Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011367

Physical Location & Seq

Genomic Coordinates Reverse (-)

7851049 .. 7853555

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0099500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGGGAGGAGGGGAAAAAGCCTGAGGAGAAGAAAATGGAGGAGAAGAAGCCTGAGGAGGTGAAAAAGCCTGAAGAGGAAAAGAAAGCTGAGGAGAAGAAGGAAGAGAAACCAGCTGAGGAGAAAAAGGAAGAGAAGAAAGCTGGGGAGGGTAAAGATGGCAAAGAGGCCAAAGTGGGTGATGCTCCTCCACCACCGCCGCCACCACCTCAAGAAATTGTGCTCAGAGTCTATATGCATTGTGAAGGTTGTGCTAGAAAGGTCAAGAGGTGTCTCAAAGGTTTTCAAGGGGTGGAAGATGTGAGCACTGATTGCAAGAGTCACAAGGTGGTTGTCAAGGGCGAGAAGGCTGATCCTAACAAGGTTTTCGAGAGAGTCCAGAGGAAGAGTCACAGACAAGTTGAGCTTCTCTCCCCAATCCTAAAACCACCAGCTGAGGAGGAGAAGAAGCCTGAAGAGAAACCCAAGCCAGAGGAGAAGAAAGAAGAGCCTCCTCAGGTCATCACTGTGGTGCTCAAGGTTCACATGCATTGCGAGGCTTGTGCACAAGAAATCAAGAAACGCATACAGAGGATGAAAGGAGTGGAATCAGCAGAACCAGATCTAAAGGGATCACAGGTGACAGTAAAGGGTGTGTTTGATCCGGCCAAGCTAGTTGAGTACGTGAACAAAAGGACCGGCAAGCACGCAGAGATAGTGAAGCAAGAACCGGAAAAGAAGGCTGACAAAGAAGAAGCCAAAGAGGGAAGTAAAGACGAGAAGAAAGGTGGTGAAGAAGGTGACAAGGACAAGAAGAGTGGTGGTGACAATGGTGCTGGTGGAGGTGAGGCCGCACCAGCAGAAGAGAACAAAGAAAAGAAAGGTGACGGCAATGAAGGCGGTGCCGCAGCTGCTGCTACACCGGATGGCGGGGCAGTTACAGAAGAGACCAAGGTTGTTGAGTTCATGAAGAACGAGTACAATTACTATCCACCAAGGTTTCCCATGGAGTACGCCTACCCTCCACAGATCTTCAGTGATGAGAACCCCAATGCATGTTCTGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

349

Amino Acids

38.72

Weight (kDa)

