Rmu_sc0007645.1_g000012

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007645.1
Physical Location & Seq
Reverse (-)
49613 .. 51756
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007645.1_g000012.1.cds

Sequence Viewer

Length: 1728 bp
atgagtttgaggtacttagtttccaggcgatcagtgtcaaaaatcactgctaggcttaggtctcagtatgccgctgcgtatggcttcgcaaccattgcagacccaatacccagttcatttcgttctgcaactcatcatggtgggtctaaacctctgaaaaaccctaggtacccaatacccatgaggtcgtttagtagaggcattcactctgctcaagtggttgtttcggtggattcggaggaggaggaggaggaagaagatggaggcattaatgatttcttgtcccgattcgtgtggattatacggcagaagctcaatgtggcttacccgggttgcgacaaggaaactgttgatgggatgctgatggttattgtgcagagggttgtggaggagatggagcagggcgggtttgagcagatgcttggcgagaggcagggtgctgctccgtcgcaggattttagtgaggatttgtggagaacggtgtgggaggtgagcaatatggttttggatgacatgaggaaggaagcgaggaaggagaaaatgaaggggtttctgcacgctgaggaagtcaaggagatgtgtaggtttgctggtgaagttggtatccggggggatatgcttagggagctcaggttcaagtgggctcgcgagaagatggaggagactgagttttatgagagcttggagcttcttagagaacaagagaaagcccaagagaaaggggaggaggaaggagaggttgtgccagctgaggaggatggtgtaactgaggtgaatcctaaggttggctctcttcccaagaggcgagggaagataaggtacaaaatttatggtcttgatctctctgatccgaagtgggttgaagttgttgatagaaaccatgaggcaggggaggtcatttgtccccacgaaccgaaaccaatatctgggaaatgcaagctggtctacaattccatgatcaaggcatatgtaaatgctaaccaaccaaaattgggggagtcattgatgagagagatggaatcaagagacatcaaacccacaaaacaaatttacatggcattgcttcaatcatttgcccaacttggtgatgtgaagggagcagaacgaattgtcaacactatgattatggcaggttttcagccaactttagaatcttgttcagtgcttgttgaggcatatggaaaagctggtgaccctgatcaggccagacacaactttgattacataataaaagttgggcacaaacctgacgacaagtgcactgcgagcatgattgcagcttatgaaaagaagaatttactcgataaggcactggatttgttgttgcagcttgaaaaggatggctttgagccgggagttgctacttacacagttcttgtagattggctgggaaaactggagctagttagtgaggctgaacagctattggacaaaattgctgagctgggtgaggctcctccattgcaacttcatgtaagcatttgcgatatgtatgctagggctggatttgagaaaaaggcactacaagctttgggagttttggaggctaagaaggagcaactgagtttagatgactttgagacaattatcaaggggcttatggctggtggattttttcaggatgctcagaggatacagggagtgatggaggctcagggttttgttgcgtcacagcaacttcagttgcacctagtggctaaaagtttaacctcaagaggccatcaatga

Protein Analysis

575

Amino Acids

64.77

Weight (kDa)

