Rw7G019920

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
22216048 .. 22219060
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019920.1

Sequence Viewer

Length: 1524 bp
ATGCTTAGGGAGCTCAGGTTCAAGTGGGCTCGCGAGAAGATGGAGGAGACTGAGTTTTATGAGAGCTTGGAGCTTCTTAGAGAACAAGAGAAAGCCCAAGAGAAAGGGGAGGAGGAAGGAGAGGTTGTGCAAGCTGAGGAGGATGGTGTAACTGAGGTGAATCCTAAGGTTGGTTCTCTTCCCAAGAGGCGAGGGAAGATAAGGTACAAAATTTATGGTCTTGATCTCTCTGATCCGAAGTGGGTTGAAGTTGTTGATAGAATCCATGAGGCAGGGGAGGTCATTTGTCCCCAGGAACCGAAACCAATATCTGGGAAATGCAAGTTGGTTACTGAGAGAATTCTTCAATCAAATGAGGCAGATGACATGTCTCCACTTTTGGCTGAATGGGTAGAGTTGCTCCAACCTAGTAGGATTGATTGGGACAATTTGCTTGATCAATTGAAAGAGCAGAACACTAGGTTATACTTTAAGGTGGCAGAGCTTGTATTGGATGAGAAATCTTTCCAGACGAACATCCGTGACTACTCCATGCTTATCGATGCTTATGCCAAGGAAAATAGCCTAGAAGATGCTGAGAGAATTTTAAAGAAGATGAATGAAAATGGGTTTGAACCTGATATCTTCACAACCACTATTTTGGTTCACATGTACAGCAAGGCAGGCAATCTTGAAGGTGCCGACCAAGCATTTAAGACATTGAAGAGCCAGGGCTTCCGACCAGATATGAAGGTCTACAATTCCATGATCAAGGCATATGTAAATGCTAACCAACCAAAATTGGGGGAGTCATTGATGAGAGAGATGGAATCAAGAGACATCAAACCCACAAAAGAAATTTACATGGCATTGCTTCAATCATTTGCCCAACTTGGTGATGTGAAGGGAGCAGAACGAATTGTCAACACTATGATATTGGCAGGTTTTCAGCCAACTTTAGAATCTTGTTCAGTGCTTGTTGAGGCATATGGAAAAGCTGGTGACCCTGATCAGGCAAGGCACAACTTTGATTACATAATAAAAGTTGGGCACAAACCTGACGACAAGTGCACTGCGACCATGATTGCAGCTTATGAAAAGAAGAATTTACTTGATAAGGCACTGGATTTGTTGTTGCAGCTTGAAAAGGATGGCTTTGAGCCGGGAGTTGCTACTTACACAGTTCTTGTAGATTGGCTGGGAAAACTGGAGCTAGTTAGTGAGGCTGAACAGCTATTGGACAAAATTGCTGAGCTGGGTGAGGCTCCTCCATTGCAACTTCATGTAAGCATTTGCGATATGTATGCTAGGGCTGGATTTGAGAAAAAGGCACTACAAGCTTTGGGAGTTTTGGAGGCTAAGAAGGAGCAACTGAGTTTAGATGACTTTGAGACAATTATCAAGGGGCTTATGGCTGGTGGATTTTTTCAGGATGCTCAGAGGATACGGGGAGTGATGGAGGCTCAGGGTTTTGTTGCGTCACAGCAACTTCAGTTGCACCTAGTGGCTAAAAGTATTAACCTCAAGAGGCCATCAATGAGATAA

Protein Analysis

507

Amino Acids

57.55

Weight (kDa)

