Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19520 AT1G19520 |
| fragaria_vesca | FvH4_6g24430 |
| malus_domestica | MD03G1139500.v1.1 MD11G1162300.v1.1 |
| prunus_persica | Prupe.6G124500_v2.0.a1 |
| pyrus_communis | pycom03g09450 pycom11g13170 |
| rosa_chinensis | RchiOBHm_Chr7g0207751 |
| rosa_laevigata | RLG00000003290 |
| rosa_multiflora | Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012 |
| rosa_roxburghii | Rroxscaffold_3G00251180 |
| rosa_rugosa | Rorug07G0099500 Rorug07G0099600 |
| rosa_samantha | Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800 |
| rosa_wichuraiana | Rw7G019920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2000 |
| AciI | CCGC | 2 cut(s) | 417, 2105 |
| AclWI | GGATC | 1 cut(s) | 317 |
| AcoI | YGGCCR | 2 cut(s) | 79, 1390 |
| AcsI | RAATTY | 5 cut(s) | 4, 882, 1203, 1458, 1705 |
| AdeI | CACNNNGTG | 1 cut(s) | 1493 |
| AfaI | GTAC | 4 cut(s) | 114, 1274, 1358, 1570 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 139, 140, 932, 933, 1612 |
| AflIII | ACRYGT | 1 cut(s) | 1269 |
| AhlI | ACTAGT | 1 cut(s) | 1256 |
| AjnI | CCWGG | 2 cut(s) | 912, 1762 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 929, 961, 1955, 1987 |
| AleI | CACNNNNGTG | 1 cut(s) | 1352 |
| Alw21I | GWGCWC | 1 cut(s) | 1673 |
| Alw26I | GTCTC | 3 cut(s) | 996, 1431, 1856 |
| Alw44I | GTGCAC | 1 cut(s) | 1669 |
| AlwI | GGATC | 1 cut(s) | 317 |
| AoxI | GGCC | 8 cut(s) | 79, 651, 908, 1390, 1929, 2061, 2097, 2137 |
| ApaI | GGGCCC | 1 cut(s) | 655 |
| ApaLI | GTGCAC | 1 cut(s) | 1669 |
| ApeKI | GCWGC | 6 cut(s) | 64, 101, 740, 1688, 1738, 1810 |
| ApoI | RAATTY | 5 cut(s) | 4, 882, 1203, 1458, 1705 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1020, 1124 |
| AspS9I | GGNCC | 7 cut(s) | 651, 652, 909, 1930, 2062, 2098, 2138 |
| AsuHPI | GGTGA | 9 cut(s) | 63, 242, 511, 614, 1508, 1613, 1832, 1871, 1994 |
| BaeGI | GKGCMC | 4 cut(s) | 655, 1653, 1673, 2132 |
| BalI | TGGCCA | 2 cut(s) | 81, 1392 |
| BanII | GRGCYC | 1 cut(s) | 655 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 809, 841, 1005, 1037 |
| BbsI | GAAGAC | 1 cut(s) | 491 |
| Bbv12I | GWGCWC | 1 cut(s) | 1673 |
| BbvI | GCAGC | 6 cut(s) | 51, 113, 752, 1700, 1750, 1822 |
| BccI | CCATC | 8 cut(s) | 266, 359, 400, 658, 1420, 1745, 2009, 2050 |
| BceAI | ACGGC | 1 cut(s) | 1266 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1151, 1185 |
| BciT130I | CCWGG | 2 cut(s) | 914, 1764 |
| BciVI | GTATCC | 3 cut(s) | 623, 1241, 2037 |
| BclI | TGATCA | 1 cut(s) | 1368 |
| BcoDI | GTCTC | 3 cut(s) | 996, 1431, 1856 |
| BcuI | ACTAGT | 1 cut(s) | 1256 |
| BfaI | CTAG | 7 cut(s) | 24, 1029, 1187, 1257, 1712, 1814, 2102 |
| BfuI | GTATCC | 3 cut(s) | 623, 1241, 2037 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2105 |
