Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011367

Physical Location & Seq

Genomic Coordinates Forward (+)

45108476 .. 45111100

Gene Structure 2625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGAGTTTGAGGTACTTAGTTTCCAGGCAATCAGTGTCACAATTCACTGCCAGGCTTCGGTCTCAGTATGCCGCTGCGTATGGTTTCGCAACCATTGCAGACCCAATACCCAGTTCATTTCGTTCTGCAACTCATCATGGTGGGTCTAAACCTCTCAAAAACCCTAGGCACCCAATACCCATGAGGTCGTTTAGTAGAGGCATTCACTCTGCTCAAGTGGTTGATTCGGTGGATTCCGATGAGGAGGAGGAAGAAGATGGAGGCATTAATGAGTTTTTGTCCCGATTCGTGTGGATTATACGGCAGAAGCTCAATGTGGCTTACCCGGGTTGCGATAAGGAAACTGTTGATGGGATGCTGATGGTCATTGTGCAGAGGGTTGTGGAGGAGATGGAGCAGGGCGGGTTTGAGCAGATGCTTGGCGAGAGGCAGGGTGCTGCTCCGTCGCAGGATTTTAGTGAGGATTTGTGGAGAACGGTGTGGGAGGTGAGCAATATGGTTTTGGATGACATGAGGAAGGAAGCGAGGAAGGAGAAAATGAAGGGGTTTCTGCATGCTGAGGAAGTCAAGGAGATGTGTAGAGAGCTCAGGTTCAAGTGGGCTCGCGAGAAGATGGAGGAGACTGAGTTTTATGAGAGCTTGGAGCTTCTTAGAGAACAAGAGAAAGCCCAAGAGAAAGGGGAGGAGGAAGGAGAGGTTGTGCAAGATGAGGAGGCTGGTGTAACTGAGGTGAGTCCTAAGGTGGGTTCTCTTCCCAAGAGGCGAGGGAAGATAAGGTACAAAATTTATGGTCTTGATCTCTCTGATCCGAAGTGGGTTGAAGTTGTTGATAGAATCCATGAGGCAGGGGAGGTCATTTGTCCCCAGGAACCCAAACCAATATCTGGGAAATGCAAGTTGGTTACTGAGAGAATTCTTCAATCAAATGAGGCAGATGACATGTCTCCACTTTTGGCTGAATGGGTAGAGTTGCTCCAACCTAGTAGGATTGATTGGGACAATTTGCTTGATCAATTGAAAGAGCAGAACACCAGGTTATACTTTAAGGTGGCAGAACTTGTATTGGATGAGAAATCTTTCCAGACGAACATACGTGACTACTCCATGCTTATCGATGCTTATGCCAAGGAAAATAACCTAGAAGATGCTGAGAGAATTTTAAAGAAGATGAATGAAAATGGGTTTGAACCTGATATCTTCACAACCACTATTTTGGTTCACATGTACAGCAAGGCAGGCAATCTTGAAGGTGCCGACCAAGCATTTAAGACATTGAAGAGCCAGGGCTTCCGACCAGATATGAAGGTCTACAATTCCATGATCAAGGCATATGTAAATGCTAACCAACCAAAATTGGGGGAGTCATTGATGAGAGAGATGGAATCAAGAGACATCAAACCCACAAAAGAAATTTACATGGCATTGCTTCAATCATTTGCCCAACTTGGTGATGTGAAGGGAGCAGAACGAATTGTCAACACTATGATTATGGCAGGTTTTCAGCCAACTTTAGAATCTTGTTCAGTGCTTGTTGAGGCATATGGAAAAGCTGGTGACCCTGATCAGGCAAGGCACAACTTTGATTACATAATAAAAGTTGGGCACAAACCTGACGACAAGTGCACTGCAAGCATGATTGCAGCTTATGAAAAGAAGAATTTACTCGATAAGGCACTGGATTTGTTGTTGCAGCTTGAAAAGGATGGCTTTGAGCCGGGAGTTGCTACTTACACAGTTCTTGTAGATTGGCTGGGAAAACTGCAGCTAGTTAGTGAGGCTGAACAGCTATTGGACAAAATTGCTGAGCTGGGTGAGGCTCCTCCATTGCAACTTCATGTAAGCATTTGCGACATGTATGCTAGGGCTGGATTTGAGAAAAAGGCACTACAAGCTTTGGGAGTTTTGGAGGCTAAGAAGGAGCAACTGAGTTCAGATGACTTTGTGACAATTATCGAGGGGCTTATGACTGGTGGATTTTTTCAGGATGCTCAGAGGATACGGGGAGTGATGGAGGCTCAGGGTTTTGTTGCGTCACAGCAACTTCAGTTGCACCTAGTGGCTAAAAGTTTTAACCACAAGAGGCCATCAATGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

698

Amino Acids

79.29

Weight (kDa)

5.17

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	354 - 449	4.8e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	356 - 401	2.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	367 - 411	3.1e-10	PPR repeat family
