Rh2CG348800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014880
Physical Location & Seq
Forward (+)
47043975 .. 47044397
423 bp
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UTR
Exon/CDS
Intron
Rh2CG348800.1

Sequence Viewer

Length: 423 bp
ATGAACTGTGTCAGGTCAGTCTCACTCTCTGTTTTGATTAATGGCAAAACTGGTCCGTTCTTTCTTCCCACTCAGGGTATTCGTCAAGGAGACCCTCTATCTCCGCATCTTTTTCTTTTTGTTAATGATGTCCTCTCTATCATGATTCAGAAATTCTGCCAAAAAAACTTGCTTCATGCTCTCCAGTTTGGTCTGAATGGCCCAAAAGTTAGCTATTTATTATTTGCTGATGATTCCATATTCTTCATGAAGGCTACGCTTGCAAACTGTGAAGTGTTTTCAGATATTATTCACTCTTATTGCTCTGCTTCAGGACAATGGGTGAATACTCATAAATCATCCCTCTTCTTCTTTCