Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005968.1

Orthogroup ID

OG0011367

Physical Location & Seq

Genomic Coordinates Forward (+)

1349 .. 3019

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005968.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

atgagtttgaggtacttagtttccaggcaatcagtgtcaaaaatcactgctaggcttcggtctcagtatgccgctgcgtatggtttcgcaaccatggcagacccaatacccagttcatttcgttctgcaactcatcatggtgggtctaaacctctcaaaaaccctaggtacccaatacccatgaggttgtttagtagaggcattcactctgctcaagtggttgattcggtggattcggaggaggaggaggaagaagatggaggcattaatgagttcttgtcccgattcgtgtggattatacggcagaagctcaatgtggcttacccgggttgcgacaaggaaactgttgatgggatgctgatggttattgtgcagagggttgtggaggagatggagcagggcgggtttgagcagatgcttggcgaaaggcagggtgctgctccgtcgcaggattttagtgaggatttgtggagaacagtgtgggaggtgagcaatatggttttggatgacatgaggaaggaagcgaggaaggagaaaatgaaggggtttctgcatgctgaggaagtcaaggagatgtgtaggtttgctggtgaagttggtatccggggggatatgcttagggagctcaggttcaagtgggctcgcgagaagatggaggagactgagttttatgagagcttggagcttcttagagaacaagagaaagcccaagagaaaggggaggaggaaggagaggttgtgccagctgaggaggatggtgtaactgaggtgaatcctaaggttggctctcttcccaagaggcgagggaagataaggtacaaaatttatggtcttgatctctctgatccgaagtgggttgaagttgttgatagaatccatgaggcaggggaggtcatttgtccccaggaaccgaaaccaatatctgggaaatgcaagctggttactgagagaattcttcaatcaaatgaggcagatgacatgtctccacttttggctgaatgggtagagttgctccaacctagtaggattgattgggacaatttgcttgatcaattgaaagagcagaacaccaggttatactttaaggtggcagaacttgtattggatgagaaatctttccagacgaacatccgtgactactccatgcttatcgatgcttatgccaaggaaaatagcctagaagatgctgagagaattttaaagaagatgaatgaaaatgggtttgaacctgatatcttcacaaccactattttggttcacatgtacagcaaggcaggcaatcttgaaggtgccgaccaagcatttaagacattgaagagccagggcttccgaccagatatgtgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

448

Amino Acids

51.47

Weight (kDa)