PPR_long	PF17177	374 - 484	9.5e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	385 - 446	8.8e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	432 - 468	6.2e-06	PPR repeat family
PPR_3	PF13812	455 - 516	1.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	544 - 585	7.3e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19520 AT1G19520
fragaria_vesca	FvH4_6g24430
malus_domestica	MD03G1139500.v1.1 MD11G1162300.v1.1
prunus_persica	Prupe.6G124500_v2.0.a1
pyrus_communis	pycom03g09450 pycom11g13170
rosa_chinensis	RchiOBHm_Chr7g0207751
rosa_laevigata	RLG00000003290
rosa_multiflora	Rmu_sc0005968.1_g000001 Rmu_sc0007645.1_g000012
rosa_roxburghii	Rroxscaffold_3G00251180
rosa_rugosa	Rorug07G0099500 Rorug07G0099600
rosa_samantha	Rh7AG232700 Rh7BG228000 Rh7CG246500 Rh7DG238800
rosa_wichuraiana	Rw7G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1484
AccB1I	GGYRCC	2 cut(s)	168, 1250
AccB7I	CCANNNNNTGG	1 cut(s)	884
AccI	GTMKAC	1 cut(s)	1308
AccII	CGCG	1 cut(s)	606
AciI	CCGC	2 cut(s)	72, 402
AclWI	GGATC	1 cut(s)	800
AcsI	RAATTY	5 cut(s)	783, 912, 1155, 1410, 1657
AcuI	CTGAAG	1 cut(s)	2027
AdeI	CACNNNGTG	1 cut(s)	2056
AfaI	GTAC	3 cut(s)	14, 779, 1226
AfiI	CCNNNNNNNGG	5 cut(s)	57, 743, 884, 1355, 1564
AflIII	ACRYGT	3 cut(s)	939, 1221, 1851
AgsI	TTSAA	9 cut(s)	595, 821, 920, 1018, 1187, 1247, 1276, 1430, 1697
AjnI	CCWGG	5 cut(s)	23, 50, 864, 1031, 1281
AjuI	GAANNNNNNNTTGG	4 cut(s)	97, 129, 881, 913
Alw21I	GWGCWC	2 cut(s)	588, 1625
Alw26I	GTCTC	4 cut(s)	66, 614, 948, 1383
Alw44I	GTGCAC	1 cut(s)	1621
AlwI	GGATC	1 cut(s)	800
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	1 cut(s)	2081
ApaLI	GTGCAC	1 cut(s)	1621
ApeKI	GCWGC	5 cut(s)	74, 437, 1640, 1690, 1762
ApoI	RAATTY	5 cut(s)	783, 912, 1155, 1410, 1657
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	1076
AspA2I	CCTAGG	1 cut(s)	164
AsuC2I	CCSGG	3 cut(s)	326, 327, 1716
AsuHPI	GGTGA	5 cut(s)	499, 742, 1460, 1565, 1823
AvaI	CYCGRG	1 cut(s)	325
AvrII	CCTAGG	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	738
BaeGI	GKGCMC	2 cut(s)	1605, 1625
BanI	GGYRCC	2 cut(s)	168, 1250
BanII	GRGCYC	2 cut(s)	588, 604
BarI	GAAGNNNNNNTAC	2 cut(s)	761, 793
Bbv12I	GWGCWC	2 cut(s)	588, 1625
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	5 cut(s)	61, 424, 1652, 1702, 1774
BccI	CCATC	9 cut(s)	251, 344, 355, 385, 607, 1372, 1697, 2002, 2092
BceAI	ACGGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	4 cut(s)	1103, 1137, 1838, 1872
BciT130I	CCWGG	5 cut(s)	25, 52, 866, 1033, 1283
BciVI	GTATCC	1 cut(s)	1989
BclI	TGATCA	3 cut(s)	1009, 1320, 1561
BcnI	CCSGG	3 cut(s)	326, 327, 1716
