Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011367

Physical Location & Seq

Genomic Coordinates Reverse (-)

22460874 .. 22463329

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG232700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGAGTTTGAGGTACTTAGTTTCCAGGCAATCAGTGTCAAAAATCACTGCTAGGCTTCGGTCTCAGTATGCCGCTGCGTATGGTTTCGCAACCATTGCAGACCCAATACCCAGTTCATTTCGTTCTGCAACTCATCATGGTGGGTCTAAACCTCTCAAAAACCCTAGGCACCCAATACCCATGAGCTCGTTTAGTAGAGGCATTCACTCTGCTCAAGTGGTTGATTCGGTGGATTCCGAGGAGGAGGAGGAGGAAGAAGATGGAGGCATTAATGAGTTCTTGTCCCGATTCGTGTGGATTATACGGCAGAAGCTCAATGTGGCTTACCCGGGTTGCGACAAGGAAACTGTTGATGGGATGCTGATGGTTATTGTGCAGAGGGTTGTGGAGGAGATGGAGCAGGGCGGGTTTGAGCAGATGCTTGGCGAGAGGCAGGGTGCTGCTCCGTCGCAGGATTTTAGTGAGGATTTGTGGAGAACAGTGTGGGAGGTGAGCAATATGGTTTTGGATGACATGAGGAAGGAAGCGAGGAAGGAGAAAATGAAGGGGTTTCTGCATGCTGAGGAAGTCAAGGAGATGTGTAGGTTTGCTGGTGAAGTTGGTATCCGAGGGGATATGCTTAGGGAGCTCAGGTTCAAGTGGGCTCGCGAGAAGATGGAGGAGACTGAGTTTTATGAGAGCTTGGAGCTTCTTAGAGAACAAGAGAAAGCCCAAGAGAAAGGGGAGGAGGAAGGAGAGGTTGTGCAAGCTGAGGAGGATGGTGTAACTGAGGTGAATCCTAAGGATGGTTCTCTTCCCAAGAGGCGAGGGAAGATAAGGTACAAAATTTATGGTCTTGATCTCTCTGATCCGAAGTGGGTTGAAGTTGTTGATAAAATCCATGAGGCAGGGGAGGTCATTTGTCCCCAGGAACCGAAACCAATATCTGGGAAATGCAAGTTGGTTGCTGAGAGAATTCTTCAATCAAATGAGGCAGATGACATGTCTCCACTTTTGGCTGAATGGGTAGAGTTGCTCCAACCTAGTAGGATTGATTGGGACAATTTGCTTGATCAATTGAAAGAGCAGAACACCAGGTTATACTTTAAGGTGGCAGAACTTGTATTGGATGAGAAATCTTTCCAGACGAACATCCGTGACTACTCCATGCTTATCGATGCTTATGCCAAGGAAAATAACCTAGAAGATGCTGAGAGAATTTTAAAGAAGATGAATGAAAATGGGTTTGAACCTGATATCTTCACAACCACTATTTTGGTTCACATGTACAGCAAGGCAGGCAATCTTGAAGGTGCCGACCAAGCATTTAAGACATTGAAGAGCCAGGGCTTCCGACCAGATATGAAGGTCTACAATTCCATGATCAAGGCATATGTAAATGCTAACCAACCAAAATTGGGGGAGTCATTGATGAGAGAGATGGAATCAAGAGACATCAAACCCACAAAACAAATTTACATGGCATTGCTTCAATCATTTGCCCAACTTGGTGATGTGAAGGGAGCAGAACGAATTGTCAACACTATGATTATGGCAGGTTTTCAGCCAACTTTAGAATCTTGTTCAGTGCTTGTTGAGGCATATGGAAAAGCTGGTGACCCTGATCAGGCAAGGCACAACTTTGATTACATAATAAAAGTTGGGCACAAACCTGATGACAAGTGCACTGCGAGCATGATTGCAGCTTATGAAAAGAAGAATTTACTCGATAAGGCACTGGATTTGTTGTTGCAGCTTGAAAAGGATGGCTTTGAGCCGGGAGTTGCTACTTACACAGTTCTTGTAGATTGGCTGGGAAAACTGGAGCTAGTTAGTGAGGCTGAACAGCTATTGGACAAAATTGCTGAGCTGGGTGAGGCTCCTCCATTGCAACTTCATGTAAGCATTTGCGATATGTATGCTAGGGCTCGATTTGAGAAAAAGGCACTACAAGCTTTGGGAGTTTTGGAGGCTAAGAAGGAGCAACTGAGTTTAGATGACTTTGAGACAATTATCAAGGGGCTTATAGCTGGTGGATTTTTTCAGGATGCTCAGAGGATACGGGGAGTGATGGAGGCTCAGGGTTTTGTTGCGTCACAGCAACTTCAGTTGCACCTAGTGGCTAAAAGTTTAACCTCAAGAGGCCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

710

Amino Acids

80.45

Weight (kDa)

5.13

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	368 - 462	5.7e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	370 - 415	2.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	381 - 425	3.2e-10	PPR repeat family
