Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011367

Physical Location & Seq

Genomic Coordinates Reverse (-)

24993412 .. 24996410

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18592

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGAGTTTGAGGTACTTAGTTTCCAGGCAATCAGTGTCAAAAATCACTGCTAGGCTTAGGTCTCAGTATGCCGCTGCGTATGGTTTCGCAACCATTGCAGACCCAATACCCAGTTCATTTCGTTCTGCAACTCATCATGGTGCGTCTAAACCTCTCAAAAACCCTAGGTACCCAATACCCATGAGGTCGTTTAGTAGAGGTATTCACTCTGCTCAAGTGGTTGATTCGGTGGATTCGGAGGAGGAGGAGGAAGAAGATGGAGGCATTAATGATTTCTTGTCCCGATTCGTGTGGATTATACGGCAGAAGCTCAATGTGGCTTACCCGGGTTGCGACAAGGAAACTGTTGATGGGATGCTGATGGTTATTGTGCAGAGGGTTGTGGAGGAGATGGAGCAGGGCGGGTTTGAGCAGATGCTTGGCGAAAGGCAGGGTGCTGCTCCGTCGCAGGATTTTAGTGAGGATTTGTGGAGAACAGTGTGGGAGGTGAGCAATATGGTTTTGGATGACATGAGGAAGGAAGCGAGGAAGGAGAAAATGAAGGGGTTTCTGCATGCTGAGGAAGTCAAGGAGATGTGTAGGTTTGCTGGTGAAGTTGGTATCCGAGGGGATATGCTTAGGGAGCTCAGGTTCAAGTGGGCTCGCGAGAAGATGGAGGAGACTGAGTTTTATGAGAGCTTGGAGCTTCTTAGAGAACAAGAGAAAGCCCAAGAGAAAGGGGAGGAGGAAGGAGAGGTTGTGCAAGCTGAGGAGGATGGTGTAACTGAGGTGAATCCTAAGGATGGTTCTCTTCCCAAGAGGCGAGGGAAGATAAGGTACAAAATTTATGGTCTTGATCTCTCTGATCCGAAGTGGGTTGAAGTTGTTGATAGAATCCATGAGGCAGGGGAGGTCATTTGTCCCCAGGAACCGAAACCAATATCTGGGAAATGCAAGTTGGTTACTGAGAGAATTCTTCAATCAAATGAGGCAGATGACATGTCTCCACTTTTGGCTGAATGGGTAGAGTTGCTCCAACCTAGTAGGATTGATTGGGACAATTTGCTTGATCAATTGAAAGAGCAGAACACCAGGTTATACTTTAAGGTGGCAGAACTTGTATTGGATGAGAAATCTTTGCAGACGAATATCCGTGACTACTCCATGCTTATCGATGCTTATGCCAAGGAAAATAACCTAGAAGATGCTGAGAGAATTTTAAAGAAGATGAATGAAAATGGGTTTGAACCTGATATCTTCACAACCACTATTTTGGTTCACATGTACAGCAAGGCAGGCAATCTTGAAGGTGCCGACCAAGCATTTAAGACATTGAAGAGCCAGGGCTTCCGACCAGATATGAAGGTCTACAATTCCATGATCAAGGCATATGTAAATGCTAACCAACCAAAATTGGGGGAGTCATTGATGAGAGAGATGGAATCAAGAGACATCAAACCCTCAAAACAAATTTACATGGCATTGCTTCAATCATTTGCCCAACTTGGTGATGTGAAGGGAGCAGAACGAATTGTCAACACTATGATTATGGCAGGTTTTCAGCCAACTTTAGAATCTTGTTCAGTGCTTGTTGAGGCATATGGAAAAGCTGGTGACCCTGATCAGGCAAGGCACAACTTTGATTACATAATAAAAGTTGGGCACAAACCCGACGACAAGTGCACTGCGAGCATGATTGCAGCTTATGAAAAGAAGAATTTACTCGATAAGGCACTGGATTTGTTGTTGCAGCTTGAAAAGGATGGCTTTGAGCCGGGAGTTGCTACTTACACAGTTCTTGTAGATTGGCTGGGAAAACTGGAGCTAGTTAGTGAGGCTGAACAGCTATTGGACAAAATTGCTGAGCTGGGTGAGGCTCCTCCATTGCAACTTCATGTAAGCATTTGCGATATGTATGCTAGGGCTCGATTTGAGAAAAAGGCACTACAAGCTTTGGGAGTTTTGGAGGCCAAGAAGGAGCAACTGAGTTTAGATGACTTTGAGACAATTATCAAGGGGCTTATGGCTGGTGGATTTTTTCAGGATGCTCAGAGGATACGGGGAGTGATGGAGGCTCAGGGTTTTGTTGCGTCACAGCAACTTCAGTTGCACCTAGTGGCTAAAAGTTTAACCTCAAGAGGCCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

