Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19520 AT1G19520 |
| fragaria_vesca | FvH4_6g24430 |
| malus_domestica | MD03G1139500.v1.1 MD11G1162300.v1.1 |
| prunus_persica | Prupe.6G124500_v2.0.a1 |
| pyrus_communis | pycom03g09450 pycom11g13170 |
| rosa_chinensis | RchiOBHm_Chr7g0207751 |
| rosa_laevigata | RLG00000003290 |
| rosa_multiflora | Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012 |
| rosa_roxburghii | Rroxscaffold_3G00251180 |
| rosa_rugosa | Rorug07G0099500 Rorug07G0099600 |
| rosa_samantha | Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800 |
| rosa_wichuraiana | Rw7G019920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1121 |
| Acc65I | GGTACC | 1 cut(s) | 168 |
| AccB1I | GGYRCC | 1 cut(s) | 168 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 926 |
| AccI | GTMKAC | 1 cut(s) | 945 |
| AccII | CGCG | 1 cut(s) | 648 |
| AciI | CCGC | 2 cut(s) | 72, 405 |
| AclWI | GGATC | 1 cut(s) | 842 |
| AcsI | RAATTY | 3 cut(s) | 825, 1047, 1294 |
| AcuI | CTGAAG | 1 cut(s) | 1664 |
| AdeI | CACNNNGTG | 1 cut(s) | 1693 |
| AfaI | GTAC | 3 cut(s) | 14, 170, 821 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 785, 926, 992, 1201 |
| AgsI | TTSAA | 4 cut(s) | 637, 863, 1067, 1334 |
| AjnI | CCWGG | 1 cut(s) | 23 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 97, 129 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 617, 649 |
| Alw21I | GWGCWC | 2 cut(s) | 630, 1262 |
| Alw26I | GTCTC | 4 cut(s) | 66, 656, 1020, 1574 |
| Alw44I | GTGCAC | 1 cut(s) | 1258 |
| AlwI | GGATC | 1 cut(s) | 842 |
| Ama87I | CYCGRG | 1 cut(s) | 328 |
| AoxI | GGCC | 2 cut(s) | 1203, 1717 |
| ApaLI | GTGCAC | 1 cut(s) | 1258 |
| ApeKI | GCWGC | 4 cut(s) | 74, 440, 1277, 1327 |
| ApoI | RAATTY | 3 cut(s) | 825, 1047, 1294 |
| AseI | ATTAAT | 1 cut(s) | 270 |
| Asp718I | GGTACC | 1 cut(s) | 168 |
| AspA2I | CCTAGG | 1 cut(s) | 164 |
| AsuC2I | CCSGG | 4 cut(s) | 329, 330, 608, 1353 |
| AsuHPI | GGTGA | 6 cut(s) | 502, 605, 784, 1097, 1202, 1460 |
| AvaI | CYCGRG | 1 cut(s) | 328 |
| AvrII | CCTAGG | 1 cut(s) | 164 |
| AxyI | CCTNAGG | 1 cut(s) | 780 |
| BaeGI | GKGCMC | 2 cut(s) | 1242, 1262 |
| BanI | GGYRCC | 1 cut(s) | 168 |
| BanII | GRGCYC | 2 cut(s) | 630, 646 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 803, 835 |
| Bbv12I | GWGCWC | 2 cut(s) | 630, 1262 |
| BbvCI | CCTCAGC | 2 cut(s) | 561, 750 |
