Rorug06G0055400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008156
Physical Location & Seq
Forward (+)
7616165 .. 7617706
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0055400.1

Sequence Viewer

Length: 1212 bp
ATGGAAGAGGAAATGAGAGCCCATATATTAGTGATTAGAGAGCTGGACTTGAAAAAGGACACACCAAGGGTTGAAGAGTTAGAGAGAGGGTGTGAGGCTGGCTCAAGTGGCGAAATGTCACTCTTTACTGATCTTTTGGGTGACCCGATTTGCCGAATCCGAAACTCGCCCTCGTTCCTCATGCTGGTGGCTGAAATGGGAAAAGAAATCGTTGGGATCATCAGGGGTTGCATCAAAGTCGTTTCTTGTGGTAAAAACATCACGAGGCCTAGCAATGAAGATTCCGATCTTAAATTCAAACCCATTTGCACCAAACTTGCTTACATTCTTGGCCTTAGAGTTTCCGCTTCACACAGGAGAAAAGGTATTGGTCTGAAACTAGTTAACAGAATGGAAGAATGGTTTCGAAGAAATGGTGCAGAGTACTCATACATGGCTACTGAGCTTGACAACAAAGCTTCACTAAACCTTTTCACCCAAAAATGCTACTACACCAAATTTCGTACCCCTTCAATTTTGGTCCAACCGGTCTTTGTTCACCGAGTCAAAACTCACCGCAATCAAGTCACCATTATTGAACTCACCCCACCGGAGGCTGAGACCCTCTACCGCCGCCAATTCTCCGCCACCGAGTTTTTTCCTCAGGACATTGATAGAATTGTGGAAAACAAGCTCAATGTTGGTACATTTTTAGCTGTCCCAACCGAGTTTTTGTGGACGGGTTTGGAAAGGTTTCTATCCAAGCCGCCCGAGTCATGGGCTGTTTTGAGTGCATGGAATTGTAAGGAGGTGTTTACATTGGAAATCAAAGGTGCATCGCTTGCACGGCGCTTGGCTGCCAAGGCAACTCGCATGGTGGATAGGGCGCTGCCTTGGCTGAGGATACCTTCGGTCCCCAATATTTTCAGGCCATTTGGGTTGCTTTTCCTGTATGGGTTAGGAGGACAAGGCCCACGCGCAGATAAGCTGGCAAAGGTGCTTTTTGGCCATGCACATAACGTAGCTAGGGAATTGGGCTGTGGGGTGGTGGTGACCGAAGTAGCCGACCAAGAACCGTTGAGGTTAGCAGTACCACATTGGAAGCGGCTATCGTGCGCCGAGGATGTGTGGTGCATCAAGAGGCTTGTTGAGGACTATAGTGATGGGTCACTTGGGGACTGGACCAAATCTCCACCCGGGTTATCAATTTTTGTTGATCCAAGGGAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

403

Amino Acids

45.73

Weight (kDa)