709

Amino Acids

80.44

Weight (kDa)

5.15

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	367 - 461	7.6e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	369 - 414	2.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	380 - 424	3.2e-10	PPR repeat family
PPR_long	PF17177	388 - 497	5.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	398 - 459	8.9e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	445 - 482	4.9e-06	PPR repeat family
PPR_3	PF13812	468 - 529	1.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	557 - 598	7.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19520 AT1G19520
fragaria_vesca	FvH4_6g24430
malus_domestica	MD03G1139500.v1.1 MD11G1162300.v1.1
prunus_persica	Prupe.6G124500_v2.0.a1
pyrus_communis	pycom03g09450 pycom11g13170
rosa_chinensis	RchiOBHm_Chr7g0207751
rosa_laevigata	RLG00000003290
rosa_multiflora	Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012
rosa_roxburghii	Rroxscaffold_3G00251180
rosa_rugosa	Rorug07G0099500 Rorug07G0099600
rosa_samantha	Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800
rosa_wichuraiana	Rw7G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1523
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	2 cut(s)	168, 1289
AccB7I	CCANNNNNTGG	1 cut(s)	923
AccI	GTMKAC	1 cut(s)	1347
AccII	CGCG	1 cut(s)	645
AciI	CCGC	2 cut(s)	72, 402
AclWI	GGATC	1 cut(s)	839
AcsI	RAATTY	5 cut(s)	822, 951, 1194, 1449, 1696
AcuI	CTGAAG	1 cut(s)	2066
AdeI	CACNNNGTG	1 cut(s)	2095
AfaI	GTAC	4 cut(s)	14, 170, 818, 1265
AfiI	CCNNNNNNNGG	4 cut(s)	782, 923, 1394, 1603
AflIII	ACRYGT	2 cut(s)	978, 1260
AgsI	TTSAA	9 cut(s)	634, 860, 959, 1057, 1226, 1286, 1315, 1469, 1736
AjnI	CCWGG	4 cut(s)	23, 903, 1070, 1320
AjuI	GAANNNNNNNTTGG	4 cut(s)	97, 129, 920, 952
AloI	GAACNNNNNNTCC	2 cut(s)	614, 646
Alw21I	GWGCWC	2 cut(s)	627, 1664
Alw26I	GTCTC	5 cut(s)	66, 653, 987, 1422, 1976
Alw44I	GTGCAC	1 cut(s)	1660
AlwI	GGATC	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	2 cut(s)	1947, 2119
ApaLI	GTGCAC	1 cut(s)	1660
ApeKI	GCWGC	4 cut(s)	74, 437, 1679, 1729
ApoI	RAATTY	5 cut(s)	822, 951, 1194, 1449, 1696
AseI	ATTAAT	1 cut(s)	267
Asp718I	GGTACC	1 cut(s)	168
AspA2I	CCTAGG	1 cut(s)	164
AsuC2I	CCSGG	3 cut(s)	326, 327, 1755
AsuHPI	GGTGA	6 cut(s)	499, 602, 781, 1499, 1604, 1862
AvaI	CYCGRG	1 cut(s)	325
AvrII	CCTAGG	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	777
BaeGI	GKGCMC	2 cut(s)	1644, 1664
BanI	GGYRCC	2 cut(s)	168, 1289
BanII	GRGCYC	3 cut(s)	627, 643, 1906
BarI	GAAGNNNNNNTAC	2 cut(s)	800, 832
Bbv12I	GWGCWC	2 cut(s)	627, 1664
BbvCI	CCTCAGC	2 cut(s)	558, 747