| BbvI | GCAGC | 4 cut(s) | 61, 427, 1289, 1339 |
| BccI | CCATC | 9 cut(s) | 254, 347, 358, 388, 649, 752, 1009, 1334, 1639 |
| BceAI | ACGGC | 1 cut(s) | 320 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1475, 1509 |
| BciT130I | CCWGG | 1 cut(s) | 25 |
| BciVI | GTATCC | 2 cut(s) | 614, 1626 |
| BclI | TGATCA | 2 cut(s) | 957, 1198 |
| BcnI | CCSGG | 4 cut(s) | 329, 330, 608, 1353 |
| BcoDI | GTCTC | 4 cut(s) | 66, 656, 1020, 1574 |
| BfaI | CTAG | 5 cut(s) | 51, 165, 1403, 1497, 1691 |
| BfuAI | ACCTGC | 1 cut(s) | 1121 |
| BfuI | GTATCC | 2 cut(s) | 614, 1626 |
| BisI | GCNGC | 5 cut(s) | 72, 75, 441, 1278, 1328 |
| BlnI | CCTAGG | 1 cut(s) | 164 |
| BlpI | GCTNAGC | 1 cut(s) | 1440 |
| BlsI | GCNGC | 5 cut(s) | 73, 76, 442, 1279, 1329 |
| Bme1390I | CCNGG | 5 cut(s) | 25, 329, 330, 608, 1353 |
| BmeT110I | CYCGRG | 1 cut(s) | 328 |
| BmiI | GGNNCC | 2 cut(s) | 170, 1455 |
| BmrFI | CCNGG | 5 cut(s) | 25, 329, 330, 608, 1353 |
| BmrI | ACTGGG | 1 cut(s) | 105 |
| BmsI | GCATC | 3 cut(s) | 348, 408, 1612 |
| BmuI | ACTGGG | 1 cut(s) | 105 |
| BpmI | CTGGAG | 1 cut(s) | 1418 |
| Bpu10I | CCTNAGC | 6 cut(s) | 56, 561, 620, 629, 750, 1653 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1440 |
| BpuEI | CTTGAG | 2 cut(s) | 198, 1696 |
| BpuMI | CCSGG | 4 cut(s) | 329, 330, 608, 1353 |
| BsaI | GGTCTC | 1 cut(s) | 66 |
| BsaJI | CCNNGG | 3 cut(s) | 164, 328, 607 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 617, 647, 653, 683, 726, 756 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 785, 926, 992, 1201 |
| Bse1I | ACTGG | 3 cut(s) | 111, 1317, 1401 |
| Bse21I | CCTNAGG | 1 cut(s) | 780 |
| Bse3DI | GCAATG | 3 cut(s) | 93, 1058, 1460 |
| BseBI | CCWGG | 1 cut(s) | 25 |
| BseDI | CCNNGG | 3 cut(s) | 164, 328, 607 |
| BseGI | GGATG | 5 cut(s) | 363, 514, 763, 1345, 1627 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 785, 926, 992, 1201 |
| BseMI | GCAATG | 3 cut(s) | 93, 1058, 1460 |
| BseNI | ACTGG | 3 cut(s) | 111, 1317, 1401 |
| BseRI | GAGGAG | 9 cut(s) | 254, 257, 260, 263, 404, 674, 740, 767, 1446 |
| BseSI | GKGCMC | 2 cut(s) | 1242, 1262 |
| BseXI | GCAGC | 4 cut(s) | 61, 427, 1289, 1339 |
| BseYI | CCCAGC | 2 cut(s) | 1387, 1444 |
| BsgI | GTGCAG | 2 cut(s) | 395, 539 |
| Bsh1236I | CGCG | 1 cut(s) | 648 |
| BshFI | GGCC | 2 cut(s) | 1205, 1719 |