PPR_long	PF17177	387 - 524	4e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	399 - 460	9e-11	Pentatricopeptide repeat domain
PPR_long	PF17177	424 - 597	1.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	446 - 483	4.6e-06	PPR repeat family
TPR_24	PF23276	462 - 537	8.2e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	469 - 530	8.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	558 - 599	7.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19520 AT1G19520
fragaria_vesca	FvH4_6g24430
malus_domestica	MD03G1139500.v1.1 MD11G1162300.v1.1
prunus_persica	Prupe.6G124500_v2.0.a1
pyrus_communis	pycom03g09450 pycom11g13170
rosa_chinensis	RchiOBHm_Chr7g0207751
rosa_laevigata	RLG00000003290
rosa_multiflora	Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012
rosa_roxburghii	Rroxscaffold_3G00251180
rosa_rugosa	Rorug07G0099500 Rorug07G0099600
rosa_samantha	Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800
rosa_wichuraiana	Rw7G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1526
AccB1I	GGYRCC	2 cut(s)	168, 1292
AccB7I	CCANNNNNTGG	1 cut(s)	926
AccI	GTMKAC	1 cut(s)	1350
AccII	CGCG	1 cut(s)	648
AciI	CCGC	2 cut(s)	72, 405
AclWI	GGATC	1 cut(s)	842
AcsI	RAATTY	5 cut(s)	825, 954, 1197, 1452, 1699
AcuI	CTGAAG	1 cut(s)	2069
AdeI	CACNNNGTG	1 cut(s)	2098
AfaI	GTAC	3 cut(s)	14, 821, 1268
AfiI	CCNNNNNNNGG	4 cut(s)	785, 926, 1397, 1606
AflIII	ACRYGT	2 cut(s)	981, 1263
AgsI	TTSAA	9 cut(s)	637, 863, 962, 1060, 1229, 1289, 1318, 1472, 1739
AjnI	CCWGG	4 cut(s)	23, 906, 1073, 1323
AjuI	GAANNNNNNNTTGG	4 cut(s)	97, 129, 923, 955
AloI	GAACNNNNNNTCC	2 cut(s)	617, 649
Alw21I	GWGCWC	3 cut(s)	188, 630, 1667
Alw26I	GTCTC	5 cut(s)	66, 656, 990, 1425, 1979
Alw44I	GTGCAC	1 cut(s)	1663
AlwI	GGATC	1 cut(s)	842
Ama87I	CYCGRG	1 cut(s)	328
AoxI	GGCC	1 cut(s)	2122
ApaLI	GTGCAC	1 cut(s)	1663
ApeKI	GCWGC	4 cut(s)	74, 440, 1682, 1732
ApoI	RAATTY	5 cut(s)	825, 954, 1197, 1452, 1699
AseI	ATTAAT	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	1118
AspA2I	CCTAGG	1 cut(s)	164
AsuC2I	CCSGG	3 cut(s)	329, 330, 1758
AsuHPI	GGTGA	6 cut(s)	502, 605, 784, 1502, 1607, 1865
AvaI	CYCGRG	1 cut(s)	328
AvrII	CCTAGG	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	780
BaeGI	GKGCMC	2 cut(s)	1647, 1667
BanI	GGYRCC	2 cut(s)	168, 1292
BanII	GRGCYC	4 cut(s)	188, 630, 646, 1909
BarI	GAAGNNNNNNTAC	2 cut(s)	803, 835
Bbv12I	GWGCWC	3 cut(s)	188, 630, 1667
BbvCI	CCTCAGC	2 cut(s)	561, 750
BbvI	GCAGC	4 cut(s)	61, 427, 1694, 1744
BceAI	ACGGC	1 cut(s)	320
BcgI	CGANNNNNNTGC	4 cut(s)	1145, 1179, 1880, 1914