BbvI	GCAGC	4 cut(s)	61, 424, 1691, 1741
BceAI	ACGGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	4 cut(s)	1142, 1176, 1877, 1911
BciT130I	CCWGG	4 cut(s)	25, 905, 1072, 1322
BciVI	GTATCC	2 cut(s)	611, 2028
BclI	TGATCA	3 cut(s)	1048, 1359, 1600
BcnI	CCSGG	3 cut(s)	326, 327, 1755
BcoDI	GTCTC	5 cut(s)	66, 653, 987, 1422, 1976
BfaI	CTAG	7 cut(s)	51, 165, 1020, 1178, 1805, 1899, 2093
BfuAI	ACCTGC	1 cut(s)	1523
BfuI	GTATCC	2 cut(s)	611, 2028
BisI	GCNGC	5 cut(s)	72, 75, 438, 1680, 1730
BlnI	CCTAGG	1 cut(s)	164
BlpI	GCTNAGC	1 cut(s)	1842
BlsI	GCNGC	5 cut(s)	73, 76, 439, 1681, 1731
Bme1390I	CCNGG	7 cut(s)	25, 326, 327, 905, 1072, 1322, 1755
BmeT110I	CYCGRG	1 cut(s)	325
BmiI	GGNNCC	4 cut(s)	170, 909, 1291, 1857
BmrFI	CCNGG	7 cut(s)	25, 326, 327, 905, 1072, 1322, 1755
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	5 cut(s)	345, 405, 1144, 1174, 2014
BmuI	ACTGGG	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	1820
Bpu10I	CCTNAGC	6 cut(s)	56, 558, 617, 626, 747, 2055
Bpu1102I	GCTNAGC	1 cut(s)	1842
BpuEI	CTTGAG	2 cut(s)	198, 2098
BpuMI	CCSGG	3 cut(s)	326, 327, 1755
Bsa29I	ATCGAT	1 cut(s)	1152
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	6 cut(s)	164, 325, 604, 903, 1164, 1321
BsaXI	ACNNNNNCTCC	6 cut(s)	614, 644, 650, 680, 723, 753
Bsc4I	CCNNNNNNNGG	4 cut(s)	782, 923, 1394, 1603
Bse1I	ACTGG	3 cut(s)	111, 1719, 1803
Bse21I	CCTNAGG	1 cut(s)	777
Bse3DI	GCAATG	3 cut(s)	93, 1460, 1862
BseBI	CCWGG	4 cut(s)	25, 905, 1072, 1322
BseCI	ATCGAT	1 cut(s)	1152
BseDI	CCNNGG	6 cut(s)	164, 325, 604, 903, 1164, 1321
BseGI	GGATG	7 cut(s)	360, 511, 760, 787, 1111, 1747, 2029
BseLI	CCNNNNNNNGG	4 cut(s)	782, 923, 1394, 1603
BseMI	GCAATG	3 cut(s)	93, 1460, 1862
BseNI	ACTGG	3 cut(s)	111, 1719, 1803
BseRI	GAGGAG	8 cut(s)	254, 257, 260, 401, 671, 737, 764, 1848
BseSI	GKGCMC	2 cut(s)	1644, 1664
BseXI	GCAGC	4 cut(s)	61, 424, 1691, 1741
BseYI	CCCAGC	2 cut(s)	1789, 1846
BsgI	GTGCAG	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	2 cut(s)	1949, 2121
BshNI	GGYRCC	2 cut(s)	168, 1289
BshVI	ATCGAT	1 cut(s)	1152
BsiHKAI	GWGCWC	2 cut(s)	627, 1664
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	326, 1754
BslFI	GGGAC	3 cut(s)	265, 885, 1049
BslI	CCNNNNNNNGG	4 cut(s)	782, 923, 1394, 1603
BsmAI	GTCTC	5 cut(s)	66, 653, 987, 1422, 1976
BsmFI	GGGAC	3 cut(s)	265, 885, 1049
BsnI	GGCC	2 cut(s)	1949, 2121
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	5 cut(s)	627, 643, 1644, 1664, 1906
Bsp1407I	TGTACA	1 cut(s)	1263
Bsp143I	GATC	5 cut(s)	835, 844, 1048, 1359, 1600
Bsp1720I	GCTNAGC	1 cut(s)	1842
Bsp68I	TCGCGA	1 cut(s)	645
BspACI	CCGC	2 cut(s)	72, 402