| BshNI | GGYRCC | 1 cut(s) | 168 |
| BsiHKAI | GWGCWC | 2 cut(s) | 630, 1262 |
| BsiHKCI | CYCGRG | 1 cut(s) | 328 |
| BsiSI | CCGG | 3 cut(s) | 329, 607, 1352 |
| BslFI | GGGAC | 2 cut(s) | 268, 888 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 785, 926, 992, 1201 |
| BsmAI | GTCTC | 4 cut(s) | 66, 656, 1020, 1574 |
| BsmFI | GGGAC | 2 cut(s) | 268, 888 |
| BsmI | GAATGC | 1 cut(s) | 201 |
| BsnI | GGCC | 2 cut(s) | 1205, 1719 |
| Bso31I | GGTCTC | 1 cut(s) | 66 |
| BsoBI | CYCGRG | 1 cut(s) | 328 |
| Bsp1286I | GDGCHC | 4 cut(s) | 630, 646, 1242, 1262 |
| Bsp143I | GATC | 5 cut(s) | 29, 838, 847, 957, 1198 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1440 |
| Bsp68I | TCGCGA | 1 cut(s) | 648 |
| BspACI | CCGC | 2 cut(s) | 72, 405 |
| BspANI | GGCC | 2 cut(s) | 1205, 1719 |
| BspFNI | CGCG | 1 cut(s) | 648 |
| BspLI | GGNNCC | 2 cut(s) | 170, 1455 |
| BspMI | ACCTGC | 1 cut(s) | 1121 |
| BspPI | GGATC | 1 cut(s) | 842 |
| BspT107I | GGYRCC | 1 cut(s) | 168 |
| BspTNI | GGTCTC | 1 cut(s) | 66 |
| BsrDI | GCAATG | 3 cut(s) | 93, 1058, 1460 |
| BsrI | ACTGG | 3 cut(s) | 111, 1317, 1401 |
| BssECI | CCNNGG | 3 cut(s) | 164, 328, 607 |
| BssMI | GATC | 5 cut(s) | 29, 838, 847, 957, 1198 |
| BssT1I | CCWWGG | 1 cut(s) | 164 |
| Bst2UI | CCWGG | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 3 cut(s) | 349, 481, 1372 |
| Bst6I | CTCTTC | 1 cut(s) | 798 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 95 |
| BstC8I | GCNNGC | 5 cut(s) | 558, 646, 747, 938, 1267 |
| BstEII | GGTNACC | 1 cut(s) | 1190 |
| BstF5I | GGATG | 5 cut(s) | 363, 514, 763, 1345, 1627 |
| BstFNI | CGCG | 1 cut(s) | 648 |
| BstKTI | GATC | 5 cut(s) | 32, 841, 850, 960, 1201 |
| BstMAI | GTCTC | 4 cut(s) | 66, 656, 1020, 1574 |
| BstMBI | GATC | 5 cut(s) | 29, 838, 847, 957, 1198 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 95, 625, 1266, 1526 |
| BstNI | CCWGG | 1 cut(s) | 25 |
| BstPI | GGTNACC | 1 cut(s) | 1190 |
| BstSCI | CCNGG | 5 cut(s) | 23, 327, 328, 606, 1351 |
| BstSLI | GKGCMC | 2 cut(s) | 1242, 1262 |
| BstUI | CGCG | 1 cut(s) | 648 |
| BstV1I | GCAGC | 4 cut(s) | 61, 427, 1289, 1339 |
| Bsu36I | CCTNAGG | 1 cut(s) | 780 |
| BsuI | GTATCC | 2 cut(s) | 614, 1626 |
| BsuRI | GGCC | 2 cut(s) | 1205, 1719 |
| BtsCI | GGATG | 5 cut(s) | 363, 514, 763, 1345, 1627 |
| BtsI | GCAGTG | 2 cut(s) | 45, 1260 |
