Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011367

Physical Location & Seq

Genomic Coordinates Reverse (-)

12371773 .. 12373967

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGGCAGCTCTAAACCACTCAAGAACCCTAATTTCCCAAAACCCATTTCCCCATTTCACCGGTACATTCACTCTGCTCAAGCTCAAGCACAAGCTGTTGATTCCGAGGATTCCGAGCAGGAGGAAGACGGAGCCGTTGGCGATTTCCTGTCCCGGTTCGTGTGGATCGATTCGACAGAAGCTCTCCGAATCGTACCCGGGATCCGATAAGGCAACCGTCGACGGCATGCTGTTGATTATTGTGGAGAGAGTTGTGGCGGAGATGGAGAAGGGCGGCATTGAGCAGATGCTCGGTTCTTCGCAGTACACCGATGATTTTAGTGAGGATTTGTGGAGGACGGTGTGGGAGGTGAGCAATATGGTGTTGGAGGACATGAGGAGGGAGGCGAAAAAGGAGAAAATGAAGGGTTTTTTACAGGAAGAGGAGGTGAAGGAGATGTGCAGATTTGCCGGTGAAGTCGGAATTCGAGGGGATATGCTTAGGGAGCTGAGGTTCAAGTGGGCGCAAGAGAAGATGGAGGAAACTGAGTTTTATCAGAGCTTGGAGCGGCTTCGAGAGGGGGACAAGAAGGCGGAGGAAGCAGGGGAGGAGGCAGAGGGAATGCAAGGTGAAGCCACAGGGGAAGAGGTGAAGTCTAAGGTTGTTTTACTTCCGAAGAGGCGAGGGAAGATCAAGTACAATATATATGGTCTTGATCTGTCTGACCCCAAGTGGGTAGATGTGGCTGATAGAATCCATGAGGCTGAAGAGATCACTTGGCCTCAGGAACCGAAATCCATATCCGGGAAATGCAAGTTGGTAACTGAGAAAATTATTCAAACGAATGTGGCGGATGACCAGTCTCCGCATTTGGCTGAATGGATAGAGCTGCTTCAACCTAGTAGGGTTGATTGGCTCAATTTGCTCGATAGATTGAAAGAGCAGAACACTGCCTTGTACTTCAAGGTCGCAGAACTTGTACTGGATGAGAAATCCTTCCAGACAAACATTCGTGACTATTCAATTCTTATCGATGCCCATGCAAAAGAGAACCATCTAGAAGATGCTGAGAGAATTTTGAAGAAGATGAATGAAAATGGTATCGTGCCTGATATTTTAACTACCACTAGTTTGGTTCACATGTACAGCAAGGTAGGCAATCTTGACGGTGCCAAACAAGCATTTGAAAGCCTAAGGAGCCAGGGCTTCAAACCAGATGTCAAGGTCTACAATCTGATGATCATGGCATATGTAAATGCTGGCCAACCGAAATTTGGAGAGTCATTGATGAGAGAGATGGAAGCAAGAGACATCAAACCCACAAAAGAAATCTTCATGACATTGCTTCGGTCATTTGCACAACAGGGTGATATTGGTGGAGCGGGACGAATTGCCAATATTATGCAGTTTGCAGGGTTCCAGCCGACATTGGAGTCTTGTACACTGCTTGTAGATGCATATGGGAAAGCTGGCGACCCTGATCAGGCAAGGAGCAACTTCGATTACATGATGAAAGTTGGGCACAGGCCTGATGACAGATGCACTGCAAGCATGCTTGCAGCTTATGAAAAAAGGAATTTACTGGATAAAGCGCTGAATCTGTTAACACAGCTTGAAAAGGATGGATTTGAGCCTGGAGTTGCCACTTACTCTGTTCTTATAGATTGGTTGGGTAAATTGCAGCTAGTTGGTGAGGCTGAACAACTATTGGGAAAGATTGCCGAGCAGGGTGAGGCTCCTCCACTAAAAGTTCATATAGGCCTTTTTGATATGTACGCTAAGGCTGGAGTCGAGAAAAAGGCACTCCAAGCCTTGGGAGTATTGGAGGCTAAGAAGGATCAATTGGGTTCAGAGGAGTTTGAGACGATCATAAATGGGCTTATAGCTGGTGGGTTTGTGCAGGATGCTCATAGGGTACGTGGTCTGATGGAGGCCCAGGGCTTTGCTCCGTCAGAGCCACTTAAGATGGCCCTAATGGCATCTCAAGCTTTTGGGCGCAAAAGGCCCTCAATGAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

667

Amino Acids

75.02

Weight (kDa)

5.73