BspANI	GGCC	2 cut(s)	1949, 2121
BspDI	ATCGAT	1 cut(s)	1152
BspFNI	CGCG	1 cut(s)	645
BspLI	GGNNCC	4 cut(s)	170, 909, 1291, 1857
BspMI	ACCTGC	1 cut(s)	1523
BspPI	GGATC	1 cut(s)	839
BspQI	GCTCTTC	1 cut(s)	1310
BspT107I	GGYRCC	2 cut(s)	168, 1289
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	3 cut(s)	93, 1460, 1862
BsrGI	TGTACA	1 cut(s)	1263
BsrI	ACTGG	3 cut(s)	111, 1719, 1803
BssECI	CCNNGG	6 cut(s)	164, 325, 604, 903, 1164, 1321
BssMI	GATC	5 cut(s)	835, 844, 1048, 1359, 1600
BssT1I	CCWWGG	2 cut(s)	164, 1164
Bst2UI	CCWGG	4 cut(s)	25, 905, 1072, 1322
Bst4CI	ACNGT	3 cut(s)	346, 478, 1774
Bst6I	CTCTTC	2 cut(s)	795, 1310
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	1263
BstC8I	GCNNGC	5 cut(s)	555, 643, 744, 1276, 1669
BstEII	GGTNACC	1 cut(s)	1592
BstF5I	GGATG	7 cut(s)	360, 511, 760, 787, 1111, 1747, 2029
BstFNI	CGCG	1 cut(s)	645
BstKTI	GATC	5 cut(s)	838, 847, 1051, 1362, 1603
BstMAI	GTCTC	5 cut(s)	66, 653, 987, 1422, 1976
BstMBI	GATC	5 cut(s)	835, 844, 1048, 1359, 1600
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 622, 1275, 1298, 1668, 1928
BstNI	CCWGG	4 cut(s)	25, 905, 1072, 1322
BstNSI	RCATGY	3 cut(s)	557, 982, 1264
BstPI	GGTNACC	1 cut(s)	1592
BstSCI	CCNGG	7 cut(s)	23, 324, 325, 903, 1070, 1320, 1753
BstSLI	GKGCMC	2 cut(s)	1644, 1664
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	4 cut(s)	61, 424, 1691, 1741
BstXI	CCANNNNNNTGG	1 cut(s)	1252
Bsu15I	ATCGAT	1 cut(s)	1152
Bsu36I	CCTNAGG	1 cut(s)	777
BsuI	GTATCC	2 cut(s)	611, 2028
BsuRI	GGCC	2 cut(s)	1949, 2121
BsuTUI	ATCGAT	1 cut(s)	1152
BtsCI	GGATG	7 cut(s)	360, 511, 760, 787, 1111, 1747, 2029
BtsI	GCAGTG	2 cut(s)	45, 1662
BtsIMutI	CAGTG	6 cut(s)	39, 45, 483, 1569, 1662, 1712
BtuMI	TCGCGA	1 cut(s)	645
BveI	ACCTGC	1 cut(s)	1523
Cac8I	GCNNGC	5 cut(s)	555, 643, 744, 1276, 1669
Cfr9I	CCCGGG	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	1152
CseI	GACGC	2 cut(s)	132, 2058
CsiI	ACCWGGT	1 cut(s)	1070
Csp6I	GTAC	4 cut(s)	13, 169, 817, 1264
CviQI	GTAC	4 cut(s)	13, 169, 817, 1264
DpnI	GATC	5 cut(s)	837, 846, 1050, 1361, 1602
DpnII	GATC	5 cut(s)	835, 844, 1048, 1359, 1600
DraI	TTTAAA	1 cut(s)	1200
DraIII	CACNNNGTG	1 cut(s)	2095
Eam1104I	CTCTTC	2 cut(s)	795, 1310
EarI	CTCTTC	2 cut(s)	795, 1310
Ecl136II	GAGCTC	1 cut(s)	625
Eco130I	CCWWGG	2 cut(s)	164, 1164
Eco24I	GRGCYC	3 cut(s)	627, 643, 1906
Eco31I	GGTCTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	1234
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	2066
Eco81I	CCTNAGG	1 cut(s)	777
Eco88I	CYCGRG	1 cut(s)	325
Eco91I	GGTNACC	1 cut(s)	1592
EcoICRI	GAGCTC	1 cut(s)	625
EcoO65I	GGTNACC	1 cut(s)	1592
