Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011367

Physical Location & Seq

Genomic Coordinates Forward (+)

46740980 .. 46743806

Gene Structure 2827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003290

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2385 bp

ATGAGCCGGCCCGGCCCGACCCTTTTCGGGAGACTCGACAACAAACCAAAACTCACACGGTCTCCATCTCTAAAACCCCAAAAAATCCTCACCGCCACCACTTCAGTACCCACCACGCCGGCGACGCCCTTCAAAAACCGATCGCCGCTCCTCTATCTCACAAATGAACCCAACTCATCCTTCACTCAACCTCTGATTCTTCTCCCCCACATCCTCCCTTATCATTTTCTCGTAATCTTAGAGACCAAAATGAGTTTGAGGTACTTAGTTTCCAGGCAATCAGTGTCAAAAATCACTGCTGGGCTTCGGTCTCAGTATGCCGCTGCGTATGGTTTCGCAACCATTGCAGACCCAATACCCAGTTCATTTCGTTCTGCAACTCATCATGGTGGGTCTAAACCTCTCAAAAACCCTAGGTACCCAATACCCACGAGGTCGTTTAGTAGAGGCATTCACTCTGCTCAAGTGGTTGATTCGGTGGATTCCGAGGAGGAGGAGGAAGATGGAGGCATTAATGAGTTTTTGTCCCGATTCGTGTGGATTATACGGCAGAAGCTCAATGTGGCTTACCCGGGTTGCGATAAGGAAACTGTGGATGGGATGCTGATGGTTATTGTGCAGAGGGTTGTGGAGGAGATGGAGCAGGGCGGGTTTGAGCAGATGCTTGGCGAAAGGCAGGGTGCTGCTGCTACGTCGCAGGATTTTAGTGAGGATTTGTGGAGAACAGTGTGGGAGGTGAGCAATATGGTTTTGGATGACATGAGGAAGGAAGCGAGGAAGGAGAAAATGAAGGGGTTTCTGCATGCTGAGGAAGTCAAGGAGATGTGTAGGTTTGCTGGTGAAGTTGGTATCCGGGGGGATATGCTTAGAGAGCTCAGGTTCAAGTGGGCTCGCGAGAAGATGGAGGAGACTGAGTTTTATGAGAGTTTGGAGCTTCTTAGAGAACAAGAGAAAGCCCAAGAGAGAGGGGAGGAGGAAGGAGAGGTTGTGCAAGATGAGGAGGCTGGTGTAACTGAGGTGAATCCTAAGGTTGGTTCTCTTCCCAAGAGGCGAGGGAAGATAAGGTACAAAATTTATGGTCTTGATCTCTCTGATCCGAAGTGGGTTGAAGTTGTTGATAGAATCCATGAGGCAGGGGAGGTCATTTGTCCCCAGGAACCGAAACCAATATCTGGGAAATGCAAGTTGGTTACTGAGAGAATTCTTCAATCAAATGAGGCAGATGACATGTCTCCACTTTTGGCTGAATGGGTAGAGTTGCTCCAACCTAGTAGGATTGATTGGGACAATTTGCTTGATCAATTGAAAGAGCAGAACACCAGATTATACTTTAAGGTGGCAGAACTTGTATTGGATGAGAAATCTTTCCAGACAAACATCCGTGACTACTCCATGCTTATCGATGCTTATGCCAAGGAAAATAACCTAGAAGATGCTGAGAGAATTTTAAAGAAGATGAATGAAAATGGGTTTGAACCTGATATCTTAACAACCACTATTTTGGTTCACATGTACAGCAAGGCAGGCAATCTTGAAGGTGCCGACCAAGCATTTAAGACATTGAAGAGCCAGGGCTTCCGACCAGATATGAAGGTCTACAATTCCATGATCAAGGCATATGTAAATGCTAACCAACCAAAATTGGGGGAGTCATTGATGAGAGAGATGGAATCAAGAGACATCAAACCCACAAAAGAAATTTACATGGCATTGCTTCAATCATTTGCCCAACTTGGTGATGTGAAAGGAGCGGAACGAATTGTCAACACTATGATTATGGCAGGTTTTCAGCCAACTTTAGAATCTTGTTCAGTGCTTGTTGAGGCATATGGAAAAGCTGGTGACCCTGATCAGGCAAGGCACAACTTTGATTACATAATAAAAGTTGGGCACAAACCTGACGACAAGTGCACTGCTAGCATGATTGCAGCTTATGAAAAGAAGAATTTACTCGATAAGGCACTGGATTTGTTGCTGCAGCTTGAAAAGGATGGCGTTGAGCCGGGAGTTGCTACTTACACAGTTCTTGTAGATTGGCTGGGAAAACTGCAGCTAGTTAGTGAGGCCGAACAGCTATTGGACAAAATTGCTGAGCTGGGTGAGGCTCCTCCATTGCAACTTCATGTAAGCATTTGCGATATGTATGCTAGGGCTGGATTTGAGAAAAAGGCACTACAAGCTTTGGGAGTTTTGGAGGCTAAGAAGGAGCAACTGAGTTTAGATGACTTTGAGACAATTATCGAGGGGCTTATGGCGGGTGGATTTTTTCAGGATGCTCAGAGGATACGGGGAGTGATGGAGGCTCAGGGTTTTGTTGTGTCACAGCGACTTCAGTTGCACCTAGTGACTAAAAGTTTTAACCTCAAGAGGCCATCAATGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

795

Amino Acids

89.85

Weight (kDa)

5.49

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	450 - 545	5e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	452 - 497	1.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	463 - 507	1.4e-09	PPR repeat family
PPR_long	PF17177	470 - 606	5.7e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	481 - 542	1.1e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	528 - 564	7e-06	PPR repeat family
PPR_3	PF13812	551 - 612	1.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	640 - 681	3.7e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19520 AT1G19520
fragaria_vesca	FvH4_6g24430
malus_domestica	MD03G1139500.v1.1 MD11G1162300.v1.1
prunus_persica	Prupe.6G124500_v2.0.a1
pyrus_communis	pycom03g09450 pycom11g13170
rosa_chinensis	RchiOBHm_Chr7g0207751
rosa_laevigata	RLG00000003290
rosa_multiflora	Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012
rosa_roxburghii	Rroxscaffold_3G00251180
rosa_rugosa	Rorug07G0099500 Rorug07G0099600
rosa_samantha	Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800
rosa_wichuraiana	Rw7G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1772
Acc65I	GGTACC	1 cut(s)	417
AccB1I	GGYRCC	2 cut(s)	417, 1538
AccB7I	CCANNNNNTGG	1 cut(s)	1172
AccBSI	CCGCTC	2 cut(s)	148, 1751
AccI	GTMKAC	1 cut(s)	1596
AccII	CGCG	1 cut(s)	894
AciI	CCGC	6 cut(s)	93, 146, 321, 648, 1751, 2255
AclWI	GGATC	1 cut(s)	1088
AcsI	RAATTY	5 cut(s)	1071, 1200, 1443, 1698, 1945
AcuI	CTGAAG	2 cut(s)	87, 2315
AcyI	GRCGYC	1 cut(s)	125
AdeI	CACNNNGTG	1 cut(s)	2344
AfaI	GTAC	5 cut(s)	108, 263, 419, 1067, 1514
AfiI	CCNNNNNNNGG	5 cut(s)	27, 1031, 1172, 1643, 1852
AflIII	ACRYGT	2 cut(s)	1227, 1509
AjnI	CCWGG	3 cut(s)	272, 1152, 1569
AjuI	GAANNNNNNNTTGG	6 cut(s)	164, 196, 346, 378, 1169, 1201