| BtsIMutI | CAGTG | 5 cut(s) | 39, 45, 1167, 1260, 1310 |
| BtuMI | TCGCGA | 1 cut(s) | 648 |
| BveI | ACCTGC | 1 cut(s) | 1121 |
| Cac8I | GCNNGC | 5 cut(s) | 558, 646, 747, 938, 1267 |
| Cfr9I | CCCGGG | 1 cut(s) | 328 |
| CseI | GACGC | 1 cut(s) | 1656 |
| Csp6I | GTAC | 3 cut(s) | 13, 169, 820 |
| CviAII | CATG | 8 cut(s) | 137, 181, 514, 881, 955, 1054, 1270, 1472 |
| CviQI | GTAC | 3 cut(s) | 13, 169, 820 |
| DpnI | GATC | 5 cut(s) | 31, 840, 849, 959, 1200 |
| DpnII | GATC | 5 cut(s) | 29, 838, 847, 957, 1198 |
| DraIII | CACNNNGTG | 1 cut(s) | 1693 |
| Eam1104I | CTCTTC | 1 cut(s) | 798 |
| EarI | CTCTTC | 1 cut(s) | 798 |
| Ecl136II | GAGCTC | 1 cut(s) | 628 |
| Eco130I | CCWWGG | 1 cut(s) | 164 |
| Eco24I | GRGCYC | 2 cut(s) | 630, 646 |
| Eco31I | GGTCTC | 1 cut(s) | 66 |
| Eco53kI | GAGCTC | 1 cut(s) | 628 |
| Eco57I | CTGAAG | 1 cut(s) | 1664 |
| Eco81I | CCTNAGG | 1 cut(s) | 780 |
| Eco88I | CYCGRG | 1 cut(s) | 328 |
| Eco91I | GGTNACC | 1 cut(s) | 1190 |
| EcoICRI | GAGCTC | 1 cut(s) | 628 |
| EcoO65I | GGTNACC | 1 cut(s) | 1190 |
| EcoRII | CCWGG | 1 cut(s) | 23 |
| EcoT14I | CCWWGG | 1 cut(s) | 164 |
| EcoT38I | GRGCYC | 2 cut(s) | 630, 646 |
| ErhI | CCWWGG | 1 cut(s) | 164 |
| FaeI | CATG | 8 cut(s) | 140, 184, 517, 884, 958, 1057, 1273, 1475 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1328, 1360 |
| FaqI | GGGAC | 2 cut(s) | 268, 888 |
| FatI | CATG | 8 cut(s) | 136, 180, 513, 880, 954, 1053, 1269, 1471 |
| FauI | CCCGC | 1 cut(s) | 398 |
| FauNDI | CATATG | 2 cut(s) | 967, 1177 |
| FbaI | TGATCA | 2 cut(s) | 957, 1198 |
| FblI | GTMKAC | 1 cut(s) | 945 |
| Fnu4HI | GCNGC | 5 cut(s) | 72, 75, 441, 1278, 1328 |
| FokI | GGATG | 5 cut(s) | 370, 521, 770, 1352, 1634 |
| FriOI | GRGCYC | 2 cut(s) | 630, 646 |
| Fsp4HI | GCNGC | 5 cut(s) | 72, 75, 441, 1278, 1328 |
| FspBI | CTAG | 5 cut(s) | 51, 165, 1403, 1497, 1691 |
| GluI | GCNGC | 5 cut(s) | 72, 75, 441, 1278, 1328 |
| GsaI | CCCAGC | 2 cut(s) | 1391, 1448 |
| GsuI | CTGGAG | 1 cut(s) | 1418 |
| HaeIII | GGCC | 2 cut(s) | 1205, 1719 |
| HapII | CCGG | 3 cut(s) | 329, 607, 1352 |
| HgaI | GACGC | 1 cut(s) | 1656 |
| Hin1II | CATG | 8 cut(s) | 140, 184, 517, 884, 958, 1057, 1273, 1475 |
| HincII | GTYRAC | 1 cut(s) | 1114 |
| HindII | GTYRAC | 1 cut(s) | 1114 |
| HindIII | AAGCTT | 1 cut(s) | 1527 |
| HinfI | GANTC | 6 cut(s) | 233, 288, 775, 998, 1019, 1151 |