5.06

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 163 - 258 5.6e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 165 - 210 1.6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 176 - 220 7e-10 PPR repeat family
PPR_long PF17177 182 - 319 3.1e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 194 - 255 5.7e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 241 - 277 4.2e-06 PPR repeat family
PPR_3 PF13812 264 - 325 1.5e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 353 - 394 2.2e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011367)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 911
AccB1I GGYRCC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 311
AccI GTMKAC 1 cut(s) 735
AccII CGCG 1 cut(s) 33
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 5 cut(s) 210, 339, 582, 837, 1084
AcuI CTGAAG 1 cut(s) 1454
AdeI CACNNNGTG 1 cut(s) 1483
AfaI GTAC 2 cut(s) 206, 653
AfiI CCNNNNNNNGG 4 cut(s) 170, 311, 782, 991
AflIII ACRYGT 2 cut(s) 366, 648
AgsI TTSAA 9 cut(s) 22, 248, 347, 445, 614, 674, 703, 857, 1124
AjnI CCWGG 2 cut(s) 291, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AloI GAACNNNNNNTCC 1 cut(s) 34
Alw21I GWGCWC 2 cut(s) 15, 1052
Alw26I GTCTC 4 cut(s) 41, 375, 810, 1364
Alw44I GTGCAC 1 cut(s) 1048
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 1508
ApaLI GTGCAC 1 cut(s) 1048
ApeKI GCWGC 2 cut(s) 1067, 1117
ApoI RAATTY 5 cut(s) 210, 339, 582, 837, 1084
Asp700I GAANNNNTTC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 1143
AsuHPI GGTGA 4 cut(s) 169, 887, 992, 1250
AxyI CCTNAGG 1 cut(s) 165
BaeGI GKGCMC 2 cut(s) 1032, 1052
BanI GGYRCC 1 cut(s) 677
BanII GRGCYC 2 cut(s) 15, 31
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
Bbv12I GWGCWC 2 cut(s) 15, 1052
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 1079, 1129
BccI CCATC 6 cut(s) 34, 137, 799, 1124, 1429, 1519
BcgI CGANNNNNNTGC 4 cut(s) 530, 564, 1265, 1299
BciT130I CCWGG 2 cut(s) 293, 710
BciVI GTATCC 1 cut(s) 1416
BclI TGATCA 3 cut(s) 436, 747, 988
BcnI CCSGG 1 cut(s) 1143
BcoDI GTCTC 4 cut(s) 41, 375, 810, 1364
BfaI CTAG 6 cut(s) 408, 459, 566, 1193, 1287, 1481
BfuAI ACCTGC 1 cut(s) 911
BfuI GTATCC 1 cut(s) 1416
BisI GCNGC 2 cut(s) 1068, 1118
BlpI GCTNAGC 1 cut(s) 1230
BlsI GCNGC 2 cut(s) 1069, 1119
Bme1390I CCNGG 3 cut(s) 293, 710, 1143
BmiI GGNNCC 3 cut(s) 297, 679, 1245
BmrFI CCNGG 3 cut(s) 293, 710, 1143
BmsI GCATC 3 cut(s) 532, 562, 1402
BpmI CTGGAG 1 cut(s) 1208
Bpu10I CCTNAGC 4 cut(s) 5, 14, 135, 1443
Bpu1102I GCTNAGC 1 cut(s) 1230
BpuEI CTTGAG 1 cut(s) 1487
BpuMI CCSGG 1 cut(s) 1143
Bsa29I ATCGAT 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 291, 552, 709
BsaXI ACNNNNNCTCC 5 cut(s) 32, 38, 68, 111, 141
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 311, 782, 991
Bse1I ACTGG 2 cut(s) 1107, 1191
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 2 cut(s) 848, 1250
BseBI CCWGG 2 cut(s) 293, 710
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 3 cut(s) 291, 552, 709
BseGI GGATG 5 cut(s) 148, 499, 516, 1135, 1417
BseLI CCNNNNNNNGG 4 cut(s) 170, 311, 782, 991
BseMI GCAATG 2 cut(s) 848, 1250
BseNI ACTGG 2 cut(s) 1107, 1191
BseRI GAGGAG 4 cut(s) 59, 125, 152, 1236
BseSI GKGCMC 2 cut(s) 1032, 1052
BseXI GCAGC 2 cut(s) 1079, 1129
BseYI CCCAGC 2 cut(s) 1177, 1234
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 1510
BshNI GGYRCC 1 cut(s) 677
BshVI ATCGAT 1 cut(s) 540
BsiHKAI GWGCWC 2 cut(s) 15, 1052
BsiSI CCGG 1 cut(s) 1142
BslFI GGGAC 2 cut(s) 273, 437
BslI CCNNNNNNNGG 4 cut(s) 170, 311, 782, 991
BsmAI GTCTC 4 cut(s) 41, 375, 810, 1364