Alw21I	GWGCWC	2 cut(s)	876, 1913
Alw26I	GTCTC	8 cut(s)	25, 66, 236, 315, 902, 1236, 1671, 2225
Alw44I	GTGCAC	1 cut(s)	1909
AlwI	GGATC	1 cut(s)	1088
Ama87I	CYCGRG	1 cut(s)	571
AoxI	GGCC	4 cut(s)	8, 13, 2064, 2369
ApaLI	GTGCAC	1 cut(s)	1909
ApeKI	GCWGC	7 cut(s)	323, 683, 686, 1928, 1975, 1978, 2050
ApoI	RAATTY	5 cut(s)	1071, 1200, 1443, 1698, 1945
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	1364
Asp718I	GGTACC	1 cut(s)	417
AspA2I	CCTAGG	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	9, 14
AsuC2I	CCSGG	5 cut(s)	12, 572, 573, 854, 2004
AsuHPI	GGTGA	7 cut(s)	82, 748, 851, 1030, 1748, 1853, 2111
AsuNHI	GCTAGC	1 cut(s)	1916
AvaI	CYCGRG	1 cut(s)	571
AvrII	CCTAGG	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	1026
BaeGI	GKGCMC	2 cut(s)	1893, 1913
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BanI	GGYRCC	2 cut(s)	417, 1538
BanII	GRGCYC	2 cut(s)	876, 892
BarI	GAAGNNNNNNTAC	2 cut(s)	1049, 1081
BauI	CACGAG	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	876, 1913
BbvCI	CCTCAGC	1 cut(s)	807
BbvI	GCAGC	7 cut(s)	310, 670, 673, 1940, 1962, 1990, 2062
BceAI	ACGGC	1 cut(s)	563
BcgI	CGANNNNNNTGC	4 cut(s)	1391, 1425, 2126, 2160
BciT130I	CCWGG	3 cut(s)	274, 1154, 1571
BciVI	GTATCC	2 cut(s)	860, 2277
BclI	TGATCA	3 cut(s)	1297, 1608, 1849
BcnI	CCSGG	5 cut(s)	12, 572, 573, 854, 2004
BcoDI	GTCTC	8 cut(s)	25, 66, 236, 315, 902, 1236, 1671, 2225
BfaI	CTAG	7 cut(s)	414, 1269, 1427, 1917, 2054, 2148, 2342
BfmI	CTRYAG	2 cut(s)	1976, 2048
BfuAI	ACCTGC	1 cut(s)	1772
BfuI	GTATCC	2 cut(s)	860, 2277
BglI	GCCNNNNNGGC	1 cut(s)	12
BisI	GCNGC	9 cut(s)	146, 321, 324, 684, 687, 1929, 1976, 1979, 2051
BlnI	CCTAGG	1 cut(s)	413
BlpI	GCTNAGC	1 cut(s)	2091
BlsI	GCNGC	9 cut(s)	147, 322, 325, 685, 688, 1930, 1977, 1980, 2052
Bme1390I	CCNGG	8 cut(s)	12, 274, 572, 573, 854, 1154, 1571, 2004
BmeT110I	CYCGRG	1 cut(s)	571
BmgT120I	GGNCC	2 cut(s)	9, 14
BmiI	GGNNCC	4 cut(s)	419, 1158, 1540, 2106
BmrFI	CCNGG	8 cut(s)	12, 274, 572, 573, 854, 1154, 1571, 2004
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	5 cut(s)	591, 651, 1393, 1423, 2263
BmtI	GCTAGC	1 cut(s)	1920
BmuI	ACTGGG	1 cut(s)	354
Bpu10I	CCTNAGC	3 cut(s)	807, 875, 2304
Bpu1102I	GCTNAGC	1 cut(s)	2091
BpuEI	CTTGAG	2 cut(s)	447, 2348