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	320 - 415	5.4e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	322 - 367	6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	333 - 377	1.8e-08	PPR repeat family
PPR_long	PF17177	340 - 450	1.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	360 - 412	3.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	363 - 407	6.4e-06	PPR repeat family
PPR_2	PF13041	510 - 551	5.9e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19520 AT1G19520
fragaria_vesca	FvH4_6g24430
malus_domestica	MD03G1139500.v1.1 MD11G1162300.v1.1
prunus_persica	Prupe.6G124500_v2.0.a1
pyrus_communis	pycom03g09450 pycom11g13170
rosa_chinensis	RchiOBHm_Chr7g0207751
rosa_laevigata	RLG00000003290
rosa_multiflora	Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012
rosa_roxburghii	Rroxscaffold_3G00251180
rosa_rugosa	Rorug07G0099500 Rorug07G0099600
rosa_samantha	Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800
rosa_wichuraiana	Rw7G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1411
AccB1I	GGYRCC	1 cut(s)	1148
AccB7I	CCANNNNNTGG	1 cut(s)	1792
AccBSI	CCGCTC	2 cut(s)	547, 1361
AccI	GTMKAC	2 cut(s)	219, 1206
AciI	CCGC	7 cut(s)	257, 273, 547, 572, 830, 845, 1361
AclWI	GGATC	4 cut(s)	172, 195, 208, 1824
AcoI	YGGCCR	1 cut(s)	1240
AcsI	RAATTY	4 cut(s)	462, 1053, 1250, 1555
AcuI	CTGAAG	1 cut(s)	765
AfeI	AGCGCT	1 cut(s)	1572
AfiI	CCNNNNNNNGG	5 cut(s)	712, 783, 1253, 1462, 1792
AflII	CTTAAG	1 cut(s)	1940
AflIII	ACRYGT	1 cut(s)	1119
AgeI	ACCGGT	1 cut(s)	59
AhlI	ACTAGT	1 cut(s)	1106
AjnI	CCWGG	3 cut(s)	1179, 1612, 1914
AjuI	GAANNNNNNNTTGG	6 cut(s)	30, 62, 779, 811, 1805, 1837
AloI	GAACNNNNNNTCC	2 cut(s)	476, 508
Alw26I	GTCTC	3 cut(s)	846, 1281, 1835
AlwI	GGATC	4 cut(s)	172, 195, 208, 1824
Ama87I	CYCGRG	1 cut(s)	196
Aor51HI	AGCGCT	1 cut(s)	1572
AoxI	GGCC	7 cut(s)	758, 1240, 1505, 1738, 1911, 1947, 1982
ApeKI	GCWGC	4 cut(s)	5, 868, 1538, 1660
ApoI	RAATTY	4 cut(s)	462, 1053, 1250, 1555
ArsI	GACNNNNNNTTYG	2 cut(s)	1182, 1214
AsiGI	ACCGGT	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	974
AspLEI	GCGC	3 cut(s)	505, 1573, 1977
AspS9I	GGNCC	3 cut(s)	1912, 1948, 1983
AsuC2I	CCSGG	4 cut(s)	153, 197, 198, 784
AsuHPI	GGTGA	9 cut(s)	49, 361, 439, 464, 620, 640, 1358, 1682, 1721
AvaI	CYCGRG	1 cut(s)	196
AxyI	CCTNAGG	2 cut(s)	762, 1172
BaeGI	GKGCMC	1 cut(s)	1503
BalI	TGGCCA	1 cut(s)	1242
