Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014880

Physical Location & Seq

Genomic Coordinates Reverse (-)

7594392 .. 7594844

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G096300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAATTCCCTGATTGCTTTATCCAGTTGATCATGGGTTGTATTACATATGTTTCTTACTCCCTATTGATTCAAGGGTGTCCGCTGGGTCTCCTCACTCCTACTCAGGGTCTACGCCAAGGAAATCCCCTGTCATCCTATTTATTCCTTTTAGTGACTGAGGGCTTTTCATCCTCACTTCAGAAAGCCAATCAGGATTCTCGAGTTTTCGGGGTTTCTATTGTTCCTTTCGCACCTTCTCTTAATCACCTATTTTTTGCAAATGACACCCTCTTATTTTGTGATGCTGAATTTACCCAAATAATGGAGTTGAAGCGCCTCTTTAGTCTTTATGAAGCAACGTCGAGGCAGCAAATAAATTTTGCCAAGTTTGCTATCTATTTTAGCCCATCTAACTCTGAATCACCCCAAGCTCAACTCCAAGCTCTTCCGGTATTTCCATGCCATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 zf-RVT

Protein Analysis

151

Amino Acids

16.81

Weight (kDa)

5.02

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23121
prunus_persica	Prupe.1G096300_v2.0.a1 Prupe.2G149100_v2.0.a1
pyrus_communis	pycom11g21820 pycom12401g00240
rosa_chinensis	RchiOBHm_Chr3g0490381
rosa_laevigata	RLG00000030695
rosa_multiflora	Rmu_sc0001767.1_g000001 Rmu_sc0003177.1_g000032 Rmu_sc0007121.1_g000017
rosa_roxburghii	Rroxscaffold_5G00369940
rosa_rugosa	Rorug07G0099500
rosa_samantha	Rh2CG198100 Rh2CG348800 Rh4CG274000 Rh5AG302200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	112
AciI	CCGC	1 cut(s)	83
AcsI	RAATTY	3 cut(s)	5, 290, 358
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	107, 304
AgsI	TTSAA	2 cut(s)	74, 313
AluBI	AGCT	2 cut(s)	413, 425
AluI	AGCT	2 cut(s)	413, 425
Alw26I	GTCTC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	3 cut(s)	5, 290, 358
AspLEI	GCGC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	239, 396
AvaI	CYCGRG	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	319
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	430
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 304
Bse1I	ACTGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	134, 170
BseLI	CCNNNNNNNGG	2 cut(s)	107, 304
BseMII	CTCAG	2 cut(s)	119, 150
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	431
BslI	CCNNNNNNNGG	2 cut(s)	107, 304
BsmAI	GTCTC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	118, 151
BspQI	GCTCTTC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	105, 159
BstF5I	GGATG	2 cut(s)	134, 170
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	134, 170
CfoI	GCGC	1 cut(s)	318
CviAII	CATG	3 cut(s)	34, 441, 446
CviJI	RGCY	5 cut(s)	165, 188, 387, 413, 425
CviKI_1	RGCY	5 cut(s)	165, 188, 387, 413, 425
DdeI	CTNAG	2 cut(s)	105, 159
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	3 cut(s)	37, 444, 449
FaiI	YATR	6 cut(s)	35, 49, 51, 333, 442, 447
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FatI	CATG	3 cut(s)	33, 440, 445
FauNDI	CATATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	2 cut(s)	121, 157
Fsp4HI	GCNGC	1 cut(s)	350
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	350
GsaI	CCCAGC	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	319
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	37, 444, 449
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	70, 197, 401
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	2 cut(s)	239, 396
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	2 cut(s)	183, 400
Hpy188III	TCNNGA	2 cut(s)	194, 201
Hpy8I	GTNNAC	1 cut(s)	113
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	105, 159
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	37, 444, 449
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	432
LpnPI	CCDG	7 cut(s)	24, 38, 71, 92, 143, 179, 444
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	1 cut(s)	419
MluCI	AATT	3 cut(s)	5, 290, 358
MnlI	CCTC	6 cut(s)	104, 154, 184, 281, 329, 339
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	3 cut(s)	37, 444, 449
NmuCI	GTSAC	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	70, 197, 401
PflMI	CCANNNNNTGG	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	351
PspFI	CCCAGC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	1 cut(s)	30
SetI	ASST	5 cut(s)	238, 252, 344, 415, 427
SfaNI	GCATC	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	3 cut(s)	5, 290, 358
SsiI	CCGC	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	118
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	2 cut(s)	202, 344
TasI	AATT	3 cut(s)	5, 290, 358
TfiI	GAWTC	3 cut(s)	70, 197, 401
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	159, 348
Van91I	CCANNNNNTGG	1 cut(s)	304
XapI	RAATTY	3 cut(s)	5, 290, 358
XhoI	CTCGAG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.