BpuMI	CCSGG	5 cut(s)	12, 572, 573, 854, 2004
Bsa29I	ATCGAT	1 cut(s)	1401
BsaHI	GRCGYC	1 cut(s)	125
BsaI	GGTCTC	3 cut(s)	66, 236, 315
BsaJI	CCNNGG	7 cut(s)	413, 486, 571, 853, 1152, 1413, 1570
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 899, 929, 972, 1002
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 1031, 1172, 1643, 1852
Bse118I	RCCGGY	2 cut(s)	6, 118
Bse1I	ACTGG	2 cut(s)	360, 1968
Bse21I	CCTNAGG	1 cut(s)	1026
Bse3DI	GCAATG	3 cut(s)	342, 1709, 2111
BseBI	CCWGG	3 cut(s)	274, 1154, 1571
BseCI	ATCGAT	1 cut(s)	1401
BseDI	CCNNGG	7 cut(s)	413, 486, 571, 853, 1152, 1413, 1570
BseGI	GGATG	9 cut(s)	176, 210, 601, 606, 760, 1360, 1377, 1996, 2278
BseLI	CCNNNNNNNGG	5 cut(s)	27, 1031, 1172, 1643, 1852
BseMI	GCAATG	3 cut(s)	342, 1709, 2111
BseNI	ACTGG	2 cut(s)	360, 1968
BseRI	GAGGAG	9 cut(s)	140, 503, 506, 509, 647, 920, 986, 1013, 2097
BseSI	GKGCMC	2 cut(s)	1893, 1913
BseXI	GCAGC	7 cut(s)	310, 670, 673, 1940, 1962, 1990, 2062
BseYI	CCCAGC	3 cut(s)	299, 2038, 2095
BsgI	GTGCAG	1 cut(s)	638
Bsh1236I	CGCG	1 cut(s)	894
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	4 cut(s)	10, 15, 2066, 2371
BshNI	GGYRCC	2 cut(s)	417, 1538
BshVI	ATCGAT	1 cut(s)	1401
BsiEI	CGRYCG	1 cut(s)	143
BsiHKAI	GWGCWC	2 cut(s)	876, 1913
BsiHKCI	CYCGRG	1 cut(s)	571
BsiSI	CCGG	6 cut(s)	7, 12, 119, 572, 853, 2003
BslFI	GGGAC	3 cut(s)	511, 1134, 1298
BslI	CCNNNNNNNGG	5 cut(s)	27, 1031, 1172, 1643, 1852
BsmAI	GTCTC	8 cut(s)	25, 66, 236, 315, 902, 1236, 1671, 2225
BsmFI	GGGAC	3 cut(s)	511, 1134, 1298
BsmI	GAATGC	1 cut(s)	450
BsnI	GGCC	4 cut(s)	10, 15, 2066, 2371
Bso31I	GGTCTC	3 cut(s)	66, 236, 315
BsoBI	CYCGRG	1 cut(s)	571
Bsp1286I	GDGCHC	4 cut(s)	876, 892, 1893, 1913
Bsp1407I	TGTACA	1 cut(s)	1512
Bsp143I	GATC	6 cut(s)	140, 1084, 1093, 1297, 1608, 1849
Bsp1720I	GCTNAGC	1 cut(s)	2091
Bsp68I	TCGCGA	1 cut(s)	894
BspACI	CCGC	6 cut(s)	93, 146, 321, 648, 1751, 2255
BspANI	GGCC	4 cut(s)	10, 15, 2066, 2371
BspDI	ATCGAT	1 cut(s)	1401
BspFNI	CGCG	1 cut(s)	894
BspLI	GGNNCC	4 cut(s)	419, 1158, 1540, 2106
BspMAI	CTGCAG	2 cut(s)	1980, 2052
BspMI	ACCTGC	1 cut(s)	1772
BspOI	GCTAGC	1 cut(s)	1920
BspPI	GGATC	1 cut(s)	1088
BspQI	GCTCTTC	1 cut(s)	1559
BspT107I	GGYRCC	2 cut(s)	417, 1538
BspTNI	GGTCTC	3 cut(s)	66, 236, 315