5.41

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011367)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1121
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 926
AccI GTMKAC 1 cut(s) 945
AccII CGCG 1 cut(s) 648
AciI CCGC 2 cut(s) 72, 405
AclWI GGATC 1 cut(s) 842
AcsI RAATTY 3 cut(s) 825, 1047, 1294
AcuI CTGAAG 1 cut(s) 1664
AdeI CACNNNGTG 1 cut(s) 1693
AfaI GTAC 3 cut(s) 14, 170, 821
AfiI CCNNNNNNNGG 4 cut(s) 785, 926, 992, 1201
AgsI TTSAA 4 cut(s) 637, 863, 1067, 1334
AjnI CCWGG 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
Alw21I GWGCWC 2 cut(s) 630, 1262
Alw26I GTCTC 4 cut(s) 66, 656, 1020, 1574
Alw44I GTGCAC 1 cut(s) 1258
AlwI GGATC 1 cut(s) 842
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 2 cut(s) 1203, 1717
ApaLI GTGCAC 1 cut(s) 1258
ApeKI GCWGC 4 cut(s) 74, 440, 1277, 1327
ApoI RAATTY 3 cut(s) 825, 1047, 1294
AseI ATTAAT 1 cut(s) 270
Asp718I GGTACC 1 cut(s) 168
AspA2I CCTAGG 1 cut(s) 164
AsuC2I CCSGG 4 cut(s) 329, 330, 608, 1353
AsuHPI GGTGA 6 cut(s) 502, 605, 784, 1097, 1202, 1460
AvaI CYCGRG 1 cut(s) 328
AvrII CCTAGG 1 cut(s) 164
AxyI CCTNAGG 1 cut(s) 780
BaeGI GKGCMC 2 cut(s) 1242, 1262
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 2 cut(s) 630, 646
BarI GAAGNNNNNNTAC 2 cut(s) 803, 835
Bbv12I GWGCWC 2 cut(s) 630, 1262
BbvCI CCTCAGC 2 cut(s) 561, 750
BbvI GCAGC 4 cut(s) 61, 427, 1289, 1339
BccI CCATC 9 cut(s) 254, 347, 358, 388, 649, 752, 1009, 1334, 1639
BceAI ACGGC 1 cut(s) 320
BcgI CGANNNNNNTGC 2 cut(s) 1475, 1509
BciT130I CCWGG 1 cut(s) 25
BciVI GTATCC 2 cut(s) 614, 1626
BclI TGATCA 2 cut(s) 957, 1198
BcnI CCSGG 4 cut(s) 329, 330, 608, 1353
BcoDI GTCTC 4 cut(s) 66, 656, 1020, 1574
BfaI CTAG 5 cut(s) 51, 165, 1403, 1497, 1691
BfuAI ACCTGC 1 cut(s) 1121
BfuI GTATCC 2 cut(s) 614, 1626
BisI GCNGC 5 cut(s) 72, 75, 441, 1278, 1328
BlnI CCTAGG 1 cut(s) 164
BlpI GCTNAGC 1 cut(s) 1440
BlsI GCNGC 5 cut(s) 73, 76, 442, 1279, 1329
Bme1390I CCNGG 5 cut(s) 25, 329, 330, 608, 1353
BmeT110I CYCGRG 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 170, 1455
BmrFI CCNGG 5 cut(s) 25, 329, 330, 608, 1353
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 3 cut(s) 348, 408, 1612
BmuI ACTGGG 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 1418
Bpu10I CCTNAGC 6 cut(s) 56, 561, 620, 629, 750, 1653
Bpu1102I GCTNAGC 1 cut(s) 1440
BpuEI CTTGAG 2 cut(s) 198, 1696
BpuMI CCSGG 4 cut(s) 329, 330, 608, 1353
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 164, 328, 607
BsaXI ACNNNNNCTCC 6 cut(s) 617, 647, 653, 683, 726, 756
Bsc4I CCNNNNNNNGG 4 cut(s) 785, 926, 992, 1201
Bse1I ACTGG 3 cut(s) 111, 1317, 1401
Bse21I CCTNAGG 1 cut(s) 780
Bse3DI GCAATG 3 cut(s) 93, 1058, 1460