| BisI | GCNGC | 7 cut(s) | 65, 102, 741, 1689, 1739, 1811, 2106 |
| BlpI | GCTNAGC | 1 cut(s) | 1827 |
| BlsI | GCNGC | 7 cut(s) | 66, 103, 742, 1690, 1740, 1812, 2107 |
| Bme1390I | CCNGG | 2 cut(s) | 914, 1764 |
| BmgT120I | GGNCC | 7 cut(s) | 651, 652, 909, 1930, 2062, 2098, 2138 |
| BmiI | GGNNCC | 4 cut(s) | 653, 911, 918, 1547 |
| BmrFI | CCNGG | 2 cut(s) | 914, 1764 |
| BmrI | ACTGGG | 2 cut(s) | 104, 942 |
| BmsI | GCATC | 5 cut(s) | 420, 1153, 1183, 1725, 2117 |
| BmuI | ACTGGG | 2 cut(s) | 104, 942 |
| BpiI | GAAGAC | 1 cut(s) | 491 |
| BpmI | CTGGAG | 2 cut(s) | 1785, 1935 |
| Bpu10I | CCTNAGC | 2 cut(s) | 638, 1908 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1827 |
| BpuEI | CTTGAG | 2 cut(s) | 201, 207 |
| Bsa29I | ATCGAT | 1 cut(s) | 1161 |
| BsaJI | CCNNGG | 5 cut(s) | 82, 96, 616, 912, 2065 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 139, 140, 932, 933, 1612 |
| Bse1I | ACTGG | 3 cut(s) | 110, 937, 1084 |
| Bse3DI | GCAATG | 2 cut(s) | 455, 1571 |
| BseBI | CCWGG | 2 cut(s) | 914, 1764 |
| BseCI | ATCGAT | 1 cut(s) | 1161 |
| BseDI | CCNNGG | 5 cut(s) | 82, 96, 616, 912, 2065 |
| BseGI | GGATG | 2 cut(s) | 1137, 1756 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 139, 140, 932, 933, 1612 |
| BseMI | GCAATG | 2 cut(s) | 455, 1571 |
| BseMII | CTCAG | 6 cut(s) | 240, 666, 945, 1188, 1398, 1818 |
| BseNI | ACTGG | 3 cut(s) | 110, 937, 1084 |
| BseRI | GAGGAG | 4 cut(s) | 278, 791, 1339, 1857 |
| BseSI | GKGCMC | 4 cut(s) | 655, 1653, 1673, 2132 |
| BseXI | GCAGC | 6 cut(s) | 51, 113, 752, 1700, 1750, 1822 |
| BseYI | CCCAGC | 1 cut(s) | 1798 |
| BshFI | GGCC | 8 cut(s) | 81, 653, 910, 1392, 1931, 2063, 2099, 2139 |
| BshVI | ATCGAT | 1 cut(s) | 1161 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1673 |
| BslFI | GGGAC | 1 cut(s) | 280 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 139, 140, 932, 933, 1612 |
| BsmAI | GTCTC | 3 cut(s) | 996, 1431, 1856 |
| BsmFI | GGGAC | 1 cut(s) | 280 |
| BsmI | GAATGC | 2 cut(s) | 375, 756 |
| BsnI | GGCC | 8 cut(s) | 81, 653, 910, 1392, 1931, 2063, 2099, 2139 |
| Bsp120I | GGGCCC | 1 cut(s) | 651 |
| Bsp1286I | GDGCHC | 4 cut(s) | 655, 1653, 1673, 2132 |
| Bsp1407I | TGTACA | 3 cut(s) | 1272, 1356, 1568 |
| Bsp143I | GATC | 5 cut(s) | 68, 309, 844, 1368, 1609 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1827 |
| Bsp19I | CCATGG | 1 cut(s) | 96 |
| BspACI | CCGC | 2 cut(s) | 417, 2105 |
| BspANI | GGCC | 8 cut(s) | 81, 653, 910, 1392, 1931, 2063, 2099, 2139 |
| BspCNI | CTCAG | 6 cut(s) | 241, 667, 946, 1189, 1399, 1819 |
| BspDI | ATCGAT | 1 cut(s) | 1161 |
| BspHI | TCATGA | 2 cut(s) | 375, 886 |
| BspLI | GGNNCC | 4 cut(s) | 653, 911, 918, 1547 |
| BspPI | GGATC | 1 cut(s) | 317 |
| BsrDI | GCAATG | 2 cut(s) | 455, 1571 |
| BsrGI | TGTACA | 3 cut(s) | 1272, 1356, 1568 |