BamHI	GGATCC	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	1148
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
BbsI	GAAGAC	1 cut(s)	131
BbvCI	CCTCAGC	1 cut(s)	488
BbvI	GCAGC	4 cut(s)	17, 855, 1550, 1672
BccI	CCATC	7 cut(s)	256, 508, 1041, 1270, 1595, 1900, 1939
BceAI	ACGGC	2 cut(s)	118, 238
BcgI	CGANNNNNNTGC	2 cut(s)	1001, 1035
BciT130I	CCWGG	3 cut(s)	1181, 1614, 1916
BclI	TGATCA	2 cut(s)	1218, 1459
BcnI	CCSGG	4 cut(s)	153, 197, 198, 784
BcoDI	GTCTC	3 cut(s)	846, 1281, 1835
BcuI	ACTAGT	1 cut(s)	1106
BfaI	CTAG	4 cut(s)	879, 1037, 1107, 1664
BfoI	RGCGCY	1 cut(s)	1574
BfrI	CTTAAG	1 cut(s)	1940
BglI	GCCNNNNNGGC	1 cut(s)	1955
BisI	GCNGC	6 cut(s)	6, 274, 548, 869, 1539, 1661
BlsI	GCNGC	6 cut(s)	7, 275, 549, 870, 1540, 1662
Bme1390I	CCNGG	7 cut(s)	153, 197, 198, 784, 1181, 1614, 1916
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	3 cut(s)	1912, 1948, 1983
BmiI	GGNNCC	7 cut(s)	132, 202, 768, 1150, 1178, 1397, 1716
BmrFI	CCNGG	7 cut(s)	153, 197, 198, 784, 1181, 1614, 1916
BmsI	GCATC	7 cut(s)	276, 1003, 1033, 1423, 1508, 1873, 1967
BpiI	GAAGAC	1 cut(s)	131
BpmI	CTGGAG	2 cut(s)	1635, 1785
Bpu10I	CCTNAGC	3 cut(s)	479, 488, 1758
BpuEI	CTTGAG	4 cut(s)	4, 62, 68, 1947
BpuMI	CCSGG	4 cut(s)	153, 197, 198, 784
Bsa29I	ATCGAT	2 cut(s)	167, 1011
BsaAI	YACGTR	1 cut(s)	1898
BsaJI	CCNNGG	6 cut(s)	104, 196, 1180, 1791, 1914, 1915
BsaWI	WCCGGW	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	5 cut(s)	712, 783, 1253, 1462, 1792
Bse118I	RCCGGY	2 cut(s)	59, 449
Bse1I	ACTGG	3 cut(s)	838, 966, 1566
Bse21I	CCTNAGG	2 cut(s)	762, 1172
Bse3DI	GCAATG	1 cut(s)	1319
BseBI	CCWGG	3 cut(s)	1181, 1614, 1916
BseCI	ATCGAT	2 cut(s)	167, 1011
BseDI	CCNNGG	6 cut(s)	104, 196, 1180, 1791, 1914, 1915
BseGI	GGATG	4 cut(s)	838, 970, 1606, 1888
BseLI	CCNNNNNNNGG	5 cut(s)	712, 783, 1253, 1462, 1792
BseMI	GCAATG	1 cut(s)	1319
BseMII	CTCAG	5 cut(s)	479, 516, 776, 795, 1038
BseNI	ACTGG	3 cut(s)	838, 966, 1566
BseRI	GAGGAG	5 cut(s)	391, 437, 602, 1707, 1847
BseSI	GKGCMC	1 cut(s)	1503
BseXI	GCAGC	4 cut(s)	17, 855, 1550, 1672
BsgI	GTGCAG	2 cut(s)	460, 1898
BshFI	GGCC	7 cut(s)	760, 1242, 1507, 1740, 1913, 1949, 1984
BshNI	GGYRCC	1 cut(s)	1148
BshTI	ACCGGT	1 cut(s)	59
BshVI	ATCGAT	2 cut(s)	167, 1011
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	5 cut(s)	60, 153, 197, 450, 783
BslFI	GGGAC	3 cut(s)	135, 575, 1377
BslI	CCNNNNNNNGG	5 cut(s)	712, 783, 1253, 1462, 1792
BsmAI	GTCTC	3 cut(s)	846, 1281, 1835
BsmBI	CGTCTC	1 cut(s)	1835
BsmFI	GGGAC	3 cut(s)	135, 575, 1377
BsmI	GAATGC	1 cut(s)	606
BsnI	GGCC	7 cut(s)	760, 1242, 1507, 1740, 1913, 1949, 1984
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	1503
Bsp1407I	TGTACA	2 cut(s)	1122, 1418
Bsp143I	GATC	9 cut(s)	164, 200, 669, 694, 750, 1218, 1459, 1816, 1845
BspACI	CCGC	7 cut(s)	257, 273, 547, 572, 830, 845, 1361
BspANI	GGCC	7 cut(s)	760, 1242, 1507, 1740, 1913, 1949, 1984
BspCNI	CTCAG	5 cut(s)	480, 517, 775, 796, 1039
BspDI	ATCGAT	2 cut(s)	167, 1011
BspHI	TCATGA	1 cut(s)	1314
BspLI	GGNNCC	7 cut(s)	132, 202, 768, 1150, 1178, 1397, 1716
BspPI	GGATC	4 cut(s)	172, 195, 208, 1824
BspT107I	GGYRCC	1 cut(s)	1148
BspTI	CTTAAG	1 cut(s)	1940
BsrBI	CCGCTC	2 cut(s)	547, 1361
BsrDI	GCAATG	1 cut(s)	1319
BsrFI	RCCGGY	2 cut(s)	59, 449
BsrGI	TGTACA	2 cut(s)	1122, 1418
BsrI	ACTGG	3 cut(s)	838, 966, 1566
BssAI	RCCGGY	2 cut(s)	59, 449
BssECI	CCNNGG	6 cut(s)	104, 196, 1180, 1791, 1914, 1915
BssMI	GATC	9 cut(s)	164, 200, 669, 694, 750, 1218, 1459, 1816, 1845
BssT1I	CCWWGG	1 cut(s)	1791
Bst2UI	CCWGG	3 cut(s)	1181, 1614, 1916
Bst4CI	ACNGT	3 cut(s)	217, 340, 1148
Bst6I	CTCTTC	4 cut(s)	414, 618, 650, 741
BstAFI	CTTAAG	1 cut(s)	1940
BstAUI	TGTACA	2 cut(s)	1122, 1418
BstBAI	YACGTR	1 cut(s)	1898
BstC8I	GCNNGC	6 cut(s)	227, 1240, 1450, 1528, 1532, 1536
BstF5I	GGATG	4 cut(s)	838, 970, 1606, 1888
BstH2I	RGCGCY	1 cut(s)	1574
BstHHI	GCGC	3 cut(s)	505, 1573, 1977
BstKTI	GATC	9 cut(s)	167, 203, 672, 697, 753, 1221, 1462, 1819, 1848
BstMAI	GTCTC	3 cut(s)	846, 1281, 1835
BstMBI	GATC	9 cut(s)	164, 200, 669, 694, 750, 1218, 1459, 1816, 1845
BstNI	CCWGG	3 cut(s)	1181, 1614, 1916
BstNSI	RCATGY	3 cut(s)	229, 1123, 1534
BstSCI	CCNGG	7 cut(s)	151, 195, 196, 782, 1179, 1612, 1914
BstSLI	GKGCMC	1 cut(s)	1503
BstV1I	GCAGC	4 cut(s)	17, 855, 1550, 1672
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	200
BstXI	CCANNNNNNTGG	1 cut(s)	1111
BstYI	RGATCY	1 cut(s)	200
Bsu15I	ATCGAT	2 cut(s)	167, 1011
Bsu36I	CCTNAGG	2 cut(s)	762, 1172
BsuRI	GGCC	7 cut(s)	760, 1242, 1507, 1740, 1913, 1949, 1984
BsuTUI	ATCGAT	2 cut(s)	167, 1011
BtsCI	GGATG	4 cut(s)	838, 970, 1606, 1888
BtsI	GCAGTG	3 cut(s)	927, 1421, 1521
BtsIMutI	CAGTG	3 cut(s)	927, 1421, 1521