BcoDI	GTCTC	4 cut(s)	66, 614, 948, 1383
BfaI	CTAG	6 cut(s)	165, 981, 1139, 1766, 1860, 2054
BfmI	CTRYAG	1 cut(s)	1760
BfuAI	ACCTGC	1 cut(s)	1484
BfuI	GTATCC	1 cut(s)	1989
BisI	GCNGC	6 cut(s)	72, 75, 438, 1641, 1691, 1763
BlnI	CCTAGG	1 cut(s)	164
BlpI	GCTNAGC	1 cut(s)	1803
BlsI	GCNGC	6 cut(s)	73, 76, 439, 1642, 1692, 1764
Bme1390I	CCNGG	8 cut(s)	25, 52, 326, 327, 866, 1033, 1283, 1716
BmeT110I	CYCGRG	1 cut(s)	325
BmiI	GGNNCC	4 cut(s)	170, 870, 1252, 1818
BmrFI	CCNGG	8 cut(s)	25, 52, 326, 327, 866, 1033, 1283, 1716
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	5 cut(s)	345, 405, 1105, 1135, 1975
BmuI	ACTGGG	1 cut(s)	105
Bpu10I	CCTNAGC	3 cut(s)	558, 587, 2016
Bpu1102I	GCTNAGC	1 cut(s)	1803
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	3 cut(s)	326, 327, 1716
Bsa29I	ATCGAT	1 cut(s)	1113
BsaAI	YACGTR	1 cut(s)	1094
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	5 cut(s)	164, 325, 864, 1125, 1282
BsaXI	ACNNNNNCTCC	4 cut(s)	611, 641, 684, 714
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 743, 884, 1355, 1564
Bse1I	ACTGG	3 cut(s)	111, 1680, 1972
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	3 cut(s)	93, 1421, 1823
BseBI	CCWGG	5 cut(s)	25, 52, 866, 1033, 1283
BseCI	ATCGAT	1 cut(s)	1113
BseDI	CCNNGG	5 cut(s)	164, 325, 864, 1125, 1282
BseGI	GGATG	5 cut(s)	360, 511, 1072, 1708, 1990
BseLI	CCNNNNNNNGG	5 cut(s)	57, 743, 884, 1355, 1564
BseMI	GCAATG	3 cut(s)	93, 1421, 1823
BseNI	ACTGG	3 cut(s)	111, 1680, 1972
BseRI	GAGGAG	7 cut(s)	257, 260, 401, 632, 698, 725, 1809
BseSI	GKGCMC	2 cut(s)	1605, 1625
BseXI	GCAGC	5 cut(s)	61, 424, 1652, 1702, 1774
BseYI	CCCAGC	2 cut(s)	1750, 1807
BsgI	GTGCAG	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	2083
BshNI	GGYRCC	2 cut(s)	168, 1250
BshVI	ATCGAT	1 cut(s)	1113
BsiHKAI	GWGCWC	2 cut(s)	588, 1625
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	326, 1715
BslFI	GGGAC	3 cut(s)	265, 846, 1010
BslI	CCNNNNNNNGG	5 cut(s)	57, 743, 884, 1355, 1564
BsmAI	GTCTC	4 cut(s)	66, 614, 948, 1383
BsmFI	GGGAC	3 cut(s)	265, 846, 1010
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	2083
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	4 cut(s)	588, 604, 1605, 1625
Bsp1407I	TGTACA	1 cut(s)	1224
Bsp143I	GATC	5 cut(s)	796, 805, 1009, 1320, 1561
Bsp1720I	GCTNAGC	1 cut(s)	1803
Bsp68I	TCGCGA	1 cut(s)	606
BspACI	CCGC	2 cut(s)	72, 402
BspANI	GGCC	1 cut(s)	2083
BspDI	ATCGAT	1 cut(s)	1113
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	4 cut(s)	170, 870, 1252, 1818
BspMAI	CTGCAG	1 cut(s)	1764
BspMI	ACCTGC	1 cut(s)	1484
BspPI	GGATC	1 cut(s)	800
BspQI	GCTCTTC	1 cut(s)	1271
BspT107I	GGYRCC	2 cut(s)	168, 1250