| BsrI | ACTGG | 3 cut(s) | 110, 937, 1084 |
| BssECI | CCNNGG | 5 cut(s) | 82, 96, 616, 912, 2065 |
| BssMI | GATC | 5 cut(s) | 68, 309, 844, 1368, 1609 |
| BssT1I | CCWWGG | 1 cut(s) | 96 |
| Bst2UI | CCWGG | 2 cut(s) | 914, 1764 |
| Bst4CI | ACNGT | 4 cut(s) | 86, 447, 490, 1298 |
| Bst6I | CTCTTC | 3 cut(s) | 702, 768, 2089 |
| BstAUI | TGTACA | 3 cut(s) | 1272, 1356, 1568 |
| BstC8I | GCNNGC | 6 cut(s) | 30, 756, 1390, 1678, 1682, 1686 |
| BstDSI | CCRYGG | 3 cut(s) | 82, 96, 2065 |
| BstEII | GGTNACC | 2 cut(s) | 230, 1601 |
| BstF5I | GGATG | 2 cut(s) | 1137, 1756 |
| BstKTI | GATC | 5 cut(s) | 71, 312, 847, 1371, 1612 |
| BstMAI | GTCTC | 3 cut(s) | 996, 1431, 1856 |
| BstMBI | GATC | 5 cut(s) | 68, 309, 844, 1368, 1609 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 634, 1284, 1307, 1677, 1937, 2105, 2136 |
| BstNI | CCWGG | 2 cut(s) | 914, 1764 |
| BstNSI | RCATGY | 2 cut(s) | 1273, 1684 |
| BstPI | GGTNACC | 2 cut(s) | 230, 1601 |
| BstSCI | CCNGG | 2 cut(s) | 912, 1762 |
| BstSLI | GKGCMC | 4 cut(s) | 655, 1653, 1673, 2132 |
| BstV1I | GCAGC | 6 cut(s) | 51, 113, 752, 1700, 1750, 1822 |
| BstV2I | GAAGAC | 1 cut(s) | 491 |
| Bsu15I | ATCGAT | 1 cut(s) | 1161 |
| BsuI | GTATCC | 3 cut(s) | 623, 1241, 2037 |
| BsuRI | GGCC | 8 cut(s) | 81, 653, 910, 1392, 1931, 2063, 2099, 2139 |
| BsuTUI | ATCGAT | 1 cut(s) | 1161 |
| BtgI | CCRYGG | 3 cut(s) | 82, 96, 2065 |
| BtsCI | GGATG | 2 cut(s) | 1137, 1756 |
| BtsI | GCAGTG | 1 cut(s) | 1671 |
| BtsIMutI | CAGTG | 5 cut(s) | 61, 495, 1077, 1303, 1671 |
| Cac8I | GCNNGC | 6 cut(s) | 30, 756, 1390, 1678, 1682, 1686 |
| CciI | TCATGA | 2 cut(s) | 375, 886 |
| Cfr13I | GGNCC | 7 cut(s) | 651, 652, 909, 1930, 2062, 2098, 2138 |
| ClaI | ATCGAT | 1 cut(s) | 1161 |
| CseI | GACGC | 2 cut(s) | 33, 686 |
| Csp6I | GTAC | 4 cut(s) | 113, 1273, 1357, 1569 |
| CviQI | GTAC | 4 cut(s) | 113, 1273, 1357, 1569 |
| DpnI | GATC | 5 cut(s) | 70, 311, 846, 1370, 1611 |
| DpnII | GATC | 5 cut(s) | 68, 309, 844, 1368, 1609 |
| DraIII | CACNNNGTG | 1 cut(s) | 1493 |
| EaeI | YGGCCR | 2 cut(s) | 79, 1390 |
| Eam1104I | CTCTTC | 3 cut(s) | 702, 768, 2089 |
| EarI | CTCTTC | 3 cut(s) | 702, 768, 2089 |
| Eco130I | CCWWGG | 1 cut(s) | 96 |
| Eco24I | GRGCYC | 1 cut(s) | 655 |
| Eco32I | GATATC | 1 cut(s) | 1243 |
| Eco91I | GGTNACC | 2 cut(s) | 230, 1601 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1930, 2138 |
| EcoO65I | GGTNACC | 2 cut(s) | 230, 1601 |
| EcoRII | CCWGG | 2 cut(s) | 912, 1762 |
| EcoRV | GATATC | 1 cut(s) | 1243 |
| EcoT14I | CCWWGG | 1 cut(s) | 96 |
| EcoT38I | GRGCYC | 1 cut(s) | 655 |
| ErhI | CCWWGG | 1 cut(s) | 96 |
| FaqI | GGGAC | 1 cut(s) | 280 |
| FauI | CCCGC | 1 cut(s) | 410 |
| FbaI | TGATCA | 1 cut(s) | 1368 |
| Fnu4HI | GCNGC | 7 cut(s) | 65, 102, 741, 1689, 1739, 1811, 2106 |
| FokI | GGATG | 2 cut(s) | 1124, 1763 |
| FriOI | GRGCYC | 1 cut(s) | 655 |
| Fsp4HI | GCNGC | 7 cut(s) | 65, 102, 741, 1689, 1739, 1811, 2106 |
| FspBI | CTAG | 7 cut(s) | 24, 1029, 1187, 1257, 1712, 1814, 2102 |
| GluI | GCNGC | 7 cut(s) | 65, 102, 741, 1689, 1739, 1811, 2106 |
| GsaI | CCCAGC | 1 cut(s) | 1802 |
| GsuI | CTGGAG | 2 cut(s) | 1785, 1935 |
| HaeIII | GGCC | 8 cut(s) | 81, 653, 910, 1392, 1931, 2063, 2099, 2139 |
| HgaI | GACGC | 2 cut(s) | 33, 686 |
| HinfI | GANTC | 9 cut(s) | 245, 276, 440, 854, 1327, 1409, 1562, 1726, 1864 |
| HphI | GGTGA | 9 cut(s) | 63, 242, 511, 614, 1508, 1613, 1832, 1871, 1994 |
| Hpy166II | GTNNAC | 4 cut(s) | 450, 1267, 1357, 1671 |
| Hpy188I | TCNGA | 7 cut(s) | 159, 250, 259, 403, 617, 687, 853 |
| Hpy8I | GTNNAC | 4 cut(s) | 450, 1267, 1357, 1671 |
| HpyAV | CCTTC | 7 cut(s) | 523, 535, 547, 725, 1135, 1588, 1957 |
| HpyCH4III | ACNGT | 4 cut(s) | 86, 447, 490, 1298 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 634, 1284, 1307, 1677, 1937, 2105, 2136 |
| Ksp22I | TGATCA | 1 cut(s) | 1368 |
| Kzo9I | GATC | 5 cut(s) | 68, 309, 844, 1368, 1609 |
| LmnI | GCTCC | 4 cut(s) | 694, 1508, 1620, 1966 |
| Lsp1109I | GCAGC | 6 cut(s) | 51, 113, 752, 1700, 1750, 1822 |
| LweI | GCATC | 5 cut(s) | 420, 1153, 1183, 1725, 2117 |
| MaeI | CTAG | 7 cut(s) | 24, 1029, 1187, 1257, 1712, 1814, 2102 |
| MaeIII | GTNAC | 6 cut(s) | 34, 230, 949, 976, 1142, 1601 |
| MalI | GATC | 5 cut(s) | 70, 311, 846, 1370, 1611 |
| MboI | GATC | 5 cut(s) | 68, 309, 844, 1368, 1609 |
| MfeI | CAATTG | 1 cut(s) | 1970 |
| MhlI | GDGCHC | 4 cut(s) | 655, 1653, 1673, 2132 |
| MlsI | TGGCCA | 2 cut(s) | 81, 1392 |
| MluNI | TGGCCA | 2 cut(s) | 81, 1392 |
| MlyI | GAGTC | 6 cut(s) | 285, 848, 1336, 1418, 1571, 1858 |
| MmeI | TCCRAC | 1 cut(s) | 1258 |
| Mox20I | TGGCCA | 2 cut(s) | 81, 1392 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1020, 1124 |
| MscI | TGGCCA | 2 cut(s) | 81, 1392 |
| MseI | TTAA | 8 cut(s) | 195, 282, 579, 1092, 1247, 1875, 2025, 2091 |
| MslI | CAYNNNNRTG | 2 cut(s) | 95, 1352 |
| Msp20I | TGGCCA | 2 cut(s) | 81, 1392 |
| MspR9I | CCNGG | 2 cut(s) | 914, 1764 |
| MunI | CAATTG | 1 cut(s) | 1970 |
| Mva1269I | GAATGC | 2 cut(s) | 375, 756 |
| MvaI | CCWGG | 2 cut(s) | 914, 1764 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 634, 1284, 1307, 1677, 1937, 2105, 2136 |
| NcoI | CCATGG | 1 cut(s) | 96 |
| NdeII | GATC | 5 cut(s) | 68, 309, 844, 1368, 1609 |
| NlaIV | GGNNCC | 4 cut(s) | 653, 911, 918, 1547 |
| NmeAIII | GCCGAG | 1 cut(s) | 1876 |
| NmuCI | GTSAC | 4 cut(s) | 230, 976, 1142, 1601 |
| NspI | RCATGY | 2 cut(s) | 1273, 1684 |
| OliI | CACNNNNGTG | 1 cut(s) | 1352 |
| PaeI | GCATGC | 1 cut(s) | 1684 |
| PagI | TCATGA | 2 cut(s) | 375, 886 |
| PciI | ACATGT | 1 cut(s) | 1269 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2119 |