BciT130I	CCWGG	4 cut(s)	25, 908, 1075, 1325
BciVI	GTATCC	2 cut(s)	614, 2031
BclI	TGATCA	3 cut(s)	1051, 1362, 1603
BcnI	CCSGG	3 cut(s)	329, 330, 1758
BcoDI	GTCTC	5 cut(s)	66, 656, 990, 1425, 1979
BfaI	CTAG	7 cut(s)	51, 165, 1023, 1181, 1808, 1902, 2096
BfuAI	ACCTGC	1 cut(s)	1526
BfuI	GTATCC	2 cut(s)	614, 2031
BisI	GCNGC	5 cut(s)	72, 75, 441, 1683, 1733
BlnI	CCTAGG	1 cut(s)	164
BlpI	GCTNAGC	1 cut(s)	1845
BlsI	GCNGC	5 cut(s)	73, 76, 442, 1684, 1734
Bme1390I	CCNGG	7 cut(s)	25, 329, 330, 908, 1075, 1325, 1758
BmeT110I	CYCGRG	1 cut(s)	328
BmiI	GGNNCC	4 cut(s)	170, 912, 1294, 1860
BmrFI	CCNGG	7 cut(s)	25, 329, 330, 908, 1075, 1325, 1758
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	5 cut(s)	348, 408, 1147, 1177, 2017
BmuI	ACTGGG	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	1823
Bpu10I	CCTNAGC	5 cut(s)	561, 620, 629, 750, 2058
Bpu1102I	GCTNAGC	1 cut(s)	1845
BpuEI	CTTGAG	2 cut(s)	198, 2101
BpuMI	CCSGG	3 cut(s)	329, 330, 1758
Bsa29I	ATCGAT	1 cut(s)	1155
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	7 cut(s)	164, 237, 328, 607, 906, 1167, 1324
BsaXI	ACNNNNNCTCC	6 cut(s)	617, 647, 653, 683, 726, 756
Bsc4I	CCNNNNNNNGG	4 cut(s)	785, 926, 1397, 1606
Bse1I	ACTGG	3 cut(s)	111, 1722, 1806
Bse21I	CCTNAGG	1 cut(s)	780
Bse3DI	GCAATG	3 cut(s)	93, 1463, 1865
BseBI	CCWGG	4 cut(s)	25, 908, 1075, 1325
BseCI	ATCGAT	1 cut(s)	1155
BseDI	CCNNGG	7 cut(s)	164, 237, 328, 607, 906, 1167, 1324
BseGI	GGATG	8 cut(s)	363, 514, 763, 790, 1114, 1131, 1750, 2032
BseLI	CCNNNNNNNGG	4 cut(s)	785, 926, 1397, 1606
BseMI	GCAATG	3 cut(s)	93, 1463, 1865
BseNI	ACTGG	3 cut(s)	111, 1722, 1806
BseRI	GAGGAG	9 cut(s)	254, 257, 260, 263, 404, 674, 740, 767, 1851
BseSI	GKGCMC	2 cut(s)	1647, 1667
BseXI	GCAGC	4 cut(s)	61, 427, 1694, 1744
BseYI	CCCAGC	2 cut(s)	1792, 1849
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	2124
BshNI	GGYRCC	2 cut(s)	168, 1292
BshVI	ATCGAT	1 cut(s)	1155
BsiHKAI	GWGCWC	3 cut(s)	188, 630, 1667
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	329, 1757
BslFI	GGGAC	3 cut(s)	268, 888, 1052
BslI	CCNNNNNNNGG	4 cut(s)	785, 926, 1397, 1606
BsmAI	GTCTC	5 cut(s)	66, 656, 990, 1425, 1979
BsmFI	GGGAC	3 cut(s)	268, 888, 1052
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	2124
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	328
Bsp1286I	GDGCHC	6 cut(s)	188, 630, 646, 1647, 1667, 1909
Bsp1407I	TGTACA	1 cut(s)	1266
Bsp143I	GATC	5 cut(s)	838, 847, 1051, 1362, 1603
Bsp1720I	GCTNAGC	1 cut(s)	1845
Bsp68I	TCGCGA	1 cut(s)	648
BspACI	CCGC	2 cut(s)	72, 405
BspANI	GGCC	1 cut(s)	2124
BspDI	ATCGAT	1 cut(s)	1155
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	4 cut(s)	170, 912, 1294, 1860