8.92

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 54 - 160 3.6e-13 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 957
AciI CCGC 7 cut(s) 345, 556, 610, 613, 624, 746, 1084
AclWI GGATC 2 cut(s) 224, 1190
AcoI YGGCCR 1 cut(s) 985
AcsI RAATTY 3 cut(s) 293, 497, 1205
AfaI GTAC 4 cut(s) 425, 505, 685, 1071
AfiI CCNNNNNNNGG 3 cut(s) 184, 592, 756
AgeI ACCGGT 1 cut(s) 526
AgsI TTSAA 5 cut(s) 52, 74, 298, 513, 578
AhlI ACTAGT 1 cut(s) 379
AluBI AGCT 7 cut(s) 43, 445, 458, 673, 695, 967, 1004
AluI AGCT 7 cut(s) 43, 445, 458, 673, 695, 967, 1004
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 2 cut(s) 224, 1190
Ama87I CYCGRG 2 cut(s) 749, 1175
AoxI GGCC 5 cut(s) 266, 331, 908, 949, 985
ApeKI GCWGC 2 cut(s) 836, 868
ApoI RAATTY 3 cut(s) 293, 497, 1205
AsiGI ACCGGT 1 cut(s) 526
Asp700I GAANNNNTTC 2 cut(s) 402, 732
AspLEI GCGC 4 cut(s) 831, 868, 959, 1097
AspS9I GGNCC 4 cut(s) 520, 892, 950, 1161
AsuC2I CCSGG 2 cut(s) 1176, 1177
AsuHPI GGTGA 7 cut(s) 152, 466, 530, 545, 559, 574, 1042
AsuII TTCGAA 1 cut(s) 406
AvaI CYCGRG 2 cut(s) 749, 1175
AvaII GGWCC 3 cut(s) 520, 892, 1161
AxyI CCTNAGG 1 cut(s) 642
BalI TGGCCA 1 cut(s) 987
BanII GRGCYC 1 cut(s) 22
BauI CACGAG 1 cut(s) 262
BbvCI CCTCAGC 1 cut(s) 878
BbvI GCAGC 2 cut(s) 823, 855
BccI CCATC 1 cut(s) 1136
BceAI ACGGC 1 cut(s) 842
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciVI GTATCC 1 cut(s) 876
BcnI CCSGG 2 cut(s) 1176, 1177
BcoDI GTCTC 1 cut(s) 593
BcuI ACTAGT 1 cut(s) 379
BfaI CTAG 4 cut(s) 270, 380, 1005, 1210
BfmI CTRYAG 1 cut(s) 1135
BfoI RGCGCY 2 cut(s) 832, 869
BfuI GTATCC 1 cut(s) 876
BisI GCNGC 5 cut(s) 613, 746, 837, 869, 1085
BlsI GCNGC 5 cut(s) 614, 747, 838, 870, 1086
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 2 cut(s) 1176, 1177
Bme18I GGWCC 3 cut(s) 520, 892, 1161
BmeT110I CYCGRG 2 cut(s) 749, 1175
BmgT120I GGNCC 4 cut(s) 520, 892, 950, 1161
BmiI GGNNCC 1 cut(s) 894
BmrFI CCNGG 2 cut(s) 1176, 1177
BmsI GCATC 3 cut(s) 240, 824, 1122
BplI GAGNNNNNCTC 2 cut(s) 86, 118
Bpu10I CCTNAGC 1 cut(s) 878
Bpu14I TTCGAA 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 2 cut(s) 1176, 1177
BsaBI GATNNNNATC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 6 cut(s) 65, 840, 872, 1098, 1175, 1199
BsaWI WCCGGW 2 cut(s) 526, 589
BsaXI ACNNNNNCTCC 4 cut(s) 349, 379, 1153, 1183
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 592, 756
Bse118I RCCGGY 1 cut(s) 526
Bse1I ACTGG 1 cut(s) 1163
Bse21I CCTNAGG 1 cut(s) 642
Bse3DI GCAATG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 6 cut(s) 65, 840, 872, 1098, 1175, 1199
BseGI GGATG 1 cut(s) 1108
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 3 cut(s) 184, 592, 756
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 4 cut(s) 432, 588, 656, 869
BseNI ACTGG 1 cut(s) 1163
BseXI GCAGC 2 cut(s) 823, 855
BsgI GTGCAG 1 cut(s) 438
Bsh1236I CGCG 1 cut(s) 957
BshFI GGCC 5 cut(s) 268, 333, 910, 951, 987
BshTI ACCGGT 1 cut(s) 526
BsiHKCI CYCGRG 2 cut(s) 749, 1175
BsiSI CCGG 3 cut(s) 527, 590, 1176
BslFI GGGAC 3 cut(s) 683, 878, 1169
BslI CCNNNNNNNGG 3 cut(s) 184, 592, 756
BsmAI GTCTC 1 cut(s) 593
BsmFI GGGAC 3 cut(s) 683, 878, 1169
BsnI GGCC 5 cut(s) 268, 333, 910, 951, 987
Bso31I GGTCTC 1 cut(s) 593
BsoBI CYCGRG 2 cut(s) 749, 1175
Bsp119I TTCGAA 1 cut(s) 406
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 4 cut(s) 130, 216, 286, 1195
BspACI CCGC 7 cut(s) 345, 556, 610, 613, 624, 746, 1084
BspANI GGCC 5 cut(s) 268, 333, 910, 951, 987
BspCNI CTCAG 4 cut(s) 433, 589, 655, 870
BspFNI CGCG 1 cut(s) 957
BspLI GGNNCC 1 cut(s) 894
BspPI GGATC 2 cut(s) 224, 1190
BspT104I TTCGAA 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 526
BsrI ACTGG 1 cut(s) 1163
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 6 cut(s) 65, 840, 872, 1098, 1175, 1199
BssMI GATC 4 cut(s) 130, 216, 286, 1195
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 4 cut(s) 65, 840, 872, 1199
Bst2BI CACGAG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 1056
Bst6I CTCTTC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 821
BstBI TTCGAA 1 cut(s) 406
BstC8I GCNNGC 3 cut(s) 100, 822, 969
BstDEI CTNAG 5 cut(s) 335, 441, 597, 642, 878
BstEII GGTNACC 2 cut(s) 140, 1030
BstF5I GGATG 1 cut(s) 1108
BstFNI CGCG 1 cut(s) 957
BstH2I RGCGCY 2 cut(s) 832, 869
BstHHI GCGC 4 cut(s) 831, 868, 959, 1097
BstKTI GATC 4 cut(s) 133, 219, 289, 1198
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 4 cut(s) 130, 216, 286, 1195
BstMWI GCNNNNNNNGC 5 cut(s) 108, 821, 826, 842, 874
BstPI GGTNACC 2 cut(s) 140, 1030
BstSCI CCNGG 2 cut(s) 1174, 1175
BstSFI CTRYAG 1 cut(s) 1135
BstUI CGCG 1 cut(s) 957
BstV1I GCAGC 2 cut(s) 823, 855
Bsu36I CCTNAGG 1 cut(s) 642
BsuI GTATCC 1 cut(s) 876
BsuRI GGCC 5 cut(s) 268, 333, 910, 951, 987
BtgZI GCGATG 1 cut(s) 801
BtsCI GGATG 1 cut(s) 1108
Cac8I GCNNGC 3 cut(s) 100, 822, 969
CfoI GCGC 4 cut(s) 831, 868, 959, 1097
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 4 cut(s) 520, 892, 950, 1161
Cfr9I CCCGGG 1 cut(s) 1175
Csp6I GTAC 4 cut(s) 424, 504, 684, 1070
CspAI ACCGGT 1 cut(s) 526
CviAII CATG 6 cut(s) 181, 433, 756, 774, 853, 989
CviQI GTAC 4 cut(s) 424, 504, 684, 1070
DdeI CTNAG 5 cut(s) 335, 441, 597, 642, 878
DpnI GATC 4 cut(s) 132, 218, 288, 1197
DpnII GATC 4 cut(s) 130, 216, 286, 1195
EaeI YGGCCR 1 cut(s) 985
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 613
Eco130I CCWWGG 4 cut(s) 65, 840, 872, 1199
Eco147I AGGCCT 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 593
Eco47I GGWCC 3 cut(s) 520, 892, 1161
Eco81I CCTNAGG 1 cut(s) 642
Eco88I CYCGRG 2 cut(s) 749, 1175
Eco91I GGTNACC 2 cut(s) 140, 1030
EcoO65I GGTNACC 2 cut(s) 140, 1030
EcoRI GAATTC 1 cut(s) 1205
EcoT14I CCWWGG 4 cut(s) 65, 840, 872, 1199
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 4 cut(s) 65, 840, 872, 1199
FaeI CATG 6 cut(s) 184, 436, 759, 777, 856, 992
FaqI GGGAC 3 cut(s) 683, 878, 1169
FatI CATG 6 cut(s) 180, 432, 755, 773, 852, 988
Fnu4HI GCNGC 5 cut(s) 613, 746, 837, 869, 1085
FokI GGATG 1 cut(s) 1115
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 5 cut(s) 613, 746, 837, 869, 1085
FspBI CTAG 4 cut(s) 270, 380, 1005, 1210
GlaI GCGC 4 cut(s) 830, 867, 958, 1096
GluI GCNGC 5 cut(s) 613, 746, 837, 869, 1085
HaeII RGCGCY 2 cut(s) 832, 869
HaeIII GGCC 5 cut(s) 268, 333, 910, 951, 987
HapII CCGG 3 cut(s) 527, 590, 1176
HhaI GCGC 4 cut(s) 831, 868, 959, 1097
Hin1II CATG 6 cut(s) 184, 436, 759, 777, 856, 992
Hin6I GCGC 4 cut(s) 829, 866, 957, 1095
HinP1I GCGC 4 cut(s) 829, 866, 957, 1095
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 4 cut(s) 156, 281, 543, 752
HpaI GTTAAC 1 cut(s) 385
HpaII CCGG 3 cut(s) 527, 590, 1176
HphI GGTGA 7 cut(s) 152, 466, 530, 545, 559, 574, 1042
Hpy166II GTNNAC 4 cut(s) 385, 538, 717, 795
Hpy188I TCNGA 3 cut(s) 161, 286, 375
Hpy188III TCNNGA 3 cut(s) 262, 644, 1117
Hpy8I GTNNAC 4 cut(s) 385, 538, 717, 795
HpyAV CCTTC 2 cut(s) 519, 897
HpyCH4III ACNGT 1 cut(s) 1056
HpyCH4IV ACGT 1 cut(s) 999
HpyCH4V TGCA 8 cut(s) 231, 309, 419, 773, 815, 824, 992, 1113