Cac8I	GCNNGC	6 cut(s)	227, 1240, 1450, 1528, 1532, 1536
CciI	TCATGA	1 cut(s)	1314
CfoI	GCGC	3 cut(s)	505, 1573, 1977
Cfr10I	RCCGGY	2 cut(s)	59, 449
Cfr13I	GGNCC	3 cut(s)	1912, 1948, 1983
Cfr9I	CCCGGG	1 cut(s)	196
ClaI	ATCGAT	2 cut(s)	167, 1011
CspAI	ACCGGT	1 cut(s)	59
CviAII	CATG	9 cut(s)	226, 373, 737, 1019, 1120, 1222, 1315, 1486, 1531
DpnI	GATC	9 cut(s)	166, 202, 671, 696, 752, 1220, 1461, 1818, 1847
DpnII	GATC	9 cut(s)	164, 200, 669, 694, 750, 1218, 1459, 1816, 1845
DrdI	GACNNNNNNGTC	1 cut(s)	1411
DseDI	GACNNNNNNGTC	1 cut(s)	1411
EaeI	YGGCCR	1 cut(s)	1240
Eam1104I	CTCTTC	4 cut(s)	414, 618, 650, 741
EarI	CTCTTC	4 cut(s)	414, 618, 650, 741
EciI	GGCGGA	3 cut(s)	272, 587, 845
Eco130I	CCWWGG	1 cut(s)	1791
Eco147I	AGGCCT	2 cut(s)	1507, 1740
Eco47III	AGCGCT	1 cut(s)	1572
Eco57I	CTGAAG	1 cut(s)	765
Eco81I	CCTNAGG	2 cut(s)	762, 1172
Eco88I	CYCGRG	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	1983
EcoRI	GAATTC	1 cut(s)	462
EcoRII	CCWGG	3 cut(s)	1179, 1612, 1914
EcoT14I	CCWWGG	1 cut(s)	1791
EcoT22I	ATGCAT	1 cut(s)	1438
ErhI	CCWWGG	1 cut(s)	1791
Esp3I	CGTCTC	1 cut(s)	1835
FaeI	CATG	9 cut(s)	229, 376, 740, 1022, 1123, 1225, 1318, 1489, 1534
FaqI	GGGAC	3 cut(s)	135, 575, 1377
FatI	CATG	9 cut(s)	225, 372, 736, 1018, 1119, 1221, 1314, 1485, 1530
FauI	CCCGC	1 cut(s)	1354
FauNDI	CATATG	2 cut(s)	1228, 1438
FbaI	TGATCA	2 cut(s)	1218, 1459
FblI	GTMKAC	2 cut(s)	219, 1206
Fnu4HI	GCNGC	6 cut(s)	6, 274, 548, 869, 1539, 1661
FokI	GGATG	4 cut(s)	845, 977, 1613, 1895
Fsp4HI	GCNGC	6 cut(s)	6, 274, 548, 869, 1539, 1661
FspBI	CTAG	4 cut(s)	879, 1037, 1107, 1664
GlaI	GCGC	3 cut(s)	504, 1572, 1976
GluI	GCNGC	6 cut(s)	6, 274, 548, 869, 1539, 1661
GsuI	CTGGAG	2 cut(s)	1635, 1785
HaeII	RGCGCY	1 cut(s)	1574
HaeIII	GGCC	7 cut(s)	760, 1242, 1507, 1740, 1913, 1949, 1984
HapII	CCGG	5 cut(s)	60, 153, 197, 450, 783
HhaI	GCGC	3 cut(s)	505, 1573, 1977
Hin1II	CATG	9 cut(s)	229, 376, 740, 1022, 1123, 1225, 1318, 1489, 1534
Hin6I	GCGC	3 cut(s)	503, 1571, 1975
HinP1I	GCGC	3 cut(s)	503, 1571, 1975
HincII	GTYRAC	2 cut(s)	220, 1584
HindII	GTYRAC	2 cut(s)	220, 1584
HindIII	AAGCTT	1 cut(s)	1965
HinfI	GANTC	9 cut(s)	100, 109, 169, 188, 732, 1259, 1412, 1576, 1767
HpaI	GTTAAC	1 cut(s)	1584
HpaII	CCGG	5 cut(s)	60, 153, 197, 450, 783
HphI	GGTGA	9 cut(s)	49, 361, 439, 464, 620, 640, 1358, 1682, 1721
Hpy166II	GTNNAC	6 cut(s)	220, 306, 1117, 1207, 1421, 1584