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 3 cut(s) 164, 328, 607
BseGI GGATG 5 cut(s) 363, 514, 763, 1345, 1627
BseLI CCNNNNNNNGG 4 cut(s) 785, 926, 992, 1201
BseMI GCAATG 3 cut(s) 93, 1058, 1460
BseNI ACTGG 3 cut(s) 111, 1317, 1401
BseRI GAGGAG 9 cut(s) 254, 257, 260, 263, 404, 674, 740, 767, 1446
BseSI GKGCMC 2 cut(s) 1242, 1262
BseXI GCAGC 4 cut(s) 61, 427, 1289, 1339
BseYI CCCAGC 2 cut(s) 1387, 1444
BsgI GTGCAG 2 cut(s) 395, 539
Bsh1236I CGCG 1 cut(s) 648
BshFI GGCC 2 cut(s) 1205, 1719
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 630, 1262
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 3 cut(s) 329, 607, 1352
BslFI GGGAC 2 cut(s) 268, 888
BslI CCNNNNNNNGG 4 cut(s) 785, 926, 992, 1201
BsmAI GTCTC 4 cut(s) 66, 656, 1020, 1574
BsmFI GGGAC 2 cut(s) 268, 888
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 2 cut(s) 1205, 1719
Bso31I GGTCTC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 328
Bsp1286I GDGCHC 4 cut(s) 630, 646, 1242, 1262
Bsp143I GATC 5 cut(s) 29, 838, 847, 957, 1198
Bsp1720I GCTNAGC 1 cut(s) 1440
Bsp68I TCGCGA 1 cut(s) 648
BspACI CCGC 2 cut(s) 72, 405
BspANI GGCC 2 cut(s) 1205, 1719
BspFNI CGCG 1 cut(s) 648
BspLI GGNNCC 2 cut(s) 170, 1455
BspMI ACCTGC 1 cut(s) 1121
BspPI GGATC 1 cut(s) 842
BspT107I GGYRCC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 66
BsrDI GCAATG 3 cut(s) 93, 1058, 1460
BsrI ACTGG 3 cut(s) 111, 1317, 1401
BssECI CCNNGG 3 cut(s) 164, 328, 607
BssMI GATC 5 cut(s) 29, 838, 847, 957, 1198
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 3 cut(s) 349, 481, 1372
Bst6I CTCTTC 1 cut(s) 798
BstAPI GCANNNNNTGC 1 cut(s) 95
BstC8I GCNNGC 5 cut(s) 558, 646, 747, 938, 1267
BstEII GGTNACC 1 cut(s) 1190
BstF5I GGATG 5 cut(s) 363, 514, 763, 1345, 1627
BstFNI CGCG 1 cut(s) 648
BstKTI GATC 5 cut(s) 32, 841, 850, 960, 1201
BstMAI GTCTC 4 cut(s) 66, 656, 1020, 1574
BstMBI GATC 5 cut(s) 29, 838, 847, 957, 1198
BstMWI GCNNNNNNNGC 4 cut(s) 95, 625, 1266, 1526
BstNI CCWGG 1 cut(s) 25
BstPI GGTNACC 1 cut(s) 1190
BstSCI CCNGG 5 cut(s) 23, 327, 328, 606, 1351
BstSLI GKGCMC 2 cut(s) 1242, 1262
BstUI CGCG 1 cut(s) 648
BstV1I GCAGC 4 cut(s) 61, 427, 1289, 1339
Bsu36I CCTNAGG 1 cut(s) 780
BsuI GTATCC 2 cut(s) 614, 1626
BsuRI GGCC 2 cut(s) 1205, 1719
BtsCI GGATG 5 cut(s) 363, 514, 763, 1345, 1627
BtsI GCAGTG 2 cut(s) 45, 1260
BtsIMutI CAGTG 5 cut(s) 39, 45, 1167, 1260, 1310
BtuMI TCGCGA 1 cut(s) 648
BveI ACCTGC 1 cut(s) 1121
Cac8I GCNNGC 5 cut(s) 558, 646, 747, 938, 1267
Cfr9I CCCGGG 1 cut(s) 328
CseI GACGC 1 cut(s) 1656
Csp6I GTAC 3 cut(s) 13, 169, 820
CviAII CATG 8 cut(s) 137, 181, 514, 881, 955, 1054, 1270, 1472
CviQI GTAC 3 cut(s) 13, 169, 820