5.01

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19520 AT1G19520
fragaria_vesca	FvH4_6g24430
malus_domestica	MD03G1139500.v1.1 MD11G1162300.v1.1
prunus_persica	Prupe.6G124500_v2.0.a1
pyrus_communis	pycom03g09450 pycom11g13170
rosa_chinensis	RchiOBHm_Chr7g0207751
rosa_laevigata	RLG00000003290
rosa_multiflora	Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012
rosa_roxburghii	Rroxscaffold_3G00251180
rosa_rugosa	Rorug07G0099500 Rorug07G0099600
rosa_samantha	Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800
rosa_wichuraiana	Rw7G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	2 cut(s)	168, 1289
AccB7I	CCANNNNNTGG	1 cut(s)	923
AccII	CGCG	1 cut(s)	645
AciI	CCGC	2 cut(s)	72, 402
AclWI	GGATC	1 cut(s)	839
AcsI	RAATTY	3 cut(s)	822, 951, 1194
AfaI	GTAC	4 cut(s)	14, 170, 818, 1265
AfiI	CCNNNNNNNGG	2 cut(s)	782, 923
AflIII	ACRYGT	2 cut(s)	978, 1260
AgsI	TTSAA	7 cut(s)	634, 860, 959, 1057, 1226, 1286, 1315
AjnI	CCWGG	4 cut(s)	23, 903, 1070, 1320
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AloI	GAACNNNNNNTCC	2 cut(s)	614, 646
AluBI	AGCT	6 cut(s)	310, 625, 678, 685, 746, 937
AluI	AGCT	6 cut(s)	310, 625, 678, 685, 746, 937
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	3 cut(s)	66, 653, 987
AlwI	GGATC	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	74, 437
ApoI	RAATTY	3 cut(s)	822, 951, 1194
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	1115
Asp718I	GGTACC	1 cut(s)	168
AspA2I	CCTAGG	1 cut(s)	164
AsuC2I	CCSGG	3 cut(s)	326, 327, 605
AsuHPI	GGTGA	3 cut(s)	499, 602, 781
AvaI	CYCGRG	1 cut(s)	325
AvrII	CCTAGG	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	777
BanI	GGYRCC	2 cut(s)	168, 1289
BanII	GRGCYC	2 cut(s)	627, 643
BarI	GAAGNNNNNNTAC	2 cut(s)	800, 832
Bbv12I	GWGCWC	1 cut(s)	627
BbvCI	CCTCAGC	2 cut(s)	558, 747
BbvI	GCAGC	2 cut(s)	61, 424
BccI	CCATC	6 cut(s)	251, 344, 355, 385, 646, 749
BceAI	ACGGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	1142, 1176
BciT130I	CCWGG	4 cut(s)	25, 905, 1072, 1322
BciVI	GTATCC	1 cut(s)	611
BclI	TGATCA	1 cut(s)	1048
BcnI	CCSGG	3 cut(s)	326, 327, 605
BcoDI	GTCTC	3 cut(s)	66, 653, 987
BfaI	CTAG	4 cut(s)	51, 165, 1020, 1178
BfuI	GTATCC	1 cut(s)	611
BisI	GCNGC	3 cut(s)	72, 75, 438
BlnI	CCTAGG	1 cut(s)	164
BlsI	GCNGC	3 cut(s)	73, 76, 439
Bme1390I	CCNGG	7 cut(s)	25, 326, 327, 605, 905, 1072, 1322
BmeT110I	CYCGRG	1 cut(s)	325
BmiI	GGNNCC	3 cut(s)	170, 909, 1291
BmrFI	CCNGG	7 cut(s)	25, 326, 327, 605, 905, 1072, 1322
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	4 cut(s)	345, 405, 1144, 1174
BmuI	ACTGGG	1 cut(s)	105
Bpu10I	CCTNAGC	4 cut(s)	558, 617, 626, 747
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	3 cut(s)	326, 327, 605
Bsa29I	ATCGAT	1 cut(s)	1152
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	7 cut(s)	93, 164, 325, 604, 903, 1164, 1321
BsaXI	ACNNNNNCTCC	6 cut(s)	614, 644, 650, 680, 723, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	782, 923
Bse1I	ACTGG	1 cut(s)	111
Bse21I	CCTNAGG	1 cut(s)	777
BseBI	CCWGG	4 cut(s)	25, 905, 1072, 1322
BseCI	ATCGAT	1 cut(s)	1152
BseDI	CCNNGG	7 cut(s)	93, 164, 325, 604, 903, 1164, 1321
BseGI	GGATG	5 cut(s)	360, 511, 760, 1111, 1128
BseLI	CCNNNNNNNGG	2 cut(s)	782, 923
BseMII	CTCAG	8 cut(s)	77, 549, 640, 654, 738, 756, 936, 1179
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	7 cut(s)	254, 257, 260, 401, 671, 737, 764
BseXI	GCAGC	2 cut(s)	61, 424
BsgI	GTGCAG	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	645
BshNI	GGYRCC	2 cut(s)	168, 1289
BshVI	ATCGAT	1 cut(s)	1152
BsiHKAI	GWGCWC	1 cut(s)	627
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	326, 604
BslFI	GGGAC	3 cut(s)	265, 885, 1049
BslI	CCNNNNNNNGG	2 cut(s)	782, 923