Hpy8I	GTNNAC	6 cut(s)	220, 306, 1117, 1207, 1421, 1584
Hpy99I	CGWCG	2 cut(s)	221, 224
HpyAV	CCTTC	6 cut(s)	262, 397, 424, 562, 985, 1807
HpyCH4III	ACNGT	3 cut(s)	217, 340, 1148
HpyCH4IV	ACGT	1 cut(s)	1897
HpySE526I	ACGT	1 cut(s)	1897
Hsp92II	CATG	9 cut(s)	229, 376, 740, 1022, 1123, 1225, 1318, 1489, 1534
HspAI	GCGC	3 cut(s)	503, 1571, 1975
Ksp22I	TGATCA	2 cut(s)	1218, 1459
KspAI	GTTAAC	1 cut(s)	1584
Kzo9I	GATC	9 cut(s)	164, 200, 669, 694, 750, 1218, 1459, 1816, 1845
LmnI	GCTCC	8 cut(s)	130, 484, 544, 1176, 1358, 1470, 1720, 1930
Lsp1109I	GCAGC	4 cut(s)	17, 855, 1550, 1672
LweI	GCATC	7 cut(s)	276, 1003, 1033, 1423, 1508, 1873, 1967
MaeI	CTAG	4 cut(s)	879, 1037, 1107, 1664
MaeII	ACGT	1 cut(s)	1897
MaeIII	GTNAC	2 cut(s)	799, 992
MalI	GATC	9 cut(s)	166, 202, 671, 696, 752, 1220, 1461, 1818, 1847
MbiI	CCGCTC	2 cut(s)	547, 1361
MboI	GATC	9 cut(s)	164, 200, 669, 694, 750, 1218, 1459, 1816, 1845
MfeI	CAATTG	1 cut(s)	1820
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	1503
MlsI	TGGCCA	1 cut(s)	1242
MluNI	TGGCCA	1 cut(s)	1242
MlyI	GAGTC	3 cut(s)	1268, 1421, 1776
MmeI	TCCRAC	2 cut(s)	345, 439
Mox20I	TGGCCA	1 cut(s)	1242
Mph1103I	ATGCAT	1 cut(s)	1438
MroXI	GAANNNNTTC	1 cut(s)	974
MscI	TGGCCA	1 cut(s)	1242
MseI	TTAA	3 cut(s)	1097, 1583, 1941
Msp20I	TGGCCA	1 cut(s)	1242
MspCI	CTTAAG	1 cut(s)	1940
MspI	CCGG	5 cut(s)	60, 153, 197, 450, 783
MspR9I	CCNGG	7 cut(s)	153, 197, 198, 784, 1181, 1614, 1916
MunI	CAATTG	1 cut(s)	1820
Mva1269I	GAATGC	1 cut(s)	606
MvaI	CCWGG	3 cut(s)	1181, 1614, 1916
NciI	CCSGG	4 cut(s)	153, 197, 198, 784
NdeI	CATATG	2 cut(s)	1228, 1438
NdeII	GATC	9 cut(s)	164, 200, 669, 694, 750, 1218, 1459, 1816, 1845
NlaIII	CATG	9 cut(s)	229, 376, 740, 1022, 1123, 1225, 1318, 1489, 1534
NlaIV	GGNNCC	7 cut(s)	132, 202, 768, 1150, 1178, 1397, 1716
NmeAIII	GCCGAG	1 cut(s)	1726
NmuCI	GTSAC	1 cut(s)	992
NsiI	ATGCAT	1 cut(s)	1438
NspI	RCATGY	3 cut(s)	229, 1123, 1534
PaeI	GCATGC	2 cut(s)	229, 1534
PagI	TCATGA	1 cut(s)	1314
PasI	CCCWGGG	1 cut(s)	1915
PceI	AGGCCT	2 cut(s)	1507, 1740
PciI	ACATGT	1 cut(s)	1119
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PctI	GAATGC	1 cut(s)	606
PdmI	GAANNNNTTC	1 cut(s)	974
PfeI	GAWTC	6 cut(s)	100, 109, 169, 188, 732, 1576
PflMI	CCANNNNNTGG	1 cut(s)	1792
PfoI	TCCNGGA	1 cut(s)	782
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	6 cut(s)	7, 275, 549, 870, 1540, 1662