BsrBI	CCGCTC	2 cut(s)	148, 1751
BsrDI	GCAATG	3 cut(s)	342, 1709, 2111
BsrFI	RCCGGY	2 cut(s)	6, 118
BsrGI	TGTACA	1 cut(s)	1512
BsrI	ACTGG	2 cut(s)	360, 1968
BssAI	RCCGGY	2 cut(s)	6, 118
BssECI	CCNNGG	7 cut(s)	413, 486, 571, 853, 1152, 1413, 1570
BssMI	GATC	6 cut(s)	140, 1084, 1093, 1297, 1608, 1849
BssNI	GRCGYC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	430
BssT1I	CCWWGG	2 cut(s)	413, 1413
Bst2BI	CACGAG	1 cut(s)	430
Bst2UI	CCWGG	3 cut(s)	274, 1154, 1571
Bst4CI	ACNGT	4 cut(s)	60, 592, 727, 2023
Bst6I	CTCTTC	2 cut(s)	1044, 1559
BstACI	GRCGYC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	1512
BstC8I	GCNNGC	6 cut(s)	8, 120, 804, 892, 1525, 1918
BstEII	GGTNACC	1 cut(s)	1841
BstF5I	GGATG	9 cut(s)	176, 210, 601, 606, 760, 1360, 1377, 1996, 2278
BstFNI	CGCG	1 cut(s)	894
BstKTI	GATC	6 cut(s)	143, 1087, 1096, 1300, 1611, 1852
BstMAI	GTCTC	8 cut(s)	25, 66, 236, 315, 902, 1236, 1671, 2225
BstMBI	GATC	6 cut(s)	140, 1084, 1093, 1297, 1608, 1849
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	8 cut(s)	12, 124, 344, 871, 1524, 1547, 1917, 2177
BstNI	CCWGG	3 cut(s)	274, 1154, 1571
BstNSI	RCATGY	3 cut(s)	806, 1231, 1513
BstPI	GGTNACC	1 cut(s)	1841
BstSCI	CCNGG	8 cut(s)	10, 272, 570, 571, 852, 1152, 1569, 2002
BstSFI	CTRYAG	2 cut(s)	1976, 2048
BstSLI	GKGCMC	2 cut(s)	1893, 1913
BstUI	CGCG	1 cut(s)	894
BstV1I	GCAGC	7 cut(s)	310, 670, 673, 1940, 1962, 1990, 2062
BstXI	CCANNNNNNTGG	1 cut(s)	1501
Bsu15I	ATCGAT	1 cut(s)	1401
Bsu36I	CCTNAGG	1 cut(s)	1026
BsuI	GTATCC	2 cut(s)	860, 2277
BsuRI	GGCC	4 cut(s)	10, 15, 2066, 2371
BsuTUI	ATCGAT	1 cut(s)	1401
BtsCI	GGATG	9 cut(s)	176, 210, 601, 606, 760, 1360, 1377, 1996, 2278
BtsI	GCAGTG	2 cut(s)	294, 1911
BtsIMutI	CAGTG	6 cut(s)	288, 294, 732, 1818, 1911, 1961
BtuMI	TCGCGA	1 cut(s)	894
BveI	ACCTGC	1 cut(s)	1772
Cac8I	GCNNGC	6 cut(s)	8, 120, 804, 892, 1525, 1918
Cfr10I	RCCGGY	2 cut(s)	6, 118
Cfr13I	GGNCC	2 cut(s)	9, 14
Cfr9I	CCCGGG	1 cut(s)	571
ClaI	ATCGAT	1 cut(s)	1401
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	5 cut(s)	107, 262, 418, 1066, 1513
CviQI	GTAC	5 cut(s)	107, 262, 418, 1066, 1513
DpnI	GATC	6 cut(s)	142, 1086, 1095, 1299, 1610, 1851
DpnII	GATC	6 cut(s)	140, 1084, 1093, 1297, 1608, 1849
DraI	TTTAAA	1 cut(s)	1449
DraIII	CACNNNGTG	1 cut(s)	2344
Eam1104I	CTCTTC	2 cut(s)	1044, 1559
EarI	CTCTTC	2 cut(s)	1044, 1559
Ecl136II	GAGCTC	1 cut(s)	874
Eco130I	CCWWGG	2 cut(s)	413, 1413
Eco24I	GRGCYC	2 cut(s)	876, 892
Eco31I	GGTCTC	3 cut(s)	66, 236, 315
Eco32I	GATATC	1 cut(s)	1483
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	2 cut(s)	87, 2315
Eco81I	CCTNAGG	1 cut(s)	1026
Eco88I	CYCGRG	1 cut(s)	571
Eco91I	GGTNACC	1 cut(s)	1841
EcoICRI	GAGCTC	1 cut(s)	874
EcoO65I	GGTNACC	1 cut(s)	1841
EcoRI	GAATTC	1 cut(s)	1200
EcoRII	CCWGG	3 cut(s)	272, 1152, 1569
EcoRV	GATATC	1 cut(s)	1483
EcoT14I	CCWWGG	2 cut(s)	413, 1413
EcoT38I	GRGCYC	2 cut(s)	876, 892
ErhI	CCWWGG	2 cut(s)	413, 1413
FaqI	GGGAC	3 cut(s)	511, 1134, 1298
FauI	CCCGC	2 cut(s)	641, 2248
FauNDI	CATATG	2 cut(s)	1618, 1828
FbaI	TGATCA	3 cut(s)	1297, 1608, 1849
FblI	GTMKAC	1 cut(s)	1596
Fnu4HI	GCNGC	9 cut(s)	146, 321, 324, 684, 687, 1929, 1976, 1979, 2051
FokI	GGATG	9 cut(s)	163, 197, 608, 613, 767, 1364, 1367, 2003, 2285
FriOI	GRGCYC	2 cut(s)	876, 892
Fsp4HI	GCNGC	9 cut(s)	146, 321, 324, 684, 687, 1929, 1976, 1979, 2051
FspBI	CTAG	7 cut(s)	414, 1269, 1427, 1917, 2054, 2148, 2342
GluI	GCNGC	9 cut(s)	146, 321, 324, 684, 687, 1929, 1976, 1979, 2051
GsaI	CCCAGC	3 cut(s)	303, 2042, 2099
HaeIII	GGCC	4 cut(s)	10, 15, 2066, 2371
HapII	CCGG	6 cut(s)	7, 12, 119, 572, 853, 2003
HgaI	GACGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	1765
HindII	GTYRAC	1 cut(s)	1765
HindIII	AAGCTT	1 cut(s)	2178
HpaII	CCGG	6 cut(s)	7, 12, 119, 572, 853, 2003
HphI	GGTGA	7 cut(s)	82, 748, 851, 1030, 1748, 1853, 2111
Hpy166II	GTNNAC	4 cut(s)	1507, 1597, 1765, 1911
Hpy188I	TCNGA	6 cut(s)	195, 487, 1093, 1098, 1580, 2280
Hpy188III	TCNNGA	9 cut(s)	28, 528, 893, 1082, 1369, 1532, 1674, 2270, 2365
Hpy8I	GTNNAC	4 cut(s)	1507, 1597, 1765, 1911
Hpy99I	CGWCG	2 cut(s)	127, 697
HpyAV	CCTTC	9 cut(s)	139, 190, 760, 772, 784, 971, 1529, 1585, 2197
HpyCH4III	ACNGT	4 cut(s)	60, 592, 727, 2023
HpyCH4IV	ACGT	1 cut(s)	692
HpyF10VI	GCNNNNNNNGC	8 cut(s)	12, 124, 344, 871, 1524, 1547, 1917, 2177
HpySE526I	ACGT	1 cut(s)	692
Hsp92I	GRCGYC	1 cut(s)	125
KpnI	GGTACC	1 cut(s)	421
KroI	GCCGGC	2 cut(s)	6, 118
KroNI	GCCGGC	2 cut(s)	8, 120
Ksp22I	TGATCA	3 cut(s)	1297, 1608, 1849
Kzo9I	GATC	6 cut(s)	140, 1084, 1093, 1297, 1608, 1849