DpnI GATC 5 cut(s) 31, 840, 849, 959, 1200
DpnII GATC 5 cut(s) 29, 838, 847, 957, 1198
DraIII CACNNNGTG 1 cut(s) 1693
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Ecl136II GAGCTC 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 2 cut(s) 630, 646
Eco31I GGTCTC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 628
Eco57I CTGAAG 1 cut(s) 1664
Eco81I CCTNAGG 1 cut(s) 780
Eco88I CYCGRG 1 cut(s) 328
Eco91I GGTNACC 1 cut(s) 1190
EcoICRI GAGCTC 1 cut(s) 628
EcoO65I GGTNACC 1 cut(s) 1190
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 2 cut(s) 630, 646
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 8 cut(s) 140, 184, 517, 884, 958, 1057, 1273, 1475
FalI AAGNNNNNCTT 2 cut(s) 1328, 1360
FaqI GGGAC 2 cut(s) 268, 888
FatI CATG 8 cut(s) 136, 180, 513, 880, 954, 1053, 1269, 1471
FauI CCCGC 1 cut(s) 398
FauNDI CATATG 2 cut(s) 967, 1177
FbaI TGATCA 2 cut(s) 957, 1198
FblI GTMKAC 1 cut(s) 945
Fnu4HI GCNGC 5 cut(s) 72, 75, 441, 1278, 1328
FokI GGATG 5 cut(s) 370, 521, 770, 1352, 1634
FriOI GRGCYC 2 cut(s) 630, 646
Fsp4HI GCNGC 5 cut(s) 72, 75, 441, 1278, 1328
FspBI CTAG 5 cut(s) 51, 165, 1403, 1497, 1691
GluI GCNGC 5 cut(s) 72, 75, 441, 1278, 1328
GsaI CCCAGC 2 cut(s) 1391, 1448
GsuI CTGGAG 1 cut(s) 1418
HaeIII GGCC 2 cut(s) 1205, 1719
HapII CCGG 3 cut(s) 329, 607, 1352
HgaI GACGC 1 cut(s) 1656
Hin1II CATG 8 cut(s) 140, 184, 517, 884, 958, 1057, 1273, 1475
HincII GTYRAC 1 cut(s) 1114
HindII GTYRAC 1 cut(s) 1114
HindIII AAGCTT 1 cut(s) 1527
HinfI GANTC 6 cut(s) 233, 288, 775, 998, 1019, 1151
HpaII CCGG 3 cut(s) 329, 607, 1352
HphI GGTGA 6 cut(s) 502, 605, 784, 1097, 1202, 1460
Hpy166II GTNNAC 3 cut(s) 946, 1114, 1260
Hpy188I TCNGA 5 cut(s) 156, 238, 847, 852, 1629
Hpy188III TCNNGA 6 cut(s) 285, 647, 836, 1023, 1619, 1713
Hpy8I GTNNAC 3 cut(s) 946, 1114, 1260
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 6 cut(s) 514, 526, 538, 725, 1087, 1546
HpyCH4III ACNGT 3 cut(s) 349, 481, 1372
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 625, 1266, 1526
Hsp92II CATG 8 cut(s) 140, 184, 517, 884, 958, 1057, 1273, 1475
KpnI GGTACC 1 cut(s) 172
Ksp22I TGATCA 2 cut(s) 957, 1198
Kzo9I GATC 5 cut(s) 29, 838, 847, 957, 1198
LmnI GCTCC 8 cut(s) 397, 448, 625, 685, 1097, 1399, 1459, 1555
Lsp1109I GCAGC 4 cut(s) 61, 427, 1289, 1339
LweI GCATC 3 cut(s) 348, 408, 1612
MaeI CTAG 5 cut(s) 51, 165, 1403, 1497, 1691
MaeIII GTNAC 3 cut(s) 763, 1190, 1668
MalI GATC 5 cut(s) 31, 840, 849, 959, 1200
MboI GATC 5 cut(s) 29, 838, 847, 957, 1198
MboII GAAGA 6 cut(s) 266, 269, 664, 785, 823, 1303
MhlI GDGCHC 4 cut(s) 630, 646, 1242, 1262
MluCI AATT 8 cut(s) 825, 949, 989, 1047, 1107, 1294, 1434, 1584
MlyI GAGTC 1 cut(s) 1007