PleI	GAGTC	3 cut(s)	1267, 1420, 1775
PpsI	GAGTC	3 cut(s)	1267, 1420, 1775
Ppu21I	YACGTR	1 cut(s)	1898
PscI	ACATGT	1 cut(s)	1119
Psp6I	CCWGG	3 cut(s)	1179, 1612, 1914
PspGI	CCWGG	3 cut(s)	1179, 1612, 1914
PspN4I	GGNNCC	7 cut(s)	132, 202, 768, 1150, 1178, 1397, 1716
PspPI	GGNCC	3 cut(s)	1912, 1948, 1983
PsuI	RGATCY	1 cut(s)	200
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	1097, 1583, 1941
SatI	GCNGC	6 cut(s)	6, 274, 548, 869, 1539, 1661
Sau3AI	GATC	9 cut(s)	164, 200, 669, 694, 750, 1218, 1459, 1816, 1845
Sau96I	GGNCC	3 cut(s)	1912, 1948, 1983
SchI	GAGTC	3 cut(s)	1268, 1421, 1776
ScrFI	CCNGG	7 cut(s)	153, 197, 198, 784, 1181, 1614, 1916
SduI	GDGCHC	1 cut(s)	1503
SfaNI	GCATC	7 cut(s)	276, 1003, 1033, 1423, 1508, 1873, 1967
SgrDI	CGTCGACG	1 cut(s)	218
SmaI	CCCGGG	1 cut(s)	198
SmlI	CTYRAG	5 cut(s)	19, 77, 83, 1940, 1962
SmoI	CTYRAG	5 cut(s)	19, 77, 83, 1940, 1962
SpeI	ACTAGT	1 cut(s)	1106
SphI	GCATGC	2 cut(s)	229, 1534
SseBI	AGGCCT	2 cut(s)	1507, 1740
SsiI	CCGC	7 cut(s)	257, 273, 547, 572, 830, 845, 1361
SspI	AATATT	1 cut(s)	1378
SspMI	CTAG	4 cut(s)	879, 1037, 1107, 1664
StuI	AGGCCT	2 cut(s)	1507, 1740
StyD4I	CCNGG	7 cut(s)	151, 195, 196, 782, 1179, 1612, 1914
StyI	CCWWGG	1 cut(s)	1791
TaaI	ACNGT	3 cut(s)	217, 340, 1148
TaiI	ACGT	1 cut(s)	1900
TaqI	TCGA	9 cut(s)	167, 172, 219, 466, 553, 906, 1011, 1479, 1770
TaqII	GACCGA	1 cut(s)	1317
TatI	WGTACW	6 cut(s)	303, 675, 936, 958, 1122, 1418
TauI	GCSGC	2 cut(s)	276, 550
TfiI	GAWTC	6 cut(s)	100, 109, 169, 188, 732, 1576
Tru1I	TTAA	3 cut(s)	1097, 1583, 1941
Tru9I	TTAA	3 cut(s)	1097, 1583, 1941
TscAI	CASTG	3 cut(s)	934, 1428, 1528
TseFI	GTSAC	1 cut(s)	992
TseI	GCWGC	4 cut(s)	5, 868, 1538, 1660
Tsp45I	GTSAC	1 cut(s)	992
TspDTI	ATGAA	7 cut(s)	416, 1082, 1086, 1303, 1505, 1560, 1721
TspGWI	ACGGA	2 cut(s)	143, 1917
TspMI	CCCGGG	1 cut(s)	196
TspRI	CASTG	3 cut(s)	934, 1428, 1528
Van91I	CCANNNNNTGG	1 cut(s)	1792
Vha464I	CTTAAG	1 cut(s)	1940
XapI	RAATTY	4 cut(s)	462, 1053, 1250, 1555
XbaI	TCTAGA	1 cut(s)	1036
XceI	RCATGY	3 cut(s)	229, 1123, 1534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1250
XmaI	CCCGGG	1 cut(s)	196
XmiI	GTMKAC	2 cut(s)	219, 1206
XmnI	GAANNNNTTC	1 cut(s)	974
XspI	CTAG	4 cut(s)	879, 1037, 1107, 1664
Zsp2I	ATGCAT	1 cut(s)	1438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.