BspMI	ACCTGC	1 cut(s)	1526
BspPI	GGATC	1 cut(s)	842
BspQI	GCTCTTC	1 cut(s)	1313
BspT107I	GGYRCC	2 cut(s)	168, 1292
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	3 cut(s)	93, 1463, 1865
BsrGI	TGTACA	1 cut(s)	1266
BsrI	ACTGG	3 cut(s)	111, 1722, 1806
BssECI	CCNNGG	7 cut(s)	164, 237, 328, 607, 906, 1167, 1324
BssMI	GATC	5 cut(s)	838, 847, 1051, 1362, 1603
BssT1I	CCWWGG	2 cut(s)	164, 1167
Bst2UI	CCWGG	4 cut(s)	25, 908, 1075, 1325
Bst4CI	ACNGT	3 cut(s)	349, 481, 1777
Bst6I	CTCTTC	2 cut(s)	798, 1313
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	1266
BstC8I	GCNNGC	5 cut(s)	558, 646, 747, 1279, 1672
BstEII	GGTNACC	1 cut(s)	1595
BstF5I	GGATG	8 cut(s)	363, 514, 763, 790, 1114, 1131, 1750, 2032
BstFNI	CGCG	1 cut(s)	648
BstKTI	GATC	5 cut(s)	841, 850, 1054, 1365, 1606
BstMAI	GTCTC	5 cut(s)	66, 656, 990, 1425, 1979
BstMBI	GATC	5 cut(s)	838, 847, 1051, 1362, 1603
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 625, 1278, 1301, 1671, 1931
BstNI	CCWGG	4 cut(s)	25, 908, 1075, 1325
BstNSI	RCATGY	3 cut(s)	560, 985, 1267
BstPI	GGTNACC	1 cut(s)	1595
BstSCI	CCNGG	7 cut(s)	23, 327, 328, 906, 1073, 1323, 1756
BstSLI	GKGCMC	2 cut(s)	1647, 1667
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	4 cut(s)	61, 427, 1694, 1744
BstXI	CCANNNNNNTGG	1 cut(s)	1255
Bsu15I	ATCGAT	1 cut(s)	1155
Bsu36I	CCTNAGG	1 cut(s)	780
BsuI	GTATCC	2 cut(s)	614, 2031
BsuRI	GGCC	1 cut(s)	2124
BsuTUI	ATCGAT	1 cut(s)	1155
BtsCI	GGATG	8 cut(s)	363, 514, 763, 790, 1114, 1131, 1750, 2032
BtsI	GCAGTG	2 cut(s)	45, 1665
BtsIMutI	CAGTG	6 cut(s)	39, 45, 486, 1572, 1665, 1715
BtuMI	TCGCGA	1 cut(s)	648
BveI	ACCTGC	1 cut(s)	1526
Cac8I	GCNNGC	5 cut(s)	558, 646, 747, 1279, 1672
Cfr9I	CCCGGG	1 cut(s)	328
ClaI	ATCGAT	1 cut(s)	1155
CseI	GACGC	1 cut(s)	2061
CsiI	ACCWGGT	1 cut(s)	1073
Csp6I	GTAC	3 cut(s)	13, 820, 1267
CviQI	GTAC	3 cut(s)	13, 820, 1267
DpnI	GATC	5 cut(s)	840, 849, 1053, 1364, 1605
DpnII	GATC	5 cut(s)	838, 847, 1051, 1362, 1603
DraI	TTTAAA	1 cut(s)	1203
DraIII	CACNNNGTG	1 cut(s)	2098
Eam1104I	CTCTTC	2 cut(s)	798, 1313
EarI	CTCTTC	2 cut(s)	798, 1313
Ecl136II	GAGCTC	2 cut(s)	186, 628
Eco130I	CCWWGG	2 cut(s)	164, 1167
Eco24I	GRGCYC	4 cut(s)	188, 630, 646, 1909
Eco31I	GGTCTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	1237
Eco53kI	GAGCTC	2 cut(s)	186, 628
Eco57I	CTGAAG	1 cut(s)	2069
Eco81I	CCTNAGG	1 cut(s)	780
Eco88I	CYCGRG	1 cut(s)	328
Eco91I	GGTNACC	1 cut(s)	1595
EcoICRI	GAGCTC	2 cut(s)	186, 628
EcoO65I	GGTNACC	1 cut(s)	1595
EcoRI	GAATTC	1 cut(s)	954
EcoRII	CCWGG	4 cut(s)	23, 906, 1073, 1323
EcoRV	GATATC	1 cut(s)	1237
EcoT14I	CCWWGG	2 cut(s)	164, 1167