MseI TTAA 2 cut(s) 270, 1706
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 2 cut(s) 74, 749
MspI CCGG 3 cut(s) 329, 607, 1352
MspR9I CCNGG 5 cut(s) 25, 329, 330, 608, 1353
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 648
MwoI GCNNNNNNNGC 4 cut(s) 95, 625, 1266, 1526
NciI CCSGG 4 cut(s) 329, 330, 608, 1353
NdeI CATATG 2 cut(s) 967, 1177
NdeII GATC 5 cut(s) 29, 838, 847, 957, 1198
NlaIII CATG 8 cut(s) 140, 184, 517, 884, 958, 1057, 1273, 1475
NlaIV GGNNCC 2 cut(s) 170, 1455
NmuCI GTSAC 2 cut(s) 1190, 1668
NruI TCGCGA 1 cut(s) 648
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 5 cut(s) 233, 288, 775, 1019, 1151
PflMI CCANNNNNTGG 1 cut(s) 926
PkrI GCNGC 5 cut(s) 73, 76, 442, 1279, 1329
PleI GAGTC 1 cut(s) 1006
PpsI GAGTC 1 cut(s) 1006
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 23
PspEI GGTNACC 1 cut(s) 1190
PspFI CCCAGC 2 cut(s) 1387, 1444
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 170, 1455
PvuII CAGCTG 1 cut(s) 749
RruI TCGCGA 1 cut(s) 648
RsaI GTAC 3 cut(s) 14, 170, 821
RsaNI GTAC 3 cut(s) 13, 169, 820
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 1 cut(s) 630
SaqAI TTAA 2 cut(s) 270, 1706
SatI GCNGC 5 cut(s) 72, 75, 441, 1278, 1328
Sau3AI GATC 5 cut(s) 29, 838, 847, 957, 1198
SchI GAGTC 1 cut(s) 1007
ScrFI CCNGG 5 cut(s) 25, 329, 330, 608, 1353
SduI GDGCHC 4 cut(s) 630, 646, 1242, 1262
SfaNI GCATC 3 cut(s) 348, 408, 1612
SmaI CCCGGG 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 2 cut(s) 213, 1711
SmoI CTYRAG 2 cut(s) 213, 1711
Sse9I AATT 8 cut(s) 825, 949, 989, 1047, 1107, 1294, 1434, 1584
SsiI CCGC 2 cut(s) 72, 405
SspMI CTAG 5 cut(s) 51, 165, 1403, 1497, 1691
SstI GAGCTC 1 cut(s) 630
StyD4I CCNGG 5 cut(s) 23, 327, 328, 606, 1351
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 349, 481, 1372
TaqI TCGA 1 cut(s) 1302
TasI AATT 8 cut(s) 825, 949, 989, 1047, 1107, 1294, 1434, 1584
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 5 cut(s) 233, 288, 775, 1019, 1151
Tru1I TTAA 2 cut(s) 270, 1706
Tru9I TTAA 2 cut(s) 270, 1706
TscAI CASTG 5 cut(s) 39, 52, 1167, 1267, 1317
TseFI GTSAC 2 cut(s) 1190, 1668
TseI GCWGC 4 cut(s) 74, 440, 1277, 1327
Tsp45I GTSAC 2 cut(s) 1190, 1668
TspDTI ATGAA 4 cut(s) 105, 557, 1299, 1460
TspGWI ACGGA 1 cut(s) 435
TspMI CCCGGG 1 cut(s) 328
TspRI CASTG 5 cut(s) 39, 52, 1167, 1267, 1317
Van91I CCANNNNNTGG 1 cut(s) 926
VneI GTGCAC 1 cut(s) 1258
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 3 cut(s) 825, 1047, 1294
XmaI CCCGGG 1 cut(s) 328
XmaJI CCTAGG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 945
XspI CTAG 5 cut(s) 51, 165, 1403, 1497, 1691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.