| HpaII | CCGG | 3 cut(s) | 329, 607, 1352 |
| HphI | GGTGA | 6 cut(s) | 502, 605, 784, 1097, 1202, 1460 |
| Hpy166II | GTNNAC | 3 cut(s) | 946, 1114, 1260 |
| Hpy188I | TCNGA | 5 cut(s) | 156, 238, 847, 852, 1629 |
| Hpy188III | TCNNGA | 6 cut(s) | 285, 647, 836, 1023, 1619, 1713 |
| Hpy8I | GTNNAC | 3 cut(s) | 946, 1114, 1260 |
| Hpy99I | CGWCG | 1 cut(s) | 451 |
| HpyAV | CCTTC | 6 cut(s) | 514, 526, 538, 725, 1087, 1546 |
| HpyCH4III | ACNGT | 3 cut(s) | 349, 481, 1372 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 95, 625, 1266, 1526 |
| Hsp92II | CATG | 8 cut(s) | 140, 184, 517, 884, 958, 1057, 1273, 1475 |
| KpnI | GGTACC | 1 cut(s) | 172 |
| Ksp22I | TGATCA | 2 cut(s) | 957, 1198 |
| Kzo9I | GATC | 5 cut(s) | 29, 838, 847, 957, 1198 |
| LmnI | GCTCC | 8 cut(s) | 397, 448, 625, 685, 1097, 1399, 1459, 1555 |
| Lsp1109I | GCAGC | 4 cut(s) | 61, 427, 1289, 1339 |
| LweI | GCATC | 3 cut(s) | 348, 408, 1612 |
| MaeI | CTAG | 5 cut(s) | 51, 165, 1403, 1497, 1691 |
| MaeIII | GTNAC | 3 cut(s) | 763, 1190, 1668 |
| MalI | GATC | 5 cut(s) | 31, 840, 849, 959, 1200 |
| MboI | GATC | 5 cut(s) | 29, 838, 847, 957, 1198 |
| MboII | GAAGA | 6 cut(s) | 266, 269, 664, 785, 823, 1303 |
| MhlI | GDGCHC | 4 cut(s) | 630, 646, 1242, 1262 |
| MluCI | AATT | 8 cut(s) | 825, 949, 989, 1047, 1107, 1294, 1434, 1584 |
| MlyI | GAGTC | 1 cut(s) | 1007 |
| MseI | TTAA | 2 cut(s) | 270, 1706 |
| MslI | CAYNNNNRTG | 1 cut(s) | 138 |
| MspA1I | CMGCKG | 2 cut(s) | 74, 749 |
| MspI | CCGG | 3 cut(s) | 329, 607, 1352 |
| MspR9I | CCNGG | 5 cut(s) | 25, 329, 330, 608, 1353 |
| Mva1269I | GAATGC | 1 cut(s) | 201 |
| MvaI | CCWGG | 1 cut(s) | 25 |
| MvnI | CGCG | 1 cut(s) | 648 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 95, 625, 1266, 1526 |
| NciI | CCSGG | 4 cut(s) | 329, 330, 608, 1353 |
| NdeI | CATATG | 2 cut(s) | 967, 1177 |
| NdeII | GATC | 5 cut(s) | 29, 838, 847, 957, 1198 |
| NlaIII | CATG | 8 cut(s) | 140, 184, 517, 884, 958, 1057, 1273, 1475 |
| NlaIV | GGNNCC | 2 cut(s) | 170, 1455 |
| NmuCI | GTSAC | 2 cut(s) | 1190, 1668 |
| NruI | TCGCGA | 1 cut(s) | 648 |
| PctI | GAATGC | 1 cut(s) | 201 |
| PfeI | GAWTC | 5 cut(s) | 233, 288, 775, 1019, 1151 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 926 |
| PkrI | GCNGC | 5 cut(s) | 73, 76, 442, 1279, 1329 |
| PleI | GAGTC | 1 cut(s) | 1006 |