EcoT38I	GRGCYC	4 cut(s)	188, 630, 646, 1909
ErhI	CCWWGG	2 cut(s)	164, 1167
FalI	AAGNNNNNCTT	2 cut(s)	1733, 1765
FaqI	GGGAC	3 cut(s)	268, 888, 1052
FauI	CCCGC	1 cut(s)	398
FauNDI	CATATG	2 cut(s)	1372, 1582
FbaI	TGATCA	3 cut(s)	1051, 1362, 1603
FblI	GTMKAC	1 cut(s)	1350
Fnu4HI	GCNGC	5 cut(s)	72, 75, 441, 1683, 1733
FokI	GGATG	8 cut(s)	370, 521, 770, 797, 1118, 1121, 1757, 2039
FriOI	GRGCYC	4 cut(s)	188, 630, 646, 1909
Fsp4HI	GCNGC	5 cut(s)	72, 75, 441, 1683, 1733
FspBI	CTAG	7 cut(s)	51, 165, 1023, 1181, 1808, 1902, 2096
GluI	GCNGC	5 cut(s)	72, 75, 441, 1683, 1733
GsaI	CCCAGC	2 cut(s)	1796, 1853
GsuI	CTGGAG	1 cut(s)	1823
HaeIII	GGCC	1 cut(s)	2124
HapII	CCGG	2 cut(s)	329, 1757
HgaI	GACGC	1 cut(s)	2061
HincII	GTYRAC	1 cut(s)	1519
HindII	GTYRAC	1 cut(s)	1519
HindIII	AAGCTT	1 cut(s)	1932
HinfI	GANTC	7 cut(s)	224, 233, 288, 775, 1403, 1424, 1556
HpaII	CCGG	2 cut(s)	329, 1757
HphI	GGTGA	6 cut(s)	502, 605, 784, 1502, 1607, 1865
Hpy166II	GTNNAC	4 cut(s)	1261, 1351, 1519, 1665
Hpy188I	TCNGA	6 cut(s)	238, 608, 847, 852, 1334, 2034
Hpy188III	TCNNGA	8 cut(s)	285, 647, 836, 1123, 1286, 1428, 2024, 2118
Hpy8I	GTNNAC	4 cut(s)	1261, 1351, 1519, 1665
Hpy99I	CGWCG	1 cut(s)	451
HpyAV	CCTTC	8 cut(s)	514, 526, 538, 725, 1283, 1339, 1492, 1951
HpyCH4III	ACNGT	3 cut(s)	349, 481, 1777
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 625, 1278, 1301, 1671, 1931
Ksp22I	TGATCA	3 cut(s)	1051, 1362, 1603
Kzo9I	GATC	5 cut(s)	838, 847, 1051, 1362, 1603
LguI	GCTCTTC	1 cut(s)	1313
LmnI	GCTCC	9 cut(s)	397, 448, 625, 685, 1020, 1502, 1804, 1864, 1960
Lsp1109I	GCAGC	4 cut(s)	61, 427, 1694, 1744
LweI	GCATC	5 cut(s)	348, 408, 1147, 1177, 2017
MabI	ACCWGGT	1 cut(s)	1073
MaeI	CTAG	7 cut(s)	51, 165, 1023, 1181, 1808, 1902, 2096
MaeIII	GTNAC	4 cut(s)	763, 1136, 1595, 2073
MalI	GATC	5 cut(s)	840, 849, 1053, 1364, 1605
MboI	GATC	5 cut(s)	838, 847, 1051, 1362, 1603
MfeI	CAATTG	1 cut(s)	1055
MhlI	GDGCHC	6 cut(s)	188, 630, 646, 1647, 1667, 1909
MlyI	GAGTC	1 cut(s)	1412
MmeI	TCCRAC	2 cut(s)	1042, 1357
MroXI	GAANNNNTTC	1 cut(s)	1118
MseI	TTAA	5 cut(s)	270, 1086, 1202, 1308, 2111
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	329, 1757
MspR9I	CCNGG	7 cut(s)	25, 329, 330, 908, 1075, 1325, 1758
MunI	CAATTG	1 cut(s)	1055
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	4 cut(s)	25, 908, 1075, 1325
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	6 cut(s)	95, 625, 1278, 1301, 1671, 1931
NciI	CCSGG	3 cut(s)	329, 330, 1758
NdeI	CATATG	2 cut(s)	1372, 1582
NdeII	GATC	5 cut(s)	838, 847, 1051, 1362, 1603
NlaIV	GGNNCC	4 cut(s)	170, 912, 1294, 1860
NmuCI	GTSAC	3 cut(s)	1136, 1595, 2073