BsmFI GGGAC 2 cut(s) 273, 437
BsnI GGCC 1 cut(s) 1510
Bsp1286I GDGCHC 4 cut(s) 15, 31, 1032, 1052
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 5 cut(s) 223, 232, 436, 747, 988
Bsp1720I GCTNAGC 1 cut(s) 1230
Bsp68I TCGCGA 1 cut(s) 33
BspANI GGCC 1 cut(s) 1510
BspDI ATCGAT 1 cut(s) 540
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 3 cut(s) 297, 679, 1245
BspMI ACCTGC 1 cut(s) 911
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 698
BspT107I GGYRCC 1 cut(s) 677
BsrDI GCAATG 2 cut(s) 848, 1250
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 2 cut(s) 1107, 1191
BssECI CCNNGG 3 cut(s) 291, 552, 709
BssMI GATC 5 cut(s) 223, 232, 436, 747, 988
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 2 cut(s) 293, 710
Bst4CI ACNGT 1 cut(s) 1162
Bst6I CTCTTC 2 cut(s) 183, 698
BstAUI TGTACA 1 cut(s) 651
BstC8I GCNNGC 3 cut(s) 31, 132, 664
BstEII GGTNACC 1 cut(s) 980
BstF5I GGATG 5 cut(s) 148, 499, 516, 1135, 1417
BstFNI CGCG 1 cut(s) 33
BstKTI GATC 5 cut(s) 226, 235, 439, 750, 991
BstMAI GTCTC 4 cut(s) 41, 375, 810, 1364
BstMBI GATC 5 cut(s) 223, 232, 436, 747, 988
BstMWI GCNNNNNNNGC 4 cut(s) 10, 663, 686, 1316
BstNI CCWGG 2 cut(s) 293, 710
BstNSI RCATGY 2 cut(s) 370, 652
BstPI GGTNACC 1 cut(s) 980
BstSCI CCNGG 3 cut(s) 291, 708, 1141
BstSLI GKGCMC 2 cut(s) 1032, 1052
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 1079, 1129
BstXI CCANNNNNNTGG 1 cut(s) 640
Bsu15I ATCGAT 1 cut(s) 540
Bsu36I CCTNAGG 1 cut(s) 165
BsuI GTATCC 1 cut(s) 1416
BsuRI GGCC 1 cut(s) 1510
BsuTUI ATCGAT 1 cut(s) 540
BtsCI GGATG 5 cut(s) 148, 499, 516, 1135, 1417
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 3 cut(s) 957, 1050, 1100
BtuMI TCGCGA 1 cut(s) 33
BveI ACCTGC 1 cut(s) 911
Cac8I GCNNGC 3 cut(s) 31, 132, 664
ClaI ATCGAT 1 cut(s) 540
CseI GACGC 1 cut(s) 1446
Csp6I GTAC 2 cut(s) 205, 652
CviAII CATG 8 cut(s) 266, 367, 532, 649, 745, 844, 1060, 1262
CviQI GTAC 2 cut(s) 205, 652
DpnI GATC 5 cut(s) 225, 234, 438, 749, 990
DpnII GATC 5 cut(s) 223, 232, 436, 747, 988
DraI TTTAAA 1 cut(s) 588
DraIII CACNNNGTG 1 cut(s) 1483
Eam1104I CTCTTC 2 cut(s) 183, 698
EarI CTCTTC 2 cut(s) 183, 698
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 552
Eco24I GRGCYC 2 cut(s) 15, 31
Eco32I GATATC 1 cut(s) 622
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 1454
Eco81I CCTNAGG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 980
EcoICRI GAGCTC 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 980
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 2 cut(s) 291, 708
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 552
EcoT38I GRGCYC 2 cut(s) 15, 31
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 8 cut(s) 269, 370, 535, 652, 748, 847, 1063, 1265
FalI AAGNNNNNCTT 2 cut(s) 1118, 1150
FaqI GGGAC 2 cut(s) 273, 437
FatI CATG 8 cut(s) 265, 366, 531, 648, 744, 843, 1059, 1261
FauNDI CATATG 2 cut(s) 757, 967
FbaI TGATCA 3 cut(s) 436, 747, 988
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 2 cut(s) 1068, 1118
FokI GGATG 5 cut(s) 155, 503, 506, 1142, 1424
FriOI GRGCYC 2 cut(s) 15, 31
Fsp4HI GCNGC 2 cut(s) 1068, 1118
FspBI CTAG 6 cut(s) 408, 459, 566, 1193, 1287, 1481
GluI GCNGC 2 cut(s) 1068, 1118
GsaI CCCAGC 2 cut(s) 1181, 1238
GsuI CTGGAG 1 cut(s) 1208
HaeIII GGCC 1 cut(s) 1510
HapII CCGG 1 cut(s) 1142
HgaI GACGC 1 cut(s) 1446
Hin1II CATG 8 cut(s) 269, 370, 535, 652, 748, 847, 1063, 1265
HincII GTYRAC 1 cut(s) 904
HindII GTYRAC 1 cut(s) 904
HindIII AAGCTT 1 cut(s) 1317
HinfI GANTC 5 cut(s) 160, 261, 788, 809, 941
HpaII CCGG 1 cut(s) 1142
