Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011367

Physical Location & Seq

Genomic Coordinates Forward (+)

16395599 .. 16397174

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1162300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAAGGGTTTTTTACAGGAAGAGGAGGTGAAGGAGATGTGCAGATTTGCCGGTGAAGTCGGAATTCGAGGGGATATGCTTAGGGAGCTGAGGTTCAAGTGGGCACAAGAGAAGATGGAGGAAACTAAGTTTTATCTTTGCTTGGAGCGGCTTCGAGAGGGGGACAAGAAGGCGGAGGAAGCAGGGGAGGAAGTAGAAGGAATGCAAGGTGAAGCCACAAGGGAAGAGGTGAAGTCTAAGGTTGTTTCACTTCCGAAGAGGCGGGGGAAGATCAAGTACAATATATATGGTCTTGATCTGTCTGACCCCAAGTGGGTAGAAGTGGCTGATAGAATCCATGAGGCTGAAGAAATTACTTGGCCTCAGGAACCGAAATCCATATCCGGGAAATGCAAATTGGTCGAACCCAGTGCACAAGGCTCCCGCTTTACGCAGGGCTGCTCCCAAGTCTCGAACCCGAGACCTACCGCTCATGGGAAATGCAAATTGGTAACTGCGAAAATTATTCAAACGAATGTGGCGGATGACCAGTCTCCGTTTTTGGCTGAATGGATAGAGCTGCTTCAACCTAGTAGGATTGATTGGCTCAATTTGATGGATAGATTGAAAGAGCAGAACACTGGCTTATACTTCAAGGTCGCAGAACTTGTACCTGATGAGAAATCCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

224

Amino Acids

25.64

Weight (kDa)

