Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011367

Physical Location & Seq

Genomic Coordinates Reverse (-)

7857852 .. 7858574

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0099600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCATAGTGATGTTATTGGCTGGTTGAACCAATGTGCTCAAGAGTTGTCATTAACTCTGTTTGGCGAACTTTTATTCTCTCTTTGGGGGATTTGGAAGGAAAGAAACGACCGGATTTGGAATCAGAAGAAGTGTCAGGCTGTGGATGTCAGTGTGGGACTTGTGTCCAGGCTGCAGGAATTTAGATTCCACAGTTTGAAACCGTCCCAGCCTAGAAATAGAGGCAGAGTGGTGTGGAGATCTCCTCCGGTGGGTTGGGTGAAGATCAATGTTGATGGGGCATTCCATCATGTTTCTCGGAAAGGGGGACTGGGTTTTGTCTTCAGGAATGAGGAAGGTACCATGCTGGGAGGTGGTGCTTGTCGGTTGCATGGTTTGATATCCCCAGAACACGCTGAAATATTGGCCTGCAAGGTGGCTTTGGAGTTTGCGGTGGAGCATGGTTTTGGGCCAGTTATGCTGGAGACTGATGCAATGGAAGTTCATAGTCAACTCTCAGCTCATGATTCTGTTAACACATCATTGCTTGGAAGAATATATGAAGATGTTAGGTTGCTGTTGGAGGCTCAGAATGTCTTACATGTGAGTCACATAGGTAGGAAAGGAAATATGGTGGCCCATTTGCTAGCTAGCCATGCTTGTTCTCTCACAGAGAATGAATTTTATTTTTCAGTCCCAGATGTTTTACAAGCTGCAATTGCAGCTGATATTTGTACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

240

Amino Acids

26.71

Weight (kDa)

6.49

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	90 - 213	1.1e-25	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19520 AT1G19520
fragaria_vesca	FvH4_6g24430
malus_domestica	MD03G1139500.v1.1 MD11G1162300.v1.1
prunus_persica	Prupe.6G124500_v2.0.a1
pyrus_communis	pycom03g09450 pycom11g13170
rosa_chinensis	RchiOBHm_Chr7g0207751
rosa_laevigata	RLG00000003290
rosa_multiflora	Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012
rosa_roxburghii	Rroxscaffold_3G00251180
rosa_rugosa	Rorug07G0099500 Rorug07G0099600
rosa_samantha	Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800
rosa_wichuraiana	Rw7G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	338
AciI	CCGC	1 cut(s)	431
AcsI	RAATTY	2 cut(s)	179, 659
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	2 cut(s)	340, 715
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	2 cut(s)	28, 199
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	500, 629, 692, 704
AluI	AGCT	4 cut(s)	500, 629, 692, 704
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	458
AoxI	GGCC	3 cut(s)	405, 449, 615
ApeKI	GCWGC	3 cut(s)	172, 692, 701
ApoI	RAATTY	2 cut(s)	179, 659
Asp718I	GGTACC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	449, 616
AsuHPI	GGTGA	1 cut(s)	271
AsuNHI	GCTAGC	2 cut(s)	625, 629
BanI	GGYRCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	159, 679, 713
BccI	CCATC	2 cut(s)	269, 294
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	3 cut(s)	213, 626, 630
BfmI	CTRYAG	1 cut(s)	173
BglII	AGATCT	1 cut(s)	239
BisI	GCNGC	3 cut(s)	173, 693, 702
BlsI	GCNGC	3 cut(s)	174, 694, 703
Bme1390I	CCNGG	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	449, 616
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	460
BmtI	GCTAGC	2 cut(s)	629, 633
BmuI	ACTGGG	1 cut(s)	320
BoxI	GACNNNNGTC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpmI	CTGGAG	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	24
BsaWI	WCCGGW	2 cut(s)	111, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	315, 452
Bse3DI	GCAATG	2 cut(s)	480, 521
BseBI	CCWGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	2 cut(s)	480, 521
BseMII	CTCAG	2 cut(s)	510, 581
BseNI	ACTGG	2 cut(s)	315, 452
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	3 cut(s)	159, 679, 713
BseYI	CCCAGC	2 cut(s)	207, 346
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	3 cut(s)	407, 451, 617
BshNI	GGYRCC	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	2 cut(s)	112, 248
BslFI	GGGAC	4 cut(s)	171, 190, 321, 659
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	4 cut(s)	171, 190, 321, 659
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	407, 451, 617
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	239, 264
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	3 cut(s)	407, 451, 617
BspCNI	CTCAG	2 cut(s)	509, 580
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	177
BspOI	GCTAGC	2 cut(s)	629, 633
BspT107I	GGYRCC	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	480, 521
BsrI	ACTGG	2 cut(s)	315, 452
BssMI	GATC	2 cut(s)	239, 264
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	194, 204
BstC8I	GCNNGC	3 cut(s)	409, 627, 631
BstDEI	CTNAG	2 cut(s)	496, 567
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	242, 267
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	2 cut(s)	239, 264
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	4 cut(s)	457, 635, 698, 701
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	584
BstPAI	GACNNNNGTC	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	159, 679, 713
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BsuRI	GGCC	3 cut(s)	407, 451, 617
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	409, 627, 631
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	449, 616
Csp6I	GTAC	2 cut(s)	339, 714
CviAII	CATG	7 cut(s)	290, 343, 371, 440, 503, 581, 635
CviQI	GTAC	2 cut(s)	339, 714
DdeI	CTNAG	2 cut(s)	496, 567
DpnI	GATC	2 cut(s)	241, 266
DpnII	GATC	2 cut(s)	239, 264
Eco32I	GATATC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	7 cut(s)	293, 346, 374, 443, 506, 584, 638
FaqI	GGGAC	4 cut(s)	171, 190, 321, 659
FatI	CATG	7 cut(s)	289, 342, 370, 439, 502, 580, 634
Fnu4HI	GCNGC	3 cut(s)	173, 693, 702
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	3 cut(s)	173, 693, 702
FspBI	CTAG	3 cut(s)	213, 626, 630
GluI	GCNGC	3 cut(s)	173, 693, 702
GsaI	CCCAGC	2 cut(s)	211, 350
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	3 cut(s)	407, 451, 617
HapII	CCGG	2 cut(s)	112, 248
Hin1II	CATG	7 cut(s)	293, 346, 374, 443, 506, 584, 638
HincII	GTYRAC	2 cut(s)	491, 514
HindII	GTYRAC	2 cut(s)	491, 514
HinfI	GANTC	4 cut(s)	121, 186, 506, 586
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	2 cut(s)	112, 248
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	2 cut(s)	491, 514
Hpy188I	TCNGA	3 cut(s)	126, 300, 570
Hpy188III	TCNNGA	3 cut(s)	41, 325, 503
Hpy8I	GTNNAC	2 cut(s)	491, 514
HpyAV	CCTTC	2 cut(s)	91, 329
HpyCH4III	ACNGT	2 cut(s)	194, 204
HpyCH4V	TGCA	7 cut(s)	4, 175, 370, 411, 473, 695, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	457, 635, 698, 701
HpyF3I	CTNAG	2 cut(s)	496, 567
Hsp92II	CATG	7 cut(s)	293, 346, 374, 443, 506, 584, 638
KpnI	GGTACC	1 cut(s)	342
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	239, 264
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	3 cut(s)	159, 679, 713
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	3 cut(s)	213, 626, 630
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	2 cut(s)	241, 266
MboI	GATC	2 cut(s)	239, 264
MboII	GAAGA	5 cut(s)	139, 274, 313, 543, 554
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	3 cut(s)	179, 659, 696
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	5 cut(s)	215, 255, 325, 344, 556
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	53, 513
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	2 cut(s)	112, 248
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	4 cut(s)	457, 635, 698, 701
NdeII	GATC	2 cut(s)	239, 264
NheI	GCTAGC	2 cut(s)	625, 629
NlaIII	CATG	7 cut(s)	293, 346, 374, 443, 506, 584, 638
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	587
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	584
PagI	TCATGA	1 cut(s)	502
PciI	ACATGT	1 cut(s)	580
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	121, 186, 506
PkrI	GCNGC	3 cut(s)	174, 694, 703
PleI	GAGTC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	594
PscI	ACATGT	1 cut(s)	580
PshAI	GACNNNNGTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	167
PspFI	CCCAGC	2 cut(s)	207, 346
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	2 cut(s)	449, 616
PstI	CTGCAG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	2 cut(s)	340, 715
RsaNI	GTAC	2 cut(s)	339, 714
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	53, 513
SatI	GCNGC	3 cut(s)	173, 693, 702
Sau3AI	GATC	2 cut(s)	239, 264
Sau96I	GGNCC	2 cut(s)	449, 616
SchI	GAGTC	1 cut(s)	595
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	9 cut(s)	340, 355, 417, 502, 554, 598, 631, 694, 706
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	179, 659, 696
SsiI	CCGC	1 cut(s)	431
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	3 cut(s)	213, 626, 630
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	194, 204
TasI	AATT	3 cut(s)	179, 659, 696
TatI	WGTACW	1 cut(s)	713
TfiI	GAWTC	3 cut(s)	121, 186, 506
Tru1I	TTAA	2 cut(s)	53, 513
Tru9I	TTAA	2 cut(s)	53, 513
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	3 cut(s)	172, 692, 701
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	3 cut(s)	473, 555, 672
TspRI	CASTG	1 cut(s)	157
XapI	RAATTY	2 cut(s)	179, 659
XceI	RCATGY	1 cut(s)	584
XspI	CTAG	3 cut(s)	213, 626, 630
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.