Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008156

Physical Location & Seq

Genomic Coordinates Reverse (-)

7601773 .. 7606321

Gene Structure 4549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0055300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGATGGCGAGTATAGGAGGAAAGATTGTTGGGGTTTTAGAAATCACTTGAATGAGGCATTGGAGAGGGAGAAGAGTATGCTGGAAGAGGATGTGAGCAAGTTCCATGAGATGATTGAGAATCTCGACAAGAATGTGAAGAAAATGTTGGGGATGCACGCGCATCTGGTTAGTGTTGCTGTCATAAACGATGCTGAGTTTAGAGATACTGGATTGAAAAGGTCTGAAAAGTTGGCAAAAGATTTGGAGTGGTTGAAGGAGCAAGGCCATGCCATACCAGAACCTTCTGCTCCTGGTGAGAAAAAGAGAGCAGCAGTGGCAGATTTGTCCTCCGCCATCGAGAAGGAGCAAATCTCAGATCAGTGCTGGCTTAGTGGTAGTTTGGTGGTTGTTTGCCCCAACCTGGTGTCTTGTTGTTCAGGTCGGGCTAGTCTGGGCGCTTTGCATTTTGTATCAAGGATCTCCTGTGATTTGAAGCCAGATCGGATCCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 Pkinase_Tyr

Protein Analysis

165

Amino Acids

18.55

Weight (kDa)

5.89

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008156)

Species	Orthologous Gene IDs
malus_domestica	MD13G1237500.v1.1
prunus_persica	Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1 Prupe.1G070000_v2.0.a1
pyrus_communis	pycom13g21030
rosa_chinensis	RchiOBHm_Chr6g0270531
rosa_laevigata	RLG00000013780
rosa_multiflora	Rmu_sc0004171.1_g000004 Rmu_sc0004477.1_g000003 Rmu_sc0036767.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197760 Rroxscaffold_7G00197840
rosa_rugosa	Rorug06G0055300 Rorug06G0055400 Rorug06G0055500
rosa_samantha	Rh6AG174500 Rh6BG177700 Rh6CG173700 Rh6DG166100
rosa_wichuraiana	Rw6G014840 Rw6G014870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	161
AciI	CCGC	1 cut(s)	333
AclWI	GGATC	3 cut(s)	467, 481, 494
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	4 cut(s)	52, 217, 256, 475
AjnI	CCWGG	2 cut(s)	292, 402
AjuI	GAANNNNNNNTTGG	4 cut(s)	44, 76, 131, 163
AlwI	GGATC	3 cut(s)	467, 481, 494
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	311
AspLEI	GCGC	2 cut(s)	163, 440
AsuHPI	GGTGA	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	2 cut(s)	294, 404
BfaI	CTAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	441
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	294, 404
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	2 cut(s)	294, 404
BmsI	GCATC	3 cut(s)	144, 172, 181
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	294, 404
BseGI	GGATG	3 cut(s)	10, 97, 159
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	186, 369
BseNI	ACTGG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	403
BsnI	GGCC	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	358, 459, 481, 486
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	2 cut(s)	187, 368
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	488
BspPI	GGATC	3 cut(s)	467, 481, 494
BsrI	ACTGG	1 cut(s)	214
BssMI	GATC	4 cut(s)	358, 459, 481, 486
Bst2UI	CCWGG	2 cut(s)	294, 404
Bst6I	CTCTTC	2 cut(s)	68, 81
BstC8I	GCNNGC	2 cut(s)	159, 368
BstDEI	CTNAG	3 cut(s)	195, 355, 371
BstF5I	GGATG	3 cut(s)	10, 97, 159
BstFNI	CGCG	1 cut(s)	161
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	2 cut(s)	163, 440
BstKTI	GATC	4 cut(s)	361, 462, 484, 489
BstMBI	GATC	4 cut(s)	358, 459, 481, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	2 cut(s)	294, 404
BstSCI	CCNGG	2 cut(s)	292, 402
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	2 cut(s)	459, 486
BstYI	RGATCY	2 cut(s)	459, 486
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	10, 97, 159
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	321, 368
Cac8I	GCNNGC	2 cut(s)	159, 368
CfoI	GCGC	2 cut(s)	163, 440
CsiI	ACCWGGT	1 cut(s)	402
CviAII	CATG	2 cut(s)	107, 269
CviJI	RGCY	4 cut(s)	267, 370, 428, 478
CviKI_1	RGCY	4 cut(s)	267, 370, 428, 478
DdeI	CTNAG	3 cut(s)	195, 355, 371
DpnI	GATC	4 cut(s)	360, 461, 483, 488
DpnII	GATC	4 cut(s)	358, 459, 481, 486
Eam1104I	CTCTTC	2 cut(s)	68, 81
EarI	CTCTTC	2 cut(s)	68, 81
EciI	GGCGGA	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	292, 402
FaeI	CATG	2 cut(s)	110, 272
FaiI	YATR	6 cut(s)	15, 80, 108, 185, 270, 275
FatI	CATG	2 cut(s)	106, 268
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	3 cut(s)	17, 104, 166
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	2 cut(s)	162, 439
GluI	GCNGC	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	267
HhaI	GCGC	2 cut(s)	163, 440
Hin1II	CATG	2 cut(s)	110, 272
Hin6I	GCGC	2 cut(s)	161, 438
HinP1I	GCGC	2 cut(s)	161, 438
HinfI	GANTC	1 cut(s)	121
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	3 cut(s)	226, 358, 486
Hpy188III	TCNNGA	2 cut(s)	125, 340
HpyAV	CCTTC	3 cut(s)	250, 294, 337
HpyCH4V	TGCA	2 cut(s)	157, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	3 cut(s)	195, 355, 371
Hsp92II	CATG	2 cut(s)	110, 272
HspAI	GCGC	2 cut(s)	161, 438
Kzo9I	GATC	4 cut(s)	358, 459, 481, 486
LmnI	GCTCC	3 cut(s)	259, 295, 346
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	3 cut(s)	144, 172, 181
MabI	ACCWGGT	1 cut(s)	402
MaeI	CTAG	1 cut(s)	429
MalI	GATC	4 cut(s)	360, 461, 483, 488
MboI	GATC	4 cut(s)	358, 459, 481, 486
MboII	GAAGA	3 cut(s)	85, 98, 151
MflI	RGATCY	2 cut(s)	459, 486
MnlI	CCTC	5 cut(s)	12, 49, 60, 82, 340
MslI	CAYNNNNRTG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	294, 404
MvaI	CCWGG	2 cut(s)	294, 404
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	4 cut(s)	358, 459, 481, 486
NlaIII	CATG	2 cut(s)	110, 272
NlaIV	GGNNCC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	292, 402
PspGI	CCWGG	2 cut(s)	292, 402
PspN4I	GGNNCC	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	459, 486
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	4 cut(s)	358, 459, 481, 486
ScrFI	CCNGG	2 cut(s)	294, 404
SetI	ASST	4 cut(s)	224, 286, 405, 424
SexAI	ACCWGGT	1 cut(s)	402
SfaNI	GCATC	3 cut(s)	144, 172, 181
SmiMI	CAYNNNNRTG	1 cut(s)	51
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	292, 402
TaqI	TCGA	2 cut(s)	126, 339
TfiI	GAWTC	1 cut(s)	121
TscAI	CASTG	2 cut(s)	321, 368
TseI	GCWGC	1 cut(s)	311
TspRI	CASTG	2 cut(s)	321, 368
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.