Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014880

Physical Location & Seq

Genomic Coordinates Forward (+)

20459330 .. 20459946

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G149100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAATATGGGAGAAATTGTAAGCATCCAGTTTTCTAGCCACAGACTCCCTATAACATTCAAATACTTAGGCATCGTGCGATTAGAGACACCTATTCCTGCACAGCTCAACTTCATTAATGCAAAGGTCTTCCCCTTTGTACAATCAGCAATAAGTTGCAGTGGGGGTTTAAGTACGGACCAACTACCCAGTTTTAGGAGAAACTTGAATGAGTCTGAGGTGTCAGAAATAGCTTCCTTGTTGTCTCTACTTGAAAATGTCTGTATCCACTCTTCCAGGATTAATTCAAGAAAATGGGGCCTAGATACCACGGGGAGTCACTCCAACAAGTGTTATTACTGTTACCTGAGTAATTCTGGCTCAGAGTCTTCCTTCAATCCCCATGGTTTGCTTTGGTTATCTAGAACTCCCTCCAAGGTGAAGATTCTGTCATGGCTAATGGCTCACAGAAAGGTGAATACTTGTGATATGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_2 Glyco_hydro_2_C Glyco_hydro_2_N RVT_1 zf-RVT

Protein Analysis

159

Amino Acids

17.7

Weight (kDa)