NruI	TCGCGA	1 cut(s)	648
NspI	RCATGY	3 cut(s)	560, 985, 1267
PaeI	GCATGC	1 cut(s)	560
PciI	ACATGT	2 cut(s)	981, 1263
PciSI	GCTCTTC	1 cut(s)	1313
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	1118
PfeI	GAWTC	6 cut(s)	224, 233, 288, 775, 1424, 1556
PflMI	CCANNNNNTGG	1 cut(s)	926
PkrI	GCNGC	5 cut(s)	73, 76, 442, 1684, 1734
PleI	GAGTC	1 cut(s)	1411
PpsI	GAGTC	1 cut(s)	1411
PscI	ACATGT	2 cut(s)	981, 1263
PshBI	ATTAAT	1 cut(s)	270
Psp124BI	GAGCTC	2 cut(s)	188, 630
Psp6I	CCWGG	4 cut(s)	23, 906, 1073, 1323
PspEI	GGTNACC	1 cut(s)	1595
PspFI	CCCAGC	2 cut(s)	1792, 1849
PspGI	CCWGG	4 cut(s)	23, 906, 1073, 1323
PspN4I	GGNNCC	4 cut(s)	170, 912, 1294, 1860
RruI	TCGCGA	1 cut(s)	648
RsaI	GTAC	3 cut(s)	14, 821, 1268
RsaNI	GTAC	3 cut(s)	13, 820, 1267
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	2 cut(s)	188, 630
SapI	GCTCTTC	1 cut(s)	1313
SaqAI	TTAA	5 cut(s)	270, 1086, 1202, 1308, 2111
SatI	GCNGC	5 cut(s)	72, 75, 441, 1683, 1733
Sau3AI	GATC	5 cut(s)	838, 847, 1051, 1362, 1603
SchI	GAGTC	1 cut(s)	1412
ScrFI	CCNGG	7 cut(s)	25, 329, 330, 908, 1075, 1325, 1758
SduI	GDGCHC	6 cut(s)	188, 630, 646, 1647, 1667, 1909
SexAI	ACCWGGT	1 cut(s)	1073
SfaNI	GCATC	5 cut(s)	348, 408, 1147, 1177, 2017
SmaI	CCCGGG	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	213, 2116
SmoI	CTYRAG	2 cut(s)	213, 2116
SphI	GCATGC	1 cut(s)	560
SsiI	CCGC	2 cut(s)	72, 405
SspMI	CTAG	7 cut(s)	51, 165, 1023, 1181, 1808, 1902, 2096
SstI	GAGCTC	2 cut(s)	188, 630
StyD4I	CCNGG	7 cut(s)	23, 327, 328, 906, 1073, 1323, 1756
StyI	CCWWGG	2 cut(s)	164, 1167
TaaI	ACNGT	3 cut(s)	349, 481, 1777
TaqI	TCGA	3 cut(s)	1155, 1707, 1909
TaqII	GACCGA	1 cut(s)	48
TatI	WGTACW	1 cut(s)	1266
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	6 cut(s)	224, 233, 288, 775, 1424, 1556
Tru1I	TTAA	5 cut(s)	270, 1086, 1202, 1308, 2111
Tru9I	TTAA	5 cut(s)	270, 1086, 1202, 1308, 2111
TscAI	CASTG	6 cut(s)	39, 52, 486, 1572, 1672, 1722
TseFI	GTSAC	3 cut(s)	1136, 1595, 2073
TseI	GCWGC	4 cut(s)	74, 440, 1682, 1732
Tsp45I	GTSAC	3 cut(s)	1136, 1595, 2073
TspDTI	ATGAA	7 cut(s)	105, 557, 1226, 1230, 1358, 1704, 1865
TspGWI	ACGGA	2 cut(s)	435, 1124
TspMI	CCCGGG	1 cut(s)	328
TspRI	CASTG	6 cut(s)	39, 52, 486, 1572, 1672, 1722
Van91I	CCANNNNNTGG	1 cut(s)	926
VneI	GTGCAC	1 cut(s)	1663
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	5 cut(s)	825, 954, 1197, 1452, 1699
XceI	RCATGY	3 cut(s)	560, 985, 1267
XmaI	CCCGGG	1 cut(s)	328
XmaJI	CCTAGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	1350
XmnI	GAANNNNTTC	1 cut(s)	1118
XspI	CTAG	7 cut(s)	51, 165, 1023, 1181, 1808, 1902, 2096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.