BsmAI	GTCTC	3 cut(s)	66, 653, 987
BsmFI	GGGAC	3 cut(s)	265, 885, 1049
BsmI	GAATGC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	627, 643
Bsp1407I	TGTACA	1 cut(s)	1263
Bsp143I	GATC	3 cut(s)	835, 844, 1048
Bsp19I	CCATGG	1 cut(s)	93
Bsp68I	TCGCGA	1 cut(s)	645
BspACI	CCGC	2 cut(s)	72, 402
BspCNI	CTCAG	8 cut(s)	76, 550, 639, 655, 739, 757, 937, 1180
BspDI	ATCGAT	1 cut(s)	1152
BspFNI	CGCG	1 cut(s)	645
BspLI	GGNNCC	3 cut(s)	170, 909, 1291
BspPI	GGATC	1 cut(s)	839
BspQI	GCTCTTC	1 cut(s)	1310
BspT107I	GGYRCC	2 cut(s)	168, 1289
BspTNI	GGTCTC	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	1263
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	7 cut(s)	93, 164, 325, 604, 903, 1164, 1321
BssMI	GATC	3 cut(s)	835, 844, 1048
BssT1I	CCWWGG	3 cut(s)	93, 164, 1164
Bst2UI	CCWGG	4 cut(s)	25, 905, 1072, 1322
Bst4CI	ACNGT	2 cut(s)	346, 478
Bst6I	CTCTTC	2 cut(s)	795, 1310
BstAUI	TGTACA	1 cut(s)	1263
BstC8I	GCNNGC	5 cut(s)	555, 643, 744, 935, 1276
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	5 cut(s)	360, 511, 760, 1111, 1128
BstFNI	CGCG	1 cut(s)	645
BstKTI	GATC	3 cut(s)	838, 847, 1051
BstMAI	GTCTC	3 cut(s)	66, 653, 987
BstMBI	GATC	3 cut(s)	835, 844, 1048
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 622, 1275, 1298
BstNI	CCWGG	4 cut(s)	25, 905, 1072, 1322
BstNSI	RCATGY	3 cut(s)	557, 982, 1264
BstSCI	CCNGG	7 cut(s)	23, 324, 325, 603, 903, 1070, 1320
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	61, 424
BstXI	CCANNNNNNTGG	1 cut(s)	1252
Bsu15I	ATCGAT	1 cut(s)	1152
Bsu36I	CCTNAGG	1 cut(s)	777
BsuI	GTATCC	1 cut(s)	611
BsuTUI	ATCGAT	1 cut(s)	1152
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	5 cut(s)	360, 511, 760, 1111, 1128
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	3 cut(s)	39, 45, 483
BtuMI	TCGCGA	1 cut(s)	645
Cac8I	GCNNGC	5 cut(s)	555, 643, 744, 935, 1276
Cfr9I	CCCGGG	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	1152
CsiI	ACCWGGT	1 cut(s)	1070
Csp6I	GTAC	4 cut(s)	13, 169, 817, 1264
CviAII	CATG	9 cut(s)	94, 137, 181, 511, 554, 878, 979, 1144, 1261
CviQI	GTAC	4 cut(s)	13, 169, 817, 1264
DpnI	GATC	3 cut(s)	837, 846, 1050
DpnII	GATC	3 cut(s)	835, 844, 1048
DraI	TTTAAA	1 cut(s)	1200
Eam1104I	CTCTTC	2 cut(s)	795, 1310
EarI	CTCTTC	2 cut(s)	795, 1310
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	3 cut(s)	93, 164, 1164
Eco24I	GRGCYC	2 cut(s)	627, 643
Eco31I	GGTCTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	1234
Eco53kI	GAGCTC	1 cut(s)	625
Eco81I	CCTNAGG	1 cut(s)	777
Eco88I	CYCGRG	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	625
EcoRI	GAATTC	1 cut(s)	951
EcoRII	CCWGG	4 cut(s)	23, 903, 1070, 1320
EcoRV	GATATC	1 cut(s)	1234
EcoT14I	CCWWGG	3 cut(s)	93, 164, 1164
EcoT38I	GRGCYC	2 cut(s)	627, 643
ErhI	CCWWGG	3 cut(s)	93, 164, 1164
FaeI	CATG	9 cut(s)	97, 140, 184, 514, 557, 881, 982, 1147, 1264
FaqI	GGGAC	3 cut(s)	265, 885, 1049
FatI	CATG	9 cut(s)	93, 136, 180, 510, 553, 877, 978, 1143, 1260
FauI	CCCGC	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	1048
Fnu4HI	GCNGC	3 cut(s)	72, 75, 438
FokI	GGATG	5 cut(s)	367, 518, 767, 1115, 1118
FriOI	GRGCYC	2 cut(s)	627, 643
Fsp4HI	GCNGC	3 cut(s)	72, 75, 438
FspBI	CTAG	4 cut(s)	51, 165, 1020, 1178
GluI	GCNGC	3 cut(s)	72, 75, 438
HapII	CCGG	2 cut(s)	326, 604
Hin1II	CATG	9 cut(s)	97, 140, 184, 514, 557, 881, 982, 1147, 1264
HinfI	GANTC	5 cut(s)	224, 233, 285, 772, 873
HpaII	CCGG	2 cut(s)	326, 604
HphI	GGTGA	3 cut(s)	499, 602, 781
Hpy166II	GTNNAC	1 cut(s)	1258
Hpy188I	TCNGA	4 cut(s)	238, 844, 849, 1331
Hpy188III	TCNNGA	5 cut(s)	282, 644, 833, 1120, 1283
Hpy8I	GTNNAC	1 cut(s)	1258
Hpy99I	CGWCG	1 cut(s)	448
HpyAV	CCTTC	5 cut(s)	511, 523, 535, 722, 1280