EcoRI	GAATTC	1 cut(s)	951
EcoRII	CCWGG	4 cut(s)	23, 903, 1070, 1320
EcoRV	GATATC	1 cut(s)	1234
EcoT14I	CCWWGG	2 cut(s)	164, 1164
EcoT38I	GRGCYC	3 cut(s)	627, 643, 1906
ErhI	CCWWGG	2 cut(s)	164, 1164
FalI	AAGNNNNNCTT	2 cut(s)	1730, 1762
FaqI	GGGAC	3 cut(s)	265, 885, 1049
FauI	CCCGC	1 cut(s)	395
FauNDI	CATATG	2 cut(s)	1369, 1579
FbaI	TGATCA	3 cut(s)	1048, 1359, 1600
FblI	GTMKAC	1 cut(s)	1347
Fnu4HI	GCNGC	5 cut(s)	72, 75, 438, 1680, 1730
FokI	GGATG	7 cut(s)	367, 518, 767, 794, 1118, 1754, 2036
FriOI	GRGCYC	3 cut(s)	627, 643, 1906
Fsp4HI	GCNGC	5 cut(s)	72, 75, 438, 1680, 1730
FspBI	CTAG	7 cut(s)	51, 165, 1020, 1178, 1805, 1899, 2093
GluI	GCNGC	5 cut(s)	72, 75, 438, 1680, 1730
GsaI	CCCAGC	2 cut(s)	1793, 1850
GsuI	CTGGAG	1 cut(s)	1820
HaeIII	GGCC	2 cut(s)	1949, 2121
HapII	CCGG	2 cut(s)	326, 1754
HgaI	GACGC	2 cut(s)	132, 2058
HincII	GTYRAC	1 cut(s)	1516
HindII	GTYRAC	1 cut(s)	1516
HindIII	AAGCTT	1 cut(s)	1929
HinfI	GANTC	8 cut(s)	224, 233, 285, 772, 873, 1400, 1421, 1553
HpaII	CCGG	2 cut(s)	326, 1754
HphI	GGTGA	6 cut(s)	499, 602, 781, 1499, 1604, 1862
Hpy166II	GTNNAC	4 cut(s)	1258, 1348, 1516, 1662
Hpy188I	TCNGA	6 cut(s)	238, 605, 844, 849, 1331, 2031
Hpy188III	TCNNGA	7 cut(s)	282, 644, 833, 1283, 1425, 2021, 2115
Hpy8I	GTNNAC	4 cut(s)	1258, 1348, 1516, 1662
Hpy99I	CGWCG	2 cut(s)	448, 1655
HpyAV	CCTTC	8 cut(s)	511, 523, 535, 722, 1280, 1336, 1489, 1948
HpyCH4III	ACNGT	3 cut(s)	346, 478, 1774
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 622, 1275, 1298, 1668, 1928
KpnI	GGTACC	1 cut(s)	172
Ksp22I	TGATCA	3 cut(s)	1048, 1359, 1600
Kzo9I	GATC	5 cut(s)	835, 844, 1048, 1359, 1600
LguI	GCTCTTC	1 cut(s)	1310
LmnI	GCTCC	9 cut(s)	394, 445, 622, 682, 1017, 1499, 1801, 1861, 1957
Lsp1109I	GCAGC	4 cut(s)	61, 424, 1691, 1741
LweI	GCATC	5 cut(s)	345, 405, 1144, 1174, 2014
MabI	ACCWGGT	1 cut(s)	1070
MaeI	CTAG	7 cut(s)	51, 165, 1020, 1178, 1805, 1899, 2093
MaeIII	GTNAC	5 cut(s)	760, 940, 1133, 1592, 2070
MalI	GATC	5 cut(s)	837, 846, 1050, 1361, 1602
MboI	GATC	5 cut(s)	835, 844, 1048, 1359, 1600
MfeI	CAATTG	1 cut(s)	1052
MhlI	GDGCHC	5 cut(s)	627, 643, 1644, 1664, 1906
MlyI	GAGTC	1 cut(s)	1409
MmeI	TCCRAC	2 cut(s)	1039, 1354
MseI	TTAA	5 cut(s)	267, 1083, 1199, 1305, 2108
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	326, 1754
MspR9I	CCNGG	7 cut(s)	25, 326, 327, 905, 1072, 1322, 1755
MunI	CAATTG	1 cut(s)	1052
MvaI	CCWGG	4 cut(s)	25, 905, 1072, 1322
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	6 cut(s)	95, 622, 1275, 1298, 1668, 1928
NciI	CCSGG	3 cut(s)	326, 327, 1755
NdeI	CATATG	2 cut(s)	1369, 1579
NdeII	GATC	5 cut(s)	835, 844, 1048, 1359, 1600