LguI	GCTCTTC	1 cut(s)	1559
LmnI	GCTCC	7 cut(s)	153, 640, 931, 1266, 1748, 2110, 2206
Lsp1109I	GCAGC	7 cut(s)	310, 670, 673, 1940, 1962, 1990, 2062
LweI	GCATC	5 cut(s)	591, 651, 1393, 1423, 2263
MaeI	CTAG	7 cut(s)	414, 1269, 1427, 1917, 2054, 2148, 2342
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	6 cut(s)	1009, 1189, 1382, 1841, 2319, 2344
MalI	GATC	6 cut(s)	142, 1086, 1095, 1299, 1610, 1851
MbiI	CCGCTC	2 cut(s)	148, 1751
MboI	GATC	6 cut(s)	140, 1084, 1093, 1297, 1608, 1849
MfeI	CAATTG	1 cut(s)	1301
MhlI	GDGCHC	4 cut(s)	876, 892, 1893, 1913
MlyI	GAGTC	2 cut(s)	27, 1658
MmeI	TCCRAC	2 cut(s)	1288, 1603
MreI	CGCCGGCG	1 cut(s)	118
MroNI	GCCGGC	2 cut(s)	6, 118
MroXI	GAANNNNTTC	1 cut(s)	1364
MseI	TTAA	6 cut(s)	513, 1332, 1448, 1487, 1554, 2358
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	6 cut(s)	7, 12, 119, 572, 853, 2003
MspR9I	CCNGG	8 cut(s)	12, 274, 572, 573, 854, 1154, 1571, 2004
MunI	CAATTG	1 cut(s)	1301
Mva1269I	GAATGC	1 cut(s)	450
MvaI	CCWGG	3 cut(s)	274, 1154, 1571
MvnI	CGCG	1 cut(s)	894
MwoI	GCNNNNNNNGC	8 cut(s)	12, 124, 344, 871, 1524, 1547, 1917, 2177
NaeI	GCCGGC	2 cut(s)	8, 120
NciI	CCSGG	5 cut(s)	12, 572, 573, 854, 2004
NdeI	CATATG	2 cut(s)	1618, 1828
NdeII	GATC	6 cut(s)	140, 1084, 1093, 1297, 1608, 1849
NgoMIV	GCCGGC	2 cut(s)	6, 118
NheI	GCTAGC	1 cut(s)	1916
NlaIV	GGNNCC	4 cut(s)	419, 1158, 1540, 2106
NmuCI	GTSAC	4 cut(s)	1382, 1841, 2319, 2344
NruI	TCGCGA	1 cut(s)	894
NspI	RCATGY	3 cut(s)	806, 1231, 1513
PaeI	GCATGC	1 cut(s)	806
PciI	ACATGT	2 cut(s)	1227, 1509
PciSI	GCTCTTC	1 cut(s)	1559
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	450
PdiI	GCCGGC	2 cut(s)	8, 120
PdmI	GAANNNNTTC	1 cut(s)	1364
PfeI	GAWTC	8 cut(s)	196, 473, 482, 531, 1021, 1122, 1670, 1802
PflMI	CCANNNNNTGG	1 cut(s)	1172
PkrI	GCNGC	9 cut(s)	147, 322, 325, 685, 688, 1930, 1977, 1980, 2052
Ple19I	CGATCG	1 cut(s)	143
PleI	GAGTC	2 cut(s)	27, 1657
PpsI	GAGTC	2 cut(s)	27, 1657
PscI	ACATGT	2 cut(s)	1227, 1509
PshBI	ATTAAT	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	876
Psp6I	CCWGG	3 cut(s)	272, 1152, 1569
PspEI	GGTNACC	1 cut(s)	1841
PspFI	CCCAGC	3 cut(s)	299, 2038, 2095
PspGI	CCWGG	3 cut(s)	272, 1152, 1569
PspN4I	GGNNCC	4 cut(s)	419, 1158, 1540, 2106
PspPI	GGNCC	2 cut(s)	9, 14