HpyCH4III	ACNGT	2 cut(s)	346, 478
HpyCH4V	TGCA	4 cut(s)	128, 373, 553, 933
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 622, 1275, 1298
Hsp92II	CATG	9 cut(s)	97, 140, 184, 514, 557, 881, 982, 1147, 1264
KpnI	GGTACC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	1048
Kzo9I	GATC	3 cut(s)	835, 844, 1048
LguI	GCTCTTC	1 cut(s)	1310
LmnI	GCTCC	5 cut(s)	394, 445, 622, 682, 1017
Lsp1109I	GCAGC	2 cut(s)	61, 424
LweI	GCATC	4 cut(s)	345, 405, 1144, 1174
MabI	ACCWGGT	1 cut(s)	1070
MaeI	CTAG	4 cut(s)	51, 165, 1020, 1178
MaeIII	GTNAC	3 cut(s)	760, 940, 1133
MalI	GATC	3 cut(s)	837, 846, 1050
MboI	GATC	3 cut(s)	835, 844, 1048
MfeI	CAATTG	1 cut(s)	1052
MhlI	GDGCHC	2 cut(s)	627, 643
MluCI	AATT	5 cut(s)	822, 951, 1039, 1052, 1194
MmeI	TCCRAC	1 cut(s)	1039
MroXI	GAANNNNTTC	1 cut(s)	1115
MseI	TTAA	4 cut(s)	267, 1083, 1199, 1305
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	2 cut(s)	74, 746
MspI	CCGG	2 cut(s)	326, 604
MspR9I	CCNGG	7 cut(s)	25, 326, 327, 605, 905, 1072, 1322
MunI	CAATTG	1 cut(s)	1052
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	4 cut(s)	25, 905, 1072, 1322
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	4 cut(s)	95, 622, 1275, 1298
NciI	CCSGG	3 cut(s)	326, 327, 605
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	3 cut(s)	835, 844, 1048
NlaIII	CATG	9 cut(s)	97, 140, 184, 514, 557, 881, 982, 1147, 1264
NlaIV	GGNNCC	3 cut(s)	170, 909, 1291
NmuCI	GTSAC	1 cut(s)	1133
NruI	TCGCGA	1 cut(s)	645
NspI	RCATGY	3 cut(s)	557, 982, 1264
PaeI	GCATGC	1 cut(s)	557
PciI	ACATGT	2 cut(s)	978, 1260
PciSI	GCTCTTC	1 cut(s)	1310
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	1115
PfeI	GAWTC	5 cut(s)	224, 233, 285, 772, 873
PflMI	CCANNNNNTGG	1 cut(s)	923
PkrI	GCNGC	3 cut(s)	73, 76, 439
PscI	ACATGT	2 cut(s)	978, 1260
PshBI	ATTAAT	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	4 cut(s)	23, 903, 1070, 1320
PspGI	CCWGG	4 cut(s)	23, 903, 1070, 1320
PspN4I	GGNNCC	3 cut(s)	170, 909, 1291
PvuII	CAGCTG	1 cut(s)	746
RruI	TCGCGA	1 cut(s)	645
RsaI	GTAC	4 cut(s)	14, 170, 818, 1265
RsaNI	GTAC	4 cut(s)	13, 169, 817, 1264
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	627
SapI	GCTCTTC	1 cut(s)	1310
SaqAI	TTAA	4 cut(s)	267, 1083, 1199, 1305
SatI	GCNGC	3 cut(s)	72, 75, 438
Sau3AI	GATC	3 cut(s)	835, 844, 1048
ScrFI	CCNGG	7 cut(s)	25, 326, 327, 605, 905, 1072, 1322
SduI	GDGCHC	2 cut(s)	627, 643
SexAI	ACCWGGT	1 cut(s)	1070
SfaNI	GCATC	4 cut(s)	345, 405, 1144, 1174
SmaI	CCCGGG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	5 cut(s)	822, 951, 1039, 1052, 1194
SsiI	CCGC	2 cut(s)	72, 402
SspMI	CTAG	4 cut(s)	51, 165, 1020, 1178
SstI	GAGCTC	1 cut(s)	627
StyD4I	CCNGG	7 cut(s)	23, 324, 325, 603, 903, 1070, 1320
StyI	CCWWGG	3 cut(s)	93, 164, 1164
TaaI	ACNGT	2 cut(s)	346, 478
TaqI	TCGA	1 cut(s)	1152
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	5 cut(s)	822, 951, 1039, 1052, 1194
TatI	WGTACW	1 cut(s)	1263
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	5 cut(s)	224, 233, 285, 772, 873
Tru1I	TTAA	4 cut(s)	267, 1083, 1199, 1305
Tru9I	TTAA	4 cut(s)	267, 1083, 1199, 1305
TscAI	CASTG	3 cut(s)	39, 52, 483
TseFI	GTSAC	1 cut(s)	1133
TseI	GCWGC	2 cut(s)	74, 437
Tsp45I	GTSAC	1 cut(s)	1133
TspDTI	ATGAA	4 cut(s)	105, 554, 1223, 1227
TspGWI	ACGGA	2 cut(s)	432, 1121
TspMI	CCCGGG	1 cut(s)	325
TspRI	CASTG	3 cut(s)	39, 52, 483
Van91I	CCANNNNNTGG	1 cut(s)	923
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	3 cut(s)	822, 951, 1194
XceI	RCATGY	3 cut(s)	557, 982, 1264
XmaI	CCCGGG	1 cut(s)	325
XmaJI	CCTAGG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	1115
XspI	CTAG	4 cut(s)	51, 165, 1020, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.