuI	GAANNNNNNNTTGG	4 cut(s)	356, 388, 638, 670
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	7 cut(s)	41, 71, 317, 347, 422, 563, 829
AluI	AGCT	7 cut(s)	41, 71, 317, 347, 422, 563, 829
Alw21I	GWGCWC	2 cut(s)	124, 325
AlwI	GGATC	1 cut(s)	609
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	3 cut(s)	47, 89, 498
AspLEI	GCGC	1 cut(s)	13
Bbv12I	GWGCWC	2 cut(s)	124, 325
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	571
BclI	TGATCA	3 cut(s)	309, 445, 481
BfaI	CTAG	3 cut(s)	38, 276, 564
BfmI	CTRYAG	1 cut(s)	830
BfuAI	ACCTGC	1 cut(s)	734
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	1 cut(s)	420
BlpI	GCTNAGC	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	693
BmsI	GCATC	4 cut(s)	28, 208, 694, 748
Bpu1102I	GCTNAGC	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	268, 685
BseDI	CCNNGG	1 cut(s)	596
BseGI	GGATG	2 cut(s)	261, 763
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	2 cut(s)	268, 685
BseXI	GCAGC	1 cut(s)	431
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	601
BsiHKAI	GWGCWC	2 cut(s)	124, 325
BslFI	GGGAC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	124, 325
Bsp1407I	TGTACA	1 cut(s)	796
Bsp143I	GATC	6 cut(s)	278, 309, 354, 445, 481, 614
Bsp1720I	GCTNAGC	1 cut(s)	623
BspACI	CCGC	2 cut(s)	234, 627
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	693
BspMI	ACCTGC	1 cut(s)	734
BspPI	GGATC	1 cut(s)	609
BsrGI	TGTACA	1 cut(s)	796
BsrI	ACTGG	2 cut(s)	268, 685
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	6 cut(s)	278, 309, 354, 445, 481, 614
BssNAI	GTATAC	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	596
Bst1107I	GTATAC	1 cut(s)	591
Bst4CI	ACNGT	2 cut(s)	332, 654
BstAUI	TGTACA	1 cut(s)	796
BstC8I	GCNNGC	3 cut(s)	73, 133, 603
BstDEI	CTNAG	3 cut(s)	110, 504, 623
BstF5I	GGATG	2 cut(s)	261, 763
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	6 cut(s)	281, 312, 357, 448, 484, 617
BstMBI	GATC	6 cut(s)	278, 309, 354, 445, 481, 614
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	830
BstV1I	GCAGC	1 cut(s)	431
BstX2I	RGATCY	2 cut(s)	278, 614
BstYI	RGATCY	2 cut(s)	278, 614
BstZ17I	GTATAC	1 cut(s)	591
BsuRI	GGCC	1 cut(s)	601
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	261, 763
BtsIMutI	CAGTG	1 cut(s)	417
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	3 cut(s)	73, 133, 603
CfoI	GCGC	1 cut(s)	13
CseI	GACGC	1 cut(s)	646
Csp6I	GTAC	1 cut(s)	797
CviAII	CATG	3 cut(s)	433, 523, 641
CviQI	GTAC	1 cut(s)	797
DdeI	CTNAG	3 cut(s)	110, 504, 623
DpnI	GATC	6 cut(s)	280, 311, 356, 447, 483, 616
DpnII	GATC	6 cut(s)	278, 309, 354, 445, 481, 614
Eco130I	CCWWGG	1 cut(s)	596
Eco32I	GATATC	2 cut(s)	6, 29
Eco57I	CTGAAG	1 cut(s)	759
EcoRV	GATATC	2 cut(s)	6, 29
EcoT14I	CCWWGG	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	3 cut(s)	436, 526, 644
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	3 cut(s)	432, 522, 640
FauI	CCCGC	1 cut(s)	227
FbaI	TGATCA	3 cut(s)	309, 445, 481
FblI	GTMKAC	1 cut(s)	590
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	2 cut(s)	268, 770
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	3 cut(s)	38, 276, 564
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	420
GsaI	CCCAGC	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	601
HgaI	GACGC	1 cut(s)	646
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	436, 526, 644
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	2 cut(s)	467, 549
Hpy166II	GTNNAC	2 cut(s)	591, 797
Hpy188I	TCNGA	4 cut(s)	63, 481, 636, 739
Hpy188III	TCNNGA	4 cut(s)	276, 506, 540, 695
Hpy8I	GTNNAC	2 cut(s)	591, 797
HpyCH4III	ACNGT	2 cut(s)	332, 654
HpyCH4V	TGCA	6 cut(s)	19, 131, 209, 251, 522, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	3 cut(s)	110, 504, 623
Hsp92II	CATG	3 cut(s)	436, 526, 644
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	3 cut(s)	309, 445, 481
Kzo9I	GATC	6 cut(s)	278, 309, 354, 445, 481, 614
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	4 cut(s)	28, 208, 694, 748
MaeI	CTAG	3 cut(s)	38, 276, 564
MalI	GATC	6 cut(s)	280, 311, 356, 447, 483, 616
MboI	GATC	6 cut(s)	278, 309, 354, 445, 481, 614
MboII	GAAGA	1 cut(s)	569
MflI	RGATCY	2 cut(s)	278, 614
MhlI	GDGCHC	2 cut(s)	124, 325
MluCI	AATT	4 cut(s)	47, 89, 498, 573
MmeI	TCCRAC	2 cut(s)	614, 800
MnlI	CCTC	5 cut(s)	334, 487, 748, 768, 785
MseI	TTAA	3 cut(s)	143, 611, 672
MslI	CAYNNNNRTG	2 cut(s)	173, 404
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	6 cut(s)	278, 309, 354, 445, 481, 614
NlaIII	CATG	3 cut(s)	436, 526, 644
NlaIV	GGNNCC	1 cut(s)	693
OliI	CACNNNNGTG	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	467, 549
PkrI	GCNGC	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	693
PsuI	RGATCY	2 cut(s)	278, 614
RsaI	GTAC	1 cut(s)	798
RsaNI	GTAC	1 cut(s)	797
RseI	CAYNNNNRTG	2 cut(s)	173, 404
SaqAI	TTAA	3 cut(s)	143, 611, 672
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	6 cut(s)	278, 309, 354, 445, 481, 614
SduI	GDGCHC	2 cut(s)	124, 325
SfaNI	GCATC	4 cut(s)	28, 208, 694, 748
SfcI	CTRYAG	1 cut(s)	830
SmiMI	CAYNNNNRTG	2 cut(s)	173, 404
Sse9I	AATT	4 cut(s)	47, 89, 498, 573
SsiI	CCGC	2 cut(s)	234, 627
SspMI	CTAG	3 cut(s)	38, 276, 564
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	2 cut(s)	332, 654
TaqI	TCGA	1 cut(s)	339
TasI	AATT	4 cut(s)	47, 89, 498, 573
TatI	WGTACW	1 cut(s)	796
TfiI	GAWTC	2 cut(s)	467, 549
Tru1I	TTAA	3 cut(s)	143, 611, 672
Tru9I	TTAA	3 cut(s)	143, 611, 672
TscAI	CASTG	1 cut(s)	417
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	102, 146, 383
TspRI	CASTG	1 cut(s)	417
XapI	RAATTY	3 cut(s)	47, 89, 498
XbaI	TCTAGA	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	590
XspI	CTAG	3 cut(s)	38, 276, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.