5.54

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19520 AT1G19520
fragaria_vesca	FvH4_6g24430
malus_domestica	MD03G1139500.v1.1 MD11G1162300.v1.1
prunus_persica	Prupe.6G124500_v2.0.a1
pyrus_communis	pycom03g09450 pycom11g13170
rosa_chinensis	RchiOBHm_Chr7g0207751
rosa_laevigata	RLG00000003290
rosa_multiflora	Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012
rosa_roxburghii	Rroxscaffold_3G00251180
rosa_rugosa	Rorug07G0099500 Rorug07G0099600
rosa_samantha	Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800
rosa_wichuraiana	Rw7G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	148, 470
AciI	CCGC	6 cut(s)	148, 173, 262, 424, 468, 521
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	2 cut(s)	278, 651
AfiI	CCNNNNNNNGG	3 cut(s)	313, 384, 474
AgsI	TTSAA	5 cut(s)	97, 509, 566, 607, 634
AjuI	GAANNNNNNNTTGG	4 cut(s)	380, 412, 470, 502
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	2 cut(s)	88, 559
AluI	AGCT	2 cut(s)	88, 559
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	3 cut(s)	454, 454, 537
Alw44I	GTGCAC	1 cut(s)	411
Ama87I	CYCGRG	1 cut(s)	457
AoxI	GGCC	1 cut(s)	359
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	438, 559
ApoI	RAATTY	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	665
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	4 cut(s)	40, 65, 221, 241
AvaI	CYCGRG	1 cut(s)	457
AxyI	CCTNAGG	1 cut(s)	363
BaeGI	GKGCMC	2 cut(s)	106, 415
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
Bbv12I	GWGCWC	1 cut(s)	415
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	425, 546
BccI	CCATC	2 cut(s)	109, 589
BcgI	CGANNNNNNTGC	4 cut(s)	382, 392, 416, 426
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	3 cut(s)	454, 454, 537
BfaI	CTAG	2 cut(s)	570, 670
BisI	GCNGC	3 cut(s)	149, 439, 560
BlsI	GCNGC	3 cut(s)	150, 440, 561
Bme1390I	CCNGG	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	457
BmiI	GGNNCC	2 cut(s)	369, 421
BmrFI	CCNGG	1 cut(s)	385
BmrI	ACTGGG	1 cut(s)	402
BmuI	ACTGGG	1 cut(s)	402
Bpu10I	CCTNAGC	2 cut(s)	80, 89
BpuMI	CCSGG	1 cut(s)	385
BsaI	GGTCTC	1 cut(s)	454
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 384, 474
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	3 cut(s)	408, 529, 625
Bse21I	CCTNAGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	3 cut(s)	313, 384, 474
BseMII	CTCAG	2 cut(s)	80, 377
BseNI	ACTGG	3 cut(s)	408, 529, 625
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	2 cut(s)	106, 415
BseXI	GCAGC	2 cut(s)	425, 546
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	457
BsiSI	CCGG	2 cut(s)	51, 384
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	3 cut(s)	313, 384, 474
BsmAI	GTCTC	3 cut(s)	454, 454, 537
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	361
Bso31I	GGTCTC	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	457
Bsp1286I	GDGCHC	2 cut(s)	106, 415
Bsp143I	GATC	2 cut(s)	270, 295
BspACI	CCGC	6 cut(s)	148, 173, 262, 424, 468, 521
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	2 cut(s)	81, 376
BspLI	GGNNCC	2 cut(s)	369, 421
BspTNI	GGTCTC	1 cut(s)	454
BsrBI	CCGCTC	2 cut(s)	148, 470
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	408, 529, 625
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	2 cut(s)	270, 295
Bst6I	CTCTTC	3 cut(s)	15, 219, 251
BstDEI	CTNAG	5 cut(s)	80, 89, 126, 237, 363
BstF5I	GGATG	1 cut(s)	529
BstKTI	GATC	2 cut(s)	273, 298
BstMAI	GTCTC	3 cut(s)	454, 454, 537
BstMBI	GATC	2 cut(s)	270, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 179
BstSCI	CCNGG	1 cut(s)	383
BstSLI	GKGCMC	2 cut(s)	106, 415
BstV1I	GCAGC	2 cut(s)	425, 546
Bsu36I	CCTNAGG	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	2 cut(s)	415, 618
Cfr10I	RCCGGY	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	277, 650
CviAII	CATG	2 cut(s)	338, 473
CviQI	GTAC	2 cut(s)	277, 650
DdeI	CTNAG	5 cut(s)	80, 89, 126, 237, 363
DpnI	GATC	2 cut(s)	272, 297
DpnII	GATC	2 cut(s)	270, 295
Eam1104I	CTCTTC	3 cut(s)	15, 219, 251
EarI	CTCTTC	3 cut(s)	15, 219, 251
EciI	GGCGGA	2 cut(s)	188, 536
Eco31I	GGTCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	366
Eco81I	CCTNAGG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	341, 476
FaiI	YATR	8 cut(s)	77, 284, 286, 288, 339, 380, 474, 628
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	337, 472
FauI	CCCGC	2 cut(s)	255, 431
Fnu4HI	GCNGC	3 cut(s)	149, 439, 560
FokI	GGATG	1 cut(s)	536
Fsp4HI	GCNGC	3 cut(s)	149, 439, 560
FspBI	CTAG	2 cut(s)	570, 670
GluI	GCNGC	3 cut(s)	149, 439, 560
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	2 cut(s)	51, 384
Hin1II	CATG	2 cut(s)	341, 476
HinfI	GANTC	1 cut(s)	333
HpaII	CCGG	2 cut(s)	51, 384
HphI	GGTGA	4 cut(s)	40, 65, 221, 241
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	62, 255, 304
Hpy188III	TCNNGA	4 cut(s)	155, 293, 365, 451
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	3 cut(s)	25, 163, 191
HpyCH4V	TGCA	5 cut(s)	42, 205, 393, 413, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 179
HpyF3I	CTNAG	5 cut(s)	80, 89, 126, 237, 363
Hsp92II	CATG	2 cut(s)	341, 476
Kzo9I	GATC	2 cut(s)	270, 295
LmnI	GCTCC	4 cut(s)	85, 145, 425, 446
Lsp1109I	GCAGC	2 cut(s)	425, 546
MaeI	CTAG	2 cut(s)	570, 670
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	2 cut(s)	272, 297
MbiI	CCGCTC	2 cut(s)	148, 470
MboI	GATC	2 cut(s)	270, 295
MboII	GAAGA	6 cut(s)	32, 124, 236, 268, 280, 359
MhlI	GDGCHC	2 cut(s)	106, 415
MluCI	AATT	6 cut(s)	63, 351, 395, 485, 501, 589
MmeI	TCCRAC	1 cut(s)	40
MroXI	GAANNNNTTC	1 cut(s)	665
MspI	CCGG	2 cut(s)	51, 384
MspR9I	CCNGG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	85, 179
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	2 cut(s)	270, 295
NlaIII	CATG	2 cut(s)	341, 476
NlaIV	GGNNCC	2 cut(s)	369, 421
PctI	GAATGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	333
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	3 cut(s)	150, 440, 561
PspN4I	GGNNCC	2 cut(s)	369, 421
RsaI	GTAC	2 cut(s)	278, 651
RsaNI	GTAC	2 cut(s)	277, 650
SatI	GCNGC	3 cut(s)	149, 439, 560
Sau3AI	GATC	2 cut(s)	270, 295
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	2 cut(s)	106, 415
Sse9I	AATT	6 cut(s)	63, 351, 395, 485, 501, 589
SsiI	CCGC	6 cut(s)	148, 173, 262, 424, 468, 521
SspMI	CTAG	2 cut(s)	570, 670
StyD4I	CCNGG	1 cut(s)	383
TaqI	TCGA	4 cut(s)	67, 154, 402, 452
TasI	AATT	6 cut(s)	63, 351, 395, 485, 501, 589
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	333
TscAI	CASTG	2 cut(s)	415, 625
TseI	GCWGC	2 cut(s)	438, 559
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	415, 625
VneI	GTGCAC	1 cut(s)	411
XapI	RAATTY	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	2 cut(s)	570, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.