PstI	CTGCAG	2 cut(s)	1980, 2052
PvuI	CGATCG	1 cut(s)	143
RruI	TCGCGA	1 cut(s)	894
RsaI	GTAC	5 cut(s)	108, 263, 419, 1067, 1514
RsaNI	GTAC	5 cut(s)	107, 262, 418, 1066, 1513
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	876
SapI	GCTCTTC	1 cut(s)	1559
SaqAI	TTAA	6 cut(s)	513, 1332, 1448, 1487, 1554, 2358
SatI	GCNGC	9 cut(s)	146, 321, 324, 684, 687, 1929, 1976, 1979, 2051
Sau3AI	GATC	6 cut(s)	140, 1084, 1093, 1297, 1608, 1849
Sau96I	GGNCC	2 cut(s)	9, 14
SchI	GAGTC	2 cut(s)	27, 1658
ScrFI	CCNGG	8 cut(s)	12, 274, 572, 573, 854, 1154, 1571, 2004
SduI	GDGCHC	4 cut(s)	876, 892, 1893, 1913
SfaNI	GCATC	5 cut(s)	591, 651, 1393, 1423, 2263
SfcI	CTRYAG	2 cut(s)	1976, 2048
SgrAI	CRCCGGYG	1 cut(s)	118
SmaI	CCCGGG	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	462, 2363
SmoI	CTYRAG	2 cut(s)	462, 2363
SphI	GCATGC	1 cut(s)	806
SsiI	CCGC	6 cut(s)	93, 146, 321, 648, 1751, 2255
SspMI	CTAG	7 cut(s)	414, 1269, 1427, 1917, 2054, 2148, 2342
SstI	GAGCTC	1 cut(s)	876
StyD4I	CCNGG	8 cut(s)	10, 272, 570, 571, 852, 1152, 1569, 2002
StyI	CCWWGG	2 cut(s)	413, 1413
TaaI	ACNGT	4 cut(s)	60, 592, 727, 2023
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	4 cut(s)	36, 1401, 1953, 2241
TaqII	GACCGA	1 cut(s)	297
TatI	WGTACW	1 cut(s)	1512
TauI	GCSGC	2 cut(s)	148, 323
TfiI	GAWTC	8 cut(s)	196, 473, 482, 531, 1021, 1122, 1670, 1802
Tru1I	TTAA	6 cut(s)	513, 1332, 1448, 1487, 1554, 2358
Tru9I	TTAA	6 cut(s)	513, 1332, 1448, 1487, 1554, 2358
TscAI	CASTG	6 cut(s)	288, 301, 732, 1818, 1918, 1968
TseFI	GTSAC	4 cut(s)	1382, 1841, 2319, 2344
TseI	GCWGC	7 cut(s)	323, 683, 686, 1928, 1975, 1978, 2050
Tsp45I	GTSAC	4 cut(s)	1382, 1841, 2319, 2344
TspDTI	ATGAA	8 cut(s)	180, 354, 803, 1472, 1476, 1604, 1950, 2111
TspGWI	ACGGA	1 cut(s)	1370
TspMI	CCCGGG	1 cut(s)	571
TspRI	CASTG	6 cut(s)	288, 301, 732, 1818, 1918, 1968
Van91I	CCANNNNNTGG	1 cut(s)	1172
VneI	GTGCAC	1 cut(s)	1909
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	5 cut(s)	1071, 1200, 1443, 1698, 1945
XceI	RCATGY	3 cut(s)	806, 1231, 1513
XmaI	CCCGGG	1 cut(s)	571
XmaJI	CCTAGG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	1596
XmnI	GAANNNNTTC	1 cut(s)	1364
XspI	CTAG	7 cut(s)	414, 1269, 1427, 1917, 2054, 2148, 2342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.