5.96

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	75 - 127	4.1e-11	Heavy-metal-associated domain
HMA	PF00403	172 - 228	4.8e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19520 AT1G19520
fragaria_vesca	FvH4_6g24430
malus_domestica	MD03G1139500.v1.1 MD11G1162300.v1.1
prunus_persica	Prupe.6G124500_v2.0.a1
pyrus_communis	pycom03g09450 pycom11g13170
rosa_chinensis	RchiOBHm_Chr7g0207751
rosa_laevigata	RLG00000003290
rosa_multiflora	Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012
rosa_roxburghii	Rroxscaffold_3G00251180
rosa_rugosa	Rorug07G0099500 Rorug07G0099600
rosa_samantha	Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800
rosa_wichuraiana	Rw7G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	881
AciI	CCGC	6 cut(s)	197, 200, 831, 879, 885, 909
AclWI	GGATC	3 cut(s)	347, 619, 635
AcoI	YGGCCR	1 cut(s)	645
AcuI	CTGAAG	3 cut(s)	93, 474, 997
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	3 cut(s)	662, 959, 992
AfiI	CCNNNNNNNGG	1 cut(s)	908
AgsI	TTSAA	1 cut(s)	287
AleI	CACNNNNGTG	1 cut(s)	509
AluBI	AGCT	7 cut(s)	89, 116, 143, 406, 434, 652, 890
AluI	AGCT	7 cut(s)	89, 116, 143, 406, 434, 652, 890
Alw21I	GWGCWC	4 cut(s)	225, 308, 516, 547
Alw26I	GTCTC	2 cut(s)	278, 920
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	3 cut(s)	347, 619, 635
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	3 cut(s)	168, 645, 828
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	3 cut(s)	887, 890, 893
AspS9I	GGNCC	1 cut(s)	675
AsuHPI	GGTGA	8 cut(s)	73, 191, 631, 782, 791, 815, 836, 875
AvaII	GGWCC	1 cut(s)	675
AxyI	CCTNAGG	3 cut(s)	24, 54, 495
BaeGI	GKGCMC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	881
BarI	GAAGNNNNNNTAC	2 cut(s)	941, 973
Bbv12I	GWGCWC	4 cut(s)	225, 308, 516, 547
BbvCI	CCTCAGC	3 cut(s)	90, 117, 435
BbvI	GCAGC	3 cut(s)	877, 880, 899
BccI	CCATC	2 cut(s)	152, 899
BceAI	ACGGC	1 cut(s)	883
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BcoDI	GTCTC	2 cut(s)	278, 920
BfaI	CTAG	2 cut(s)	255, 653
BglII	AGATCT	2 cut(s)	601, 1008
BisI	GCNGC	6 cut(s)	200, 831, 885, 888, 891, 894
BlsI	GCNGC	6 cut(s)	201, 832, 886, 889, 892, 895
Bme18I	GGWCC	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	675
BmiI	GGNNCC	1 cut(s)	883
BmsI	GCATC	1 cut(s)	172
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
Bpu10I	CCTNAGC	3 cut(s)	90, 117, 435
BpuEI	CTTGAG	2 cut(s)	195, 500
BsaAI	YACGTR	1 cut(s)	664
BsaI	GGTCTC	1 cut(s)	920
BsaJI	CCNNGG	3 cut(s)	930, 974, 984
BsaWI	WCCGGW	2 cut(s)	709, 901
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse118I	RCCGGY	1 cut(s)	677
Bse21I	CCTNAGG	3 cut(s)	24, 54, 495
Bse3DI	GCAATG	2 cut(s)	529, 877
BseDI	CCNNGG	3 cut(s)	930, 974, 984
BseGI	GGATG	2 cut(s)	579, 910
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMI	GCAATG	2 cut(s)	529, 877
BseMII	CTCAG	7 cut(s)	15, 45, 81, 108, 238, 426, 509
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	3 cut(s)	877, 880, 899
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	3 cut(s)	170, 647, 830
BshNI	GGYRCC	1 cut(s)	881
BsiHKAI	GWGCWC	4 cut(s)	225, 308, 516, 547
BsiSI	CCGG	4 cut(s)	644, 678, 710, 902
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmAI	GTCTC	2 cut(s)	278, 920
BsnI	GGCC	3 cut(s)	170, 647, 830
Bso31I	GGTCTC	1 cut(s)	920
Bsp1286I	GDGCHC	4 cut(s)	225, 308, 516, 547
Bsp143I	GATC	5 cut(s)	352, 601, 611, 640, 1008
Bsp19I	CCATGG	1 cut(s)	984
BspACI	CCGC	6 cut(s)	197, 200, 831, 879, 885, 909
BspANI	GGCC	3 cut(s)	170, 647, 830
BspCNI	CTCAG	7 cut(s)	16, 46, 82, 109, 237, 427, 508
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	1 cut(s)	883
BspPI	GGATC	3 cut(s)	347, 619, 635
BspQI	GCTCTTC	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	881
BspTNI	GGTCTC	1 cut(s)	920
BsrDI	GCAATG	2 cut(s)	529, 877
BsrFI	RCCGGY	1 cut(s)	677
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	930, 974, 984
BssMI	GATC	5 cut(s)	352, 601, 611, 640, 1008
BssT1I	CCWWGG	3 cut(s)	930, 974, 984
Bst4CI	ACNGT	2 cut(s)	508, 625
Bst6I	CTCTTC	9 cut(s)	69, 99, 126, 380, 450, 480, 788, 837, 918
BstAPI	GCANNNNNTGC	2 cut(s)	312, 893
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	2 cut(s)	683, 687
BstDEI	CTNAG	7 cut(s)	24, 54, 90, 117, 224, 435, 495
BstDSI	CCRYGG	1 cut(s)	984
BstF5I	GGATG	2 cut(s)	579, 910
BstKTI	GATC	5 cut(s)	355, 604, 614, 643, 1011
BstMAI	GTCTC	2 cut(s)	278, 920
BstMBI	GATC	5 cut(s)	352, 601, 611, 640, 1008
BstMWI	GCNNNNNNNGC	5 cut(s)	312, 836, 876, 890, 893
BstNSI	RCATGY	2 cut(s)	529, 1038
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	3 cut(s)	877, 880, 899
BstX2I	RGATCY	2 cut(s)	601, 1008
BstYI	RGATCY	2 cut(s)	601, 1008
Bsu36I	CCTNAGG	3 cut(s)	24, 54, 495
BsuRI	GGCC	3 cut(s)	170, 647, 830
BtgI	CCRYGG	1 cut(s)	984
BtsCI	GGATG	2 cut(s)	579, 910
BtsIMutI	CAGTG	3 cut(s)	306, 504, 1021
Cac8I	GCNNGC	2 cut(s)	683, 687
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	1 cut(s)	945
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	1 cut(s)	675
Csp6I	GTAC	3 cut(s)	661, 958, 991
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	4 cut(s)	526, 946, 985, 1035
CviQI	GTAC	3 cut(s)	661, 958, 991
DdeI	CTNAG	7 cut(s)	24, 54, 90, 117, 224, 435, 495
DpnI	GATC	5 cut(s)	354, 603, 613, 642, 1010
DpnII	GATC	5 cut(s)	352, 601, 611, 640, 1008
DraIII	CACNNNGTG	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	9 cut(s)	69, 99, 126, 380, 450, 480, 788, 837, 918
EarI	CTCTTC	9 cut(s)	69, 99, 126, 380, 450, 480, 788, 837, 918
Eco130I	CCWWGG	3 cut(s)	930, 974, 984
Eco31I	GGTCTC	1 cut(s)	920
Eco47I	GGWCC	1 cut(s)	675
Eco57I	CTGAAG	3 cut(s)	93, 474, 997
Eco81I	CCTNAGG	3 cut(s)	24, 54, 495
EcoT14I	CCWWGG	3 cut(s)	930, 974, 984
EcoT22I	ATGCAT	3 cut(s)	240, 531, 1036
ErhI	CCWWGG	3 cut(s)	930, 974, 984
FaeI	CATG	4 cut(s)	529, 949, 988, 1038
FaiI	YATR	8 cut(s)	234, 236, 527, 566, 947, 986, 1036, 1046
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	4 cut(s)	525, 945, 984, 1034
FauI	CCCGC	1 cut(s)	902
Fnu4HI	GCNGC	6 cut(s)	200, 831, 885, 888, 891, 894
FokI	GGATG	2 cut(s)	586, 917
Fsp4HI	GCNGC	6 cut(s)	200, 831, 885, 888, 891, 894
FspBI	CTAG	2 cut(s)	255, 653
GluI	GCNGC	6 cut(s)	200, 831, 885, 888, 891, 894
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	170, 647, 830
HapII	CCGG	4 cut(s)	644, 678, 710, 902
Hin1II	CATG	4 cut(s)	529, 949, 988, 1038
HinfI	GANTC	5 cut(s)	228, 319, 375, 388, 587
HpaII	CCGG	4 cut(s)	644, 678, 710, 902
HphI	GGTGA	8 cut(s)	73, 191, 631, 782, 791, 815, 836, 875
Hpy166II	GTNNAC	3 cut(s)	523, 545, 667