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	3 cut(s)	93, 1421, 1823
BsrGI	TGTACA	1 cut(s)	1224
BsrI	ACTGG	3 cut(s)	111, 1680, 1972
BssECI	CCNNGG	5 cut(s)	164, 325, 864, 1125, 1282
BssMI	GATC	5 cut(s)	796, 805, 1009, 1320, 1561
BssT1I	CCWWGG	2 cut(s)	164, 1125
Bst2UI	CCWGG	5 cut(s)	25, 52, 866, 1033, 1283
Bst4CI	ACNGT	3 cut(s)	346, 478, 1735
Bst6I	CTCTTC	2 cut(s)	756, 1271
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	1224
BstBAI	YACGTR	1 cut(s)	1094
BstC8I	GCNNGC	4 cut(s)	555, 604, 1237, 1630
BstEII	GGTNACC	1 cut(s)	1553
BstF5I	GGATG	5 cut(s)	360, 511, 1072, 1708, 1990
BstFNI	CGCG	1 cut(s)	606
BstKTI	GATC	5 cut(s)	799, 808, 1012, 1323, 1564
BstMAI	GTCTC	4 cut(s)	66, 614, 948, 1383
BstMBI	GATC	5 cut(s)	796, 805, 1009, 1320, 1561
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 1236, 1259, 1629, 1889
BstNI	CCWGG	5 cut(s)	25, 52, 866, 1033, 1283
BstNSI	RCATGY	4 cut(s)	557, 943, 1225, 1855
BstPI	GGTNACC	1 cut(s)	1553
BstSCI	CCNGG	8 cut(s)	23, 50, 324, 325, 864, 1031, 1281, 1714
BstSFI	CTRYAG	1 cut(s)	1760
BstSLI	GKGCMC	2 cut(s)	1605, 1625
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	5 cut(s)	61, 424, 1652, 1702, 1774
BstXI	CCANNNNNNTGG	1 cut(s)	1213
Bsu15I	ATCGAT	1 cut(s)	1113
Bsu36I	CCTNAGG	1 cut(s)	738
BsuI	GTATCC	1 cut(s)	1989
BsuRI	GGCC	1 cut(s)	2083
BsuTUI	ATCGAT	1 cut(s)	1113
BtsCI	GGATG	5 cut(s)	360, 511, 1072, 1708, 1990
BtsI	GCAGTG	2 cut(s)	45, 1623
BtsIMutI	CAGTG	5 cut(s)	39, 45, 1530, 1623, 1673
BtuMI	TCGCGA	1 cut(s)	606
BveI	ACCTGC	1 cut(s)	1484
Cac8I	GCNNGC	4 cut(s)	555, 604, 1237, 1630
Cfr9I	CCCGGG	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	1113
CseI	GACGC	1 cut(s)	2019
CsiI	ACCWGGT	1 cut(s)	1031
Csp6I	GTAC	3 cut(s)	13, 778, 1225
CviQI	GTAC	3 cut(s)	13, 778, 1225
DpnI	GATC	5 cut(s)	798, 807, 1011, 1322, 1563
DpnII	GATC	5 cut(s)	796, 805, 1009, 1320, 1561
DraI	TTTAAA	1 cut(s)	1161
DraIII	CACNNNGTG	1 cut(s)	2056
Eam1104I	CTCTTC	2 cut(s)	756, 1271
EarI	CTCTTC	2 cut(s)	756, 1271
Ecl136II	GAGCTC	1 cut(s)	586
Eco130I	CCWWGG	2 cut(s)	164, 1125
Eco24I	GRGCYC	2 cut(s)	588, 604
Eco31I	GGTCTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	1195
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	2027
Eco81I	CCTNAGG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	325
Eco91I	GGTNACC	1 cut(s)	1553
EcoICRI	GAGCTC	1 cut(s)	586
EcoO65I	GGTNACC	1 cut(s)	1553
EcoRI	GAATTC	1 cut(s)	912
EcoRII	CCWGG	5 cut(s)	23, 50, 864, 1031, 1281
EcoRV	GATATC	1 cut(s)	1195
EcoT14I	CCWWGG	2 cut(s)	164, 1125
EcoT38I	GRGCYC	2 cut(s)	588, 604
ErhI	CCWWGG	2 cut(s)	164, 1125
FalI	AAGNNNNNCTT	2 cut(s)	1691, 1723