| PctI | GAATGC | 2 cut(s) | 375, 756 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1020, 1124 |
| PfeI | GAWTC | 3 cut(s) | 245, 440, 1726 |
| PkrI | GCNGC | 7 cut(s) | 66, 103, 742, 1690, 1740, 1812, 2107 |
| PleI | GAGTC | 6 cut(s) | 284, 848, 1335, 1417, 1570, 1858 |
| PpsI | GAGTC | 6 cut(s) | 284, 848, 1335, 1417, 1570, 1858 |
| PscI | ACATGT | 1 cut(s) | 1269 |
| PsiI | TTATAA | 1 cut(s) | 2000 |
| Psp6I | CCWGG | 2 cut(s) | 912, 1762 |
| PspEI | GGTNACC | 2 cut(s) | 230, 1601 |
| PspFI | CCCAGC | 1 cut(s) | 1798 |
| PspGI | CCWGG | 2 cut(s) | 912, 1762 |
| PspN4I | GGNNCC | 4 cut(s) | 653, 911, 918, 1547 |
| PspOMI | GGGCCC | 1 cut(s) | 651 |
| PspPI | GGNCC | 7 cut(s) | 651, 652, 909, 1930, 2062, 2098, 2138 |
| RsaI | GTAC | 4 cut(s) | 114, 1274, 1358, 1570 |
| RsaNI | GTAC | 4 cut(s) | 113, 1273, 1357, 1569 |
| RseI | CAYNNNNRTG | 2 cut(s) | 95, 1352 |
| SaqAI | TTAA | 8 cut(s) | 195, 282, 579, 1092, 1247, 1875, 2025, 2091 |
| SatI | GCNGC | 7 cut(s) | 65, 102, 741, 1689, 1739, 1811, 2106 |
| Sau3AI | GATC | 5 cut(s) | 68, 309, 844, 1368, 1609 |
| Sau96I | GGNCC | 7 cut(s) | 651, 652, 909, 1930, 2062, 2098, 2138 |
| SchI | GAGTC | 6 cut(s) | 285, 848, 1336, 1418, 1571, 1858 |
| ScrFI | CCNGG | 2 cut(s) | 914, 1764 |
| SduI | GDGCHC | 4 cut(s) | 655, 1653, 1673, 2132 |
| SfaNI | GCATC | 5 cut(s) | 420, 1153, 1183, 1725, 2117 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 95, 1352 |
| SmlI | CTYRAG | 2 cut(s) | 216, 222 |
| SmoI | CTYRAG | 2 cut(s) | 216, 222 |
| SpeI | ACTAGT | 1 cut(s) | 1256 |
| SphI | GCATGC | 1 cut(s) | 1684 |
| SsiI | CCGC | 2 cut(s) | 417, 2105 |
| SspMI | CTAG | 7 cut(s) | 24, 1029, 1187, 1257, 1712, 1814, 2102 |
| StyD4I | CCNGG | 2 cut(s) | 912, 1762 |
| StyI | CCWWGG | 1 cut(s) | 96 |
| TaaI | ACNGT | 4 cut(s) | 86, 447, 490, 1298 |
| TaqI | TCGA | 2 cut(s) | 1161, 2113 |
| TaqII | GACCGA | 1 cut(s) | 1467 |
| TatI | WGTACW | 3 cut(s) | 1272, 1356, 1568 |
| TauI | GCSGC | 1 cut(s) | 2108 |
| TfiI | GAWTC | 3 cut(s) | 245, 440, 1726 |
| Tru1I | TTAA | 8 cut(s) | 195, 282, 579, 1092, 1247, 1875, 2025, 2091 |
| Tru9I | TTAA | 8 cut(s) | 195, 282, 579, 1092, 1247, 1875, 2025, 2091 |
| TscAI | CASTG | 5 cut(s) | 61, 495, 1084, 1303, 1678 |
| TseFI | GTSAC | 4 cut(s) | 230, 976, 1142, 1601 |
| TseI | GCWGC | 6 cut(s) | 64, 101, 740, 1688, 1738, 1810 |
| Tsp45I | GTSAC | 4 cut(s) | 230, 976, 1142, 1601 |
| TspGWI | ACGGA | 2 cut(s) | 1130, 2067 |
| TspRI | CASTG | 5 cut(s) | 61, 495, 1084, 1303, 1678 |
| VneI | GTGCAC | 1 cut(s) | 1669 |
| XapI | RAATTY | 5 cut(s) | 4, 882, 1203, 1458, 1705 |
| XceI | RCATGY | 2 cut(s) | 1273, 1684 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1020, 1124 |
| XspI | CTAG | 7 cut(s) | 24, 1029, 1187, 1257, 1712, 1814, 2102 |