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 821, 826, 842, 874
HpyF3I CTNAG 5 cut(s) 335, 441, 597, 642, 878
HpySE526I ACGT 1 cut(s) 999
Hsp92II CATG 6 cut(s) 184, 436, 759, 777, 856, 992
HspAI GCGC 4 cut(s) 829, 866, 957, 1095
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 4 cut(s) 130, 216, 286, 1195
Lsp1109I GCAGC 2 cut(s) 823, 855
LweI GCATC 3 cut(s) 240, 824, 1122
MaeI CTAG 4 cut(s) 270, 380, 1005, 1210
MaeII ACGT 1 cut(s) 999
MaeIII GTNAC 5 cut(s) 117, 140, 565, 1030, 1146
MalI GATC 4 cut(s) 132, 218, 288, 1197
MboI GATC 4 cut(s) 130, 216, 286, 1195
MboII GAAGA 5 cut(s) 17, 86, 290, 407, 420
MhlI GDGCHC 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 987
MluCI AATT 9 cut(s) 293, 497, 513, 617, 657, 778, 1010, 1185, 1205
MluNI TGGCCA 1 cut(s) 987
MlyI GAGTC 2 cut(s) 552, 761
MmeI TCCRAC 1 cut(s) 547
Mox20I TGGCCA 1 cut(s) 987
MroXI GAANNNNTTC 2 cut(s) 402, 732
MscI TGGCCA 1 cut(s) 987
MseI TTAA 2 cut(s) 291, 384
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 987
MspI CCGG 3 cut(s) 527, 590, 1176
MspR9I CCNGG 2 cut(s) 1176, 1177
MvnI CGCG 1 cut(s) 957
MwoI GCNNNNNNNGC 5 cut(s) 108, 821, 826, 842, 874
NciI CCSGG 2 cut(s) 1176, 1177
NdeII GATC 4 cut(s) 130, 216, 286, 1195
NlaIII CATG 6 cut(s) 184, 436, 759, 777, 856, 992
NlaIV GGNNCC 1 cut(s) 894
NmeAIII GCCGAG 1 cut(s) 1123
NmuCI GTSAC 5 cut(s) 117, 140, 565, 1030, 1146
NspV TTCGAA 1 cut(s) 406
PceI AGGCCT 1 cut(s) 268
PdmI GAANNNNTTC 2 cut(s) 402, 732
PfeI GAWTC 2 cut(s) 156, 281
PinAI ACCGGT 1 cut(s) 526
PkrI GCNGC 5 cut(s) 614, 747, 838, 870, 1086
PleI GAGTC 2 cut(s) 551, 760
PpsI GAGTC 2 cut(s) 551, 760
PspEI GGTNACC 2 cut(s) 140, 1030
PspN4I GGNNCC 1 cut(s) 894
PspPI GGNCC 4 cut(s) 520, 892, 950, 1161
RsaI GTAC 4 cut(s) 425, 505, 685, 1071
RsaNI GTAC 4 cut(s) 424, 504, 684, 1070
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 2 cut(s) 291, 384
SatI GCNGC 5 cut(s) 613, 746, 837, 869, 1085
Sau3AI GATC 4 cut(s) 130, 216, 286, 1195
Sau96I GGNCC 4 cut(s) 520, 892, 950, 1161
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 2 cut(s) 552, 761
ScrFI CCNGG 2 cut(s) 1176, 1177
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 3 cut(s) 240, 824, 1122
SfcI CTRYAG 1 cut(s) 1135
SfuI TTCGAA 1 cut(s) 406
SinI GGWCC 3 cut(s) 520, 892, 1161
SmaI CCCGGG 1 cut(s) 1177
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SpeI ACTAGT 1 cut(s) 379
Sse9I AATT 9 cut(s) 293, 497, 513, 617, 657, 778, 1010, 1185, 1205
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 7 cut(s) 345, 556, 610, 613, 624, 746, 1084
SspI AATATT 1 cut(s) 901
SspMI CTAG 4 cut(s) 270, 380, 1005, 1210
StuI AGGCCT 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 1174, 1175
StyI CCWWGG 4 cut(s) 65, 840, 872, 1199
TaaI ACNGT 1 cut(s) 1056
TaiI ACGT 1 cut(s) 1002
TaqI TCGA 1 cut(s) 406
TaqII GACCGA 2 cut(s) 880, 1049
TasI AATT 9 cut(s) 293, 497, 513, 617, 657, 778, 1010, 1185, 1205
TatI WGTACW 1 cut(s) 423
TauI GCSGC 3 cut(s) 615, 748, 1087
TfiI GAWTC 2 cut(s) 156, 281
Tru1I TTAA 2 cut(s) 291, 384
Tru9I TTAA 2 cut(s) 291, 384
TseFI GTSAC 5 cut(s) 117, 140, 565, 1030, 1146
TseI GCWGC 2 cut(s) 836, 868
Tsp45I GTSAC 5 cut(s) 117, 140, 565, 1030, 1146
TspDTI ATGAA 1 cut(s) 291
TspMI CCCGGG 1 cut(s) 1175
VpaK11BI GGWCC 3 cut(s) 520, 892, 1161
XapI RAATTY 3 cut(s) 293, 497, 1205
XmaI CCCGGG 1 cut(s) 1175
XmnI GAANNNNTTC 2 cut(s) 402, 732
XspI CTAG 4 cut(s) 270, 380, 1005, 1210
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.