FaqI	GGGAC	3 cut(s)	265, 846, 1010
FauI	CCCGC	1 cut(s)	395
FauNDI	CATATG	2 cut(s)	1330, 1540
FbaI	TGATCA	3 cut(s)	1009, 1320, 1561
FblI	GTMKAC	1 cut(s)	1308
Fnu4HI	GCNGC	6 cut(s)	72, 75, 438, 1641, 1691, 1763
FokI	GGATG	5 cut(s)	367, 518, 1079, 1715, 1997
FriOI	GRGCYC	2 cut(s)	588, 604
Fsp4HI	GCNGC	6 cut(s)	72, 75, 438, 1641, 1691, 1763
FspBI	CTAG	6 cut(s)	165, 981, 1139, 1766, 1860, 2054
GluI	GCNGC	6 cut(s)	72, 75, 438, 1641, 1691, 1763
GsaI	CCCAGC	2 cut(s)	1754, 1811
HaeIII	GGCC	1 cut(s)	2083
HapII	CCGG	2 cut(s)	326, 1715
HgaI	GACGC	1 cut(s)	2019
HincII	GTYRAC	1 cut(s)	1477
HindII	GTYRAC	1 cut(s)	1477
HindIII	AAGCTT	1 cut(s)	1890
HinfI	GANTC	8 cut(s)	224, 233, 285, 733, 834, 1361, 1382, 1514
HpaII	CCGG	2 cut(s)	326, 1715
HphI	GGTGA	5 cut(s)	499, 742, 1460, 1565, 1823
Hpy166II	GTNNAC	4 cut(s)	1219, 1309, 1477, 1623
Hpy188I	TCNGA	6 cut(s)	238, 805, 810, 1292, 1933, 1992
Hpy188III	TCNNGA	7 cut(s)	282, 605, 794, 1081, 1244, 1386, 1982
Hpy8I	GTNNAC	4 cut(s)	1219, 1309, 1477, 1623
Hpy99I	CGWCG	1 cut(s)	448
HpyAV	CCTTC	8 cut(s)	511, 523, 535, 683, 1241, 1297, 1450, 1909
HpyCH4III	ACNGT	3 cut(s)	346, 478, 1735
HpyCH4IV	ACGT	1 cut(s)	1093
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 1236, 1259, 1629, 1889
HpySE526I	ACGT	1 cut(s)	1093
Ksp22I	TGATCA	3 cut(s)	1009, 1320, 1561
Kzo9I	GATC	5 cut(s)	796, 805, 1009, 1320, 1561
LguI	GCTCTTC	1 cut(s)	1271
LmnI	GCTCC	7 cut(s)	394, 445, 643, 978, 1460, 1822, 1918
Lsp1109I	GCAGC	5 cut(s)	61, 424, 1652, 1702, 1774
LweI	GCATC	5 cut(s)	345, 405, 1105, 1135, 1975
MabI	ACCWGGT	1 cut(s)	1031
MaeI	CTAG	6 cut(s)	165, 981, 1139, 1766, 1860, 2054
MaeII	ACGT	1 cut(s)	1093
MaeIII	GTNAC	7 cut(s)	36, 721, 901, 1094, 1553, 1942, 2031
MalI	GATC	5 cut(s)	798, 807, 1011, 1322, 1563
MboI	GATC	5 cut(s)	796, 805, 1009, 1320, 1561
MfeI	CAATTG	1 cut(s)	1013
MhlI	GDGCHC	4 cut(s)	588, 604, 1605, 1625
MlyI	GAGTC	2 cut(s)	742, 1370
MmeI	TCCRAC	2 cut(s)	1000, 1315
MroXI	GAANNNNTTC	1 cut(s)	1076
MseI	TTAA	5 cut(s)	267, 1044, 1160, 1266, 2070
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	326, 1715
MspR9I	CCNGG	8 cut(s)	25, 52, 326, 327, 866, 1033, 1283, 1716
MunI	CAATTG	1 cut(s)	1013
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	5 cut(s)	25, 52, 866, 1033, 1283
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	5 cut(s)	95, 1236, 1259, 1629, 1889
NciI	CCSGG	3 cut(s)	326, 327, 1716
NdeI	CATATG	2 cut(s)	1330, 1540
NdeII	GATC	5 cut(s)	796, 805, 1009, 1320, 1561
NlaIV	GGNNCC	4 cut(s)	170, 870, 1252, 1818
NmuCI	GTSAC	5 cut(s)	36, 1094, 1553, 1942, 2031
NruI	TCGCGA	1 cut(s)	606
NspI	RCATGY	4 cut(s)	557, 943, 1225, 1855
PaeI	GCATGC	1 cut(s)	557