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	6 cut(s)	212, 265, 370, 379, 556, 946
Hpy8I	GTNNAC	3 cut(s)	523, 545, 667
HpyAV	CCTTC	6 cut(s)	94, 239, 340, 712, 770, 869
HpyCH4III	ACNGT	2 cut(s)	508, 625
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	5 cut(s)	238, 315, 529, 545, 1034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	312, 836, 876, 890, 893
HpyF3I	CTNAG	7 cut(s)	24, 54, 90, 117, 224, 435, 495
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	4 cut(s)	529, 949, 988, 1038
Kzo9I	GATC	5 cut(s)	352, 601, 611, 640, 1008
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	3 cut(s)	877, 880, 899
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	255, 653
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	7 cut(s)	320, 389, 619, 779, 803, 863, 916
MalI	GATC	5 cut(s)	354, 603, 613, 642, 1010
MboI	GATC	5 cut(s)	352, 601, 611, 640, 1008
MflI	RGATCY	2 cut(s)	601, 1008
MhlI	GDGCHC	4 cut(s)	225, 308, 516, 547
MluCI	AATT	2 cut(s)	216, 961
MlyI	GAGTC	4 cut(s)	237, 328, 384, 397
Mph1103I	ATGCAT	3 cut(s)	240, 531, 1036
MslI	CAYNNNNRTG	2 cut(s)	506, 509
MspA1I	CMGCKG	3 cut(s)	116, 434, 890
MspI	CCGG	4 cut(s)	644, 678, 710, 902
MwoI	GCNNNNNNNGC	5 cut(s)	312, 836, 876, 890, 893
NcoI	CCATGG	1 cut(s)	984
NdeII	GATC	5 cut(s)	352, 601, 611, 640, 1008
NlaIII	CATG	4 cut(s)	529, 949, 988, 1038
NlaIV	GGNNCC	1 cut(s)	883
NmuCI	GTSAC	6 cut(s)	320, 389, 619, 779, 803, 863
NsiI	ATGCAT	3 cut(s)	240, 531, 1036
NspI	RCATGY	2 cut(s)	529, 1038
OliI	CACNNNNGTG	1 cut(s)	509
PagI	TCATGA	1 cut(s)	945
PciSI	GCTCTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	6 cut(s)	201, 832, 886, 889, 892, 895
PleI	GAGTC	4 cut(s)	236, 327, 383, 396
PpsI	GAGTC	4 cut(s)	236, 327, 383, 396
Ppu21I	YACGTR	1 cut(s)	664
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	883
PspPI	GGNCC	1 cut(s)	675
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	2 cut(s)	601, 1008
PvuII	CAGCTG	3 cut(s)	116, 434, 890
RsaI	GTAC	3 cut(s)	662, 959, 992
RsaNI	GTAC	3 cut(s)	661, 958, 991
RseI	CAYNNNNRTG	2 cut(s)	506, 509
SapI	GCTCTTC	1 cut(s)	480
SatI	GCNGC	6 cut(s)	200, 831, 885, 888, 891, 894
Sau3AI	GATC	5 cut(s)	352, 601, 611, 640, 1008
Sau96I	GGNCC	1 cut(s)	675
SchI	GAGTC	4 cut(s)	237, 328, 384, 397
SduI	GDGCHC	4 cut(s)	225, 308, 516, 547
SfaNI	GCATC	1 cut(s)	172
SinI	GGWCC	1 cut(s)	675
SmiMI	CAYNNNNRTG	2 cut(s)	506, 509
SmlI	CTYRAG	2 cut(s)	210, 515
SmoI	CTYRAG	2 cut(s)	210, 515
Sse9I	AATT	2 cut(s)	216, 961
SsiI	CCGC	6 cut(s)	197, 200, 831, 879, 885, 909
SspMI	CTAG	2 cut(s)	255, 653
StyI	CCWWGG	3 cut(s)	930, 974, 984
TaaI	ACNGT	2 cut(s)	508, 625
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	1 cut(s)	369
TasI	AATT	2 cut(s)	216, 961
TatI	WGTACW	1 cut(s)	957
TauI	GCSGC	3 cut(s)	202, 833, 887
TfiI	GAWTC	1 cut(s)	587
TscAI	CASTG	3 cut(s)	313, 511, 1021
TseFI	GTSAC	6 cut(s)	320, 389, 619, 779, 803, 863
TseI	GCWGC	3 cut(s)	887, 890, 893
Tsp45I	GTSAC	6 cut(s)	320, 389, 619, 779, 803, 863
TspDTI	ATGAA	4 cut(s)	590, 888, 934, 962
TspRI	CASTG	3 cut(s)	313, 511, 1021
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	675
XceI	RCATGY	2 cut(s)	529, 1038
XspI	CTAG	2 cut(s)	255, 653
Zsp2I	ATGCAT	3 cut(s)	240, 531, 1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.