| PpsI | GAGTC | 1 cut(s) | 1006 |
| PshBI | ATTAAT | 1 cut(s) | 270 |
| Psp124BI | GAGCTC | 1 cut(s) | 630 |
| Psp6I | CCWGG | 1 cut(s) | 23 |
| PspEI | GGTNACC | 1 cut(s) | 1190 |
| PspFI | CCCAGC | 2 cut(s) | 1387, 1444 |
| PspGI | CCWGG | 1 cut(s) | 23 |
| PspN4I | GGNNCC | 2 cut(s) | 170, 1455 |
| PvuII | CAGCTG | 1 cut(s) | 749 |
| RruI | TCGCGA | 1 cut(s) | 648 |
| RsaI | GTAC | 3 cut(s) | 14, 170, 821 |
| RsaNI | GTAC | 3 cut(s) | 13, 169, 820 |
| RseI | CAYNNNNRTG | 1 cut(s) | 138 |
| SacI | GAGCTC | 1 cut(s) | 630 |
| SaqAI | TTAA | 2 cut(s) | 270, 1706 |
| SatI | GCNGC | 5 cut(s) | 72, 75, 441, 1278, 1328 |
| Sau3AI | GATC | 5 cut(s) | 29, 838, 847, 957, 1198 |
| SchI | GAGTC | 1 cut(s) | 1007 |
| ScrFI | CCNGG | 5 cut(s) | 25, 329, 330, 608, 1353 |
| SduI | GDGCHC | 4 cut(s) | 630, 646, 1242, 1262 |
| SfaNI | GCATC | 3 cut(s) | 348, 408, 1612 |
| SmaI | CCCGGG | 1 cut(s) | 330 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 138 |
| SmlI | CTYRAG | 2 cut(s) | 213, 1711 |
| SmoI | CTYRAG | 2 cut(s) | 213, 1711 |
| Sse9I | AATT | 8 cut(s) | 825, 949, 989, 1047, 1107, 1294, 1434, 1584 |
| SsiI | CCGC | 2 cut(s) | 72, 405 |
| SspMI | CTAG | 5 cut(s) | 51, 165, 1403, 1497, 1691 |
| SstI | GAGCTC | 1 cut(s) | 630 |
| StyD4I | CCNGG | 5 cut(s) | 23, 327, 328, 606, 1351 |
| StyI | CCWWGG | 1 cut(s) | 164 |
| TaaI | ACNGT | 3 cut(s) | 349, 481, 1372 |
| TaqI | TCGA | 1 cut(s) | 1302 |
| TasI | AATT | 8 cut(s) | 825, 949, 989, 1047, 1107, 1294, 1434, 1584 |
| TauI | GCSGC | 1 cut(s) | 74 |
| TfiI | GAWTC | 5 cut(s) | 233, 288, 775, 1019, 1151 |
| Tru1I | TTAA | 2 cut(s) | 270, 1706 |
| Tru9I | TTAA | 2 cut(s) | 270, 1706 |
| TscAI | CASTG | 5 cut(s) | 39, 52, 1167, 1267, 1317 |
| TseFI | GTSAC | 2 cut(s) | 1190, 1668 |
| TseI | GCWGC | 4 cut(s) | 74, 440, 1277, 1327 |
| Tsp45I | GTSAC | 2 cut(s) | 1190, 1668 |
| TspDTI | ATGAA | 4 cut(s) | 105, 557, 1299, 1460 |
| TspGWI | ACGGA | 1 cut(s) | 435 |
| TspMI | CCCGGG | 1 cut(s) | 328 |
| TspRI | CASTG | 5 cut(s) | 39, 52, 1167, 1267, 1317 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 926 |
| VneI | GTGCAC | 1 cut(s) | 1258 |
| VspI | ATTAAT | 1 cut(s) | 270 |
| XapI | RAATTY | 3 cut(s) | 825, 1047, 1294 |
| XmaI | CCCGGG | 1 cut(s) | 328 |
| XmaJI | CCTAGG | 1 cut(s) | 164 |
| XmiI | GTMKAC | 1 cut(s) | 945 |
| XspI | CTAG | 5 cut(s) | 51, 165, 1403, 1497, 1691 |