NlaIV	GGNNCC	4 cut(s)	170, 909, 1291, 1857
NmuCI	GTSAC	3 cut(s)	1133, 1592, 2070
NruI	TCGCGA	1 cut(s)	645
NspI	RCATGY	3 cut(s)	557, 982, 1264
PaeI	GCATGC	1 cut(s)	557
PciI	ACATGT	2 cut(s)	978, 1260
PciSI	GCTCTTC	1 cut(s)	1310
PfeI	GAWTC	7 cut(s)	224, 233, 285, 772, 873, 1421, 1553
PflMI	CCANNNNNTGG	1 cut(s)	923
PkrI	GCNGC	5 cut(s)	73, 76, 439, 1681, 1731
PleI	GAGTC	1 cut(s)	1408
PpsI	GAGTC	1 cut(s)	1408
PscI	ACATGT	2 cut(s)	978, 1260
PshBI	ATTAAT	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	4 cut(s)	23, 903, 1070, 1320
PspEI	GGTNACC	1 cut(s)	1592
PspFI	CCCAGC	2 cut(s)	1789, 1846
PspGI	CCWGG	4 cut(s)	23, 903, 1070, 1320
PspN4I	GGNNCC	4 cut(s)	170, 909, 1291, 1857
RruI	TCGCGA	1 cut(s)	645
RsaI	GTAC	4 cut(s)	14, 170, 818, 1265
RsaNI	GTAC	4 cut(s)	13, 169, 817, 1264
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	627
SapI	GCTCTTC	1 cut(s)	1310
SaqAI	TTAA	5 cut(s)	267, 1083, 1199, 1305, 2108
SatI	GCNGC	5 cut(s)	72, 75, 438, 1680, 1730
Sau3AI	GATC	5 cut(s)	835, 844, 1048, 1359, 1600
SchI	GAGTC	1 cut(s)	1409
ScrFI	CCNGG	7 cut(s)	25, 326, 327, 905, 1072, 1322, 1755
SduI	GDGCHC	5 cut(s)	627, 643, 1644, 1664, 1906
SexAI	ACCWGGT	1 cut(s)	1070
SfaNI	GCATC	5 cut(s)	345, 405, 1144, 1174, 2014
SmaI	CCCGGG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	213, 2113
SmoI	CTYRAG	2 cut(s)	213, 2113
SphI	GCATGC	1 cut(s)	557
SsiI	CCGC	2 cut(s)	72, 402
SspMI	CTAG	7 cut(s)	51, 165, 1020, 1178, 1805, 1899, 2093
SstI	GAGCTC	1 cut(s)	627
StyD4I	CCNGG	7 cut(s)	23, 324, 325, 903, 1070, 1320, 1753
StyI	CCWWGG	2 cut(s)	164, 1164
TaaI	ACNGT	3 cut(s)	346, 478, 1774
TaqI	TCGA	3 cut(s)	1152, 1704, 1906
TatI	WGTACW	1 cut(s)	1263
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	7 cut(s)	224, 233, 285, 772, 873, 1421, 1553
Tru1I	TTAA	5 cut(s)	267, 1083, 1199, 1305, 2108
Tru9I	TTAA	5 cut(s)	267, 1083, 1199, 1305, 2108
TscAI	CASTG	6 cut(s)	39, 52, 483, 1569, 1669, 1719
TseFI	GTSAC	3 cut(s)	1133, 1592, 2070
TseI	GCWGC	4 cut(s)	74, 437, 1679, 1729
Tsp45I	GTSAC	3 cut(s)	1133, 1592, 2070
TspDTI	ATGAA	7 cut(s)	105, 554, 1223, 1227, 1355, 1701, 1862
TspGWI	ACGGA	2 cut(s)	432, 1121
TspMI	CCCGGG	1 cut(s)	325
TspRI	CASTG	6 cut(s)	39, 52, 483, 1569, 1669, 1719
Van91I	CCANNNNNTGG	1 cut(s)	923
VneI	GTGCAC	1 cut(s)	1660
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	5 cut(s)	822, 951, 1194, 1449, 1696
XceI	RCATGY	3 cut(s)	557, 982, 1264
XmaI	CCCGGG	1 cut(s)	325
XmaJI	CCTAGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	1347
XspI	CTAG	7 cut(s)	51, 165, 1020, 1178, 1805, 1899, 2093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.