9.1

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23121
prunus_persica	Prupe.1G096300_v2.0.a1 Prupe.2G149100_v2.0.a1
pyrus_communis	pycom11g21820 pycom12401g00240
rosa_chinensis	RchiOBHm_Chr3g0490381
rosa_laevigata	RLG00000030695
rosa_multiflora	Rmu_sc0001767.1_g000001 Rmu_sc0003177.1_g000032 Rmu_sc0007121.1_g000017
rosa_roxburghii	Rroxscaffold_5G00369940
rosa_rugosa	Rorug07G0099500
rosa_samantha	Rh2CG198100 Rh2CG348800 Rh4CG274000 Rh5AG302200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	141, 175
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	5 cut(s)	61, 208, 254, 288, 376
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	2 cut(s)	106, 233
AluI	AGCT	2 cut(s)	106, 233
Alw26I	GTCTC	2 cut(s)	80, 249
AoxI	GGCC	1 cut(s)	298
AseI	ATTAAT	2 cut(s)	117, 282
AspS9I	GGNCC	2 cut(s)	178, 298
AsuHPI	GGTGA	2 cut(s)	430, 466
AvaII	GGWCC	1 cut(s)	178
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbsI	GAAGAC	2 cut(s)	121, 360
BciT130I	CCWGG	1 cut(s)	277
BciVI	GTATCC	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	80, 249
BfaI	CTAG	3 cut(s)	36, 302, 402
BfuI	GTATCC	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	178, 298
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	2 cut(s)	33, 81
BmuI	ACTGGG	1 cut(s)	183
BpiI	GAAGAC	2 cut(s)	121, 360
BsaJI	CCNNGG	3 cut(s)	309, 382, 414
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	28, 189
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	309, 382, 414
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMII	CTCAG	3 cut(s)	207, 338, 375
BseNI	ACTGG	2 cut(s)	28, 189
BsgI	GTGCAG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	2 cut(s)	80, 249
BsnI	GGCC	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	139
Bsp19I	CCATGG	1 cut(s)	382
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	3 cut(s)	208, 339, 374
BspLI	GGNNCC	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	28, 189
BssECI	CCNNGG	3 cut(s)	309, 382, 414
BssT1I	CCWWGG	2 cut(s)	382, 414
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	139
BstDEI	CTNAG	4 cut(s)	67, 216, 347, 361
BstDSI	CCRYGG	2 cut(s)	309, 382
BstF5I	GGATG	1 cut(s)	24
BstMAI	GTCTC	2 cut(s)	80, 249
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstV2I	GAAGAC	2 cut(s)	121, 360
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	300
BtgI	CCRYGG	2 cut(s)	309, 382
BtsCI	GGATG	1 cut(s)	24
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	178, 298
Csp6I	GTAC	2 cut(s)	140, 174
CviAII	CATG	2 cut(s)	383, 432
CviJI	RGCY	7 cut(s)	39, 106, 233, 300, 360, 436, 443
CviKI_1	RGCY	7 cut(s)	39, 106, 233, 300, 360, 436, 443
CviQI	GTAC	2 cut(s)	140, 174
DdeI	CTNAG	4 cut(s)	67, 216, 347, 361
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	382, 414
Eco47I	GGWCC	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	275
EcoT14I	CCWWGG	2 cut(s)	382, 414
ErhI	CCWWGG	2 cut(s)	382, 414
FaeI	CATG	2 cut(s)	386, 435
FaiI	YATR	5 cut(s)	8, 53, 384, 433, 470
FatI	CATG	2 cut(s)	382, 431
FokI	GGATG	1 cut(s)	11
FspBI	CTAG	3 cut(s)	36, 302, 402
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	386, 435
HinfI	GANTC	5 cut(s)	45, 212, 316, 365, 424
HphI	GGTGA	2 cut(s)	430, 466
Hpy188I	TCNGA	3 cut(s)	217, 226, 364
Hpy188III	TCNNGA	2 cut(s)	288, 402
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	101, 122, 159
HpyF3I	CTNAG	4 cut(s)	67, 216, 347, 361
Hsp92II	CATG	2 cut(s)	386, 435
LpnPI	CCDG	7 cut(s)	41, 111, 202, 262, 289, 342, 359
LweI	GCATC	2 cut(s)	33, 81
MaeI	CTAG	3 cut(s)	36, 302, 402
MaeIII	GTNAC	2 cut(s)	317, 341
MboII	GAAGA	4 cut(s)	121, 264, 360, 433
MluCI	AATT	3 cut(s)	15, 283, 352
MlyI	GAGTC	4 cut(s)	39, 221, 325, 374
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	2 cut(s)	211, 421
MseI	TTAA	4 cut(s)	117, 170, 282, 475
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	382
NlaIII	CATG	2 cut(s)	386, 435
NlaIV	GGNNCC	1 cut(s)	299
NmuCI	GTSAC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	424
PfoI	TCCNGGA	1 cut(s)	275
PleI	GAGTC	4 cut(s)	39, 220, 324, 373
PpsI	GAGTC	4 cut(s)	39, 220, 324, 373
PshBI	ATTAAT	2 cut(s)	117, 282
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	2 cut(s)	178, 298
RsaI	GTAC	2 cut(s)	141, 175
RsaNI	GTAC	2 cut(s)	140, 174
SaqAI	TTAA	4 cut(s)	117, 170, 282, 475
Sau96I	GGNCC	2 cut(s)	178, 298
SchI	GAGTC	4 cut(s)	39, 221, 325, 374
ScrFI	CCNGG	1 cut(s)	277
SetI	ASST	8 cut(s)	94, 108, 129, 222, 235, 348, 420, 456
SfaNI	GCATC	2 cut(s)	33, 81
SinI	GGWCC	1 cut(s)	178
Sse9I	AATT	3 cut(s)	15, 283, 352
SspMI	CTAG	3 cut(s)	36, 302, 402
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	2 cut(s)	382, 414
TaaI	ACNGT	1 cut(s)	341
TasI	AATT	3 cut(s)	15, 283, 352
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	4 cut(s)	117, 170, 282, 475
Tru9I	TTAA	4 cut(s)	117, 170, 282, 475
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	17, 103
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	178
VspI	ATTAAT	2 cut(s)	117, 282
XbaI	TCTAGA	1 cut(s)	401
XspI	CTAG	3 cut(s)	36, 302, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.