HphI GGTGA 4 cut(s) 169, 887, 992, 1250
Hpy166II GTNNAC 4 cut(s) 646, 736, 904, 1050
Hpy188I TCNGA 4 cut(s) 232, 237, 719, 1419
Hpy188III TCNNGA 7 cut(s) 32, 221, 508, 671, 813, 1409, 1504
Hpy8I GTNNAC 4 cut(s) 646, 736, 904, 1050
HpyAV CCTTC 5 cut(s) 110, 668, 724, 877, 1336
HpyCH4III ACNGT 1 cut(s) 1162
HpyCH4V TGCA 7 cut(s) 130, 321, 1050, 1067, 1117, 1255, 1477
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 663, 686, 1316
Hsp92II CATG 8 cut(s) 269, 370, 535, 652, 748, 847, 1063, 1265
Ksp22I TGATCA 3 cut(s) 436, 747, 988
Kzo9I GATC 5 cut(s) 223, 232, 436, 747, 988
LguI GCTCTTC 1 cut(s) 698
LmnI GCTCC 7 cut(s) 10, 70, 405, 887, 1189, 1249, 1345
Lsp1109I GCAGC 2 cut(s) 1079, 1129
LweI GCATC 3 cut(s) 532, 562, 1402
MaeI CTAG 6 cut(s) 408, 459, 566, 1193, 1287, 1481
MaeIII GTNAC 5 cut(s) 148, 328, 521, 980, 1458
MalI GATC 5 cut(s) 225, 234, 438, 749, 990
MboI GATC 5 cut(s) 223, 232, 436, 747, 988
MboII GAAGA 9 cut(s) 49, 170, 208, 335, 581, 604, 616, 715, 1093
MfeI CAATTG 1 cut(s) 440
MhlI GDGCHC 4 cut(s) 15, 31, 1032, 1052
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 2 cut(s) 427, 742
MroXI GAANNNNTTC 1 cut(s) 503
MseI TTAA 4 cut(s) 471, 587, 693, 1497
MspI CCGG 1 cut(s) 1142
MspR9I CCNGG 3 cut(s) 293, 710, 1143
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 2 cut(s) 293, 710
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 4 cut(s) 10, 663, 686, 1316
NciI CCSGG 1 cut(s) 1143
NdeI CATATG 2 cut(s) 757, 967
NdeII GATC 5 cut(s) 223, 232, 436, 747, 988
NlaIII CATG 8 cut(s) 269, 370, 535, 652, 748, 847, 1063, 1265
NlaIV GGNNCC 3 cut(s) 297, 679, 1245
NmuCI GTSAC 3 cut(s) 521, 980, 1458
NruI TCGCGA 1 cut(s) 33
NspI RCATGY 2 cut(s) 370, 652
PciI ACATGT 2 cut(s) 366, 648
PciSI GCTCTTC 1 cut(s) 698
PdmI GAANNNNTTC 1 cut(s) 503
PfeI GAWTC 4 cut(s) 160, 261, 809, 941
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 2 cut(s) 1069, 1119
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
PscI ACATGT 2 cut(s) 366, 648
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 291, 708
PspEI GGTNACC 1 cut(s) 980
PspFI CCCAGC 2 cut(s) 1177, 1234
PspGI CCWGG 2 cut(s) 291, 708
PspN4I GGNNCC 3 cut(s) 297, 679, 1245
RruI TCGCGA 1 cut(s) 33
RsaI GTAC 2 cut(s) 206, 653
RsaNI GTAC 2 cut(s) 205, 652
SacI GAGCTC 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 698
SaqAI TTAA 4 cut(s) 471, 587, 693, 1497
SatI GCNGC 2 cut(s) 1068, 1118
Sau3AI GATC 5 cut(s) 223, 232, 436, 747, 988
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 3 cut(s) 293, 710, 1143
SduI GDGCHC 4 cut(s) 15, 31, 1032, 1052
SfaNI GCATC 3 cut(s) 532, 562, 1402
SmlI CTYRAG 1 cut(s) 1502
SmoI CTYRAG 1 cut(s) 1502
SspMI CTAG 6 cut(s) 408, 459, 566, 1193, 1287, 1481
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 3 cut(s) 291, 708, 1141
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 1 cut(s) 1162
TaqI TCGA 1 cut(s) 540
TatI WGTACW 1 cut(s) 651
TfiI GAWTC 4 cut(s) 160, 261, 809, 941
Tru1I TTAA 4 cut(s) 471, 587, 693, 1497
Tru9I TTAA 4 cut(s) 471, 587, 693, 1497
TscAI CASTG 3 cut(s) 957, 1057, 1107
TseFI GTSAC 3 cut(s) 521, 980, 1458
TseI GCWGC 2 cut(s) 1067, 1117
Tsp45I GTSAC 3 cut(s) 521, 980, 1458
TspDTI ATGAA 5 cut(s) 611, 615, 743, 1089, 1250
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 3 cut(s) 957, 1057, 1107
Van91I CCANNNNNTGG 1 cut(s) 311
VneI GTGCAC 1 cut(s) 1048
XapI RAATTY 5 cut(s) 210, 339, 582, 837, 1084
XceI RCATGY 2 cut(s) 370, 652
XmiI GTMKAC 1 cut(s) 735
XmnI GAANNNNTTC 1 cut(s) 503
XspI CTAG 6 cut(s) 408, 459, 566, 1193, 1287, 1481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.