PciI	ACATGT	3 cut(s)	939, 1221, 1851
PciSI	GCTCTTC	1 cut(s)	1271
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	1076
PfeI	GAWTC	6 cut(s)	224, 233, 285, 834, 1382, 1514
PflMI	CCANNNNNTGG	1 cut(s)	884
PkrI	GCNGC	6 cut(s)	73, 76, 439, 1642, 1692, 1764
PleI	GAGTC	2 cut(s)	741, 1369
PpsI	GAGTC	2 cut(s)	741, 1369
Ppu21I	YACGTR	1 cut(s)	1094
PscI	ACATGT	3 cut(s)	939, 1221, 1851
PshBI	ATTAAT	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	588
Psp6I	CCWGG	5 cut(s)	23, 50, 864, 1031, 1281
PspEI	GGTNACC	1 cut(s)	1553
PspFI	CCCAGC	2 cut(s)	1750, 1807
PspGI	CCWGG	5 cut(s)	23, 50, 864, 1031, 1281
PspN4I	GGNNCC	4 cut(s)	170, 870, 1252, 1818
PstI	CTGCAG	1 cut(s)	1764
RruI	TCGCGA	1 cut(s)	606
RsaI	GTAC	3 cut(s)	14, 779, 1226
RsaNI	GTAC	3 cut(s)	13, 778, 1225
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	1271
SaqAI	TTAA	5 cut(s)	267, 1044, 1160, 1266, 2070
SatI	GCNGC	6 cut(s)	72, 75, 438, 1641, 1691, 1763
Sau3AI	GATC	5 cut(s)	796, 805, 1009, 1320, 1561
SchI	GAGTC	2 cut(s)	742, 1370
ScrFI	CCNGG	8 cut(s)	25, 52, 326, 327, 866, 1033, 1283, 1716
SduI	GDGCHC	4 cut(s)	588, 604, 1605, 1625
SexAI	ACCWGGT	1 cut(s)	1031
SfaNI	GCATC	5 cut(s)	345, 405, 1105, 1135, 1975
SfcI	CTRYAG	1 cut(s)	1760
SmaI	CCCGGG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	557
SsiI	CCGC	2 cut(s)	72, 402
SspMI	CTAG	6 cut(s)	165, 981, 1139, 1766, 1860, 2054
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	8 cut(s)	23, 50, 324, 325, 864, 1031, 1281, 1714
StyI	CCWWGG	2 cut(s)	164, 1125
TaaI	ACNGT	3 cut(s)	346, 478, 1735
TaiI	ACGT	1 cut(s)	1096
TaqI	TCGA	3 cut(s)	1113, 1665, 1953
TaqII	GACCGA	1 cut(s)	48
TatI	WGTACW	1 cut(s)	1224
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	6 cut(s)	224, 233, 285, 834, 1382, 1514
Tru1I	TTAA	5 cut(s)	267, 1044, 1160, 1266, 2070
Tru9I	TTAA	5 cut(s)	267, 1044, 1160, 1266, 2070
TscAI	CASTG	5 cut(s)	39, 52, 1530, 1630, 1680
TseFI	GTSAC	5 cut(s)	36, 1094, 1553, 1942, 2031
TseI	GCWGC	5 cut(s)	74, 437, 1640, 1690, 1762
Tsp45I	GTSAC	5 cut(s)	36, 1094, 1553, 1942, 2031
TspDTI	ATGAA	7 cut(s)	105, 554, 1184, 1188, 1316, 1662, 1823
TspGWI	ACGGA	1 cut(s)	432
TspMI	CCCGGG	1 cut(s)	325
TspRI	CASTG	5 cut(s)	39, 52, 1530, 1630, 1680
Van91I	CCANNNNNTGG	1 cut(s)	884
VneI	GTGCAC	1 cut(s)	1621
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	5 cut(s)	783, 912, 1155, 1410, 1657
XceI	RCATGY	4 cut(s)	557, 943, 1225, 1855
XmaI	CCCGGG	1 cut(s)	325
XmaJI	CCTAGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	1308
XmnI	GAANNNNTTC	1 cut(s)	1076
XspI	CTAG	6 cut(s)	165, 981, 1139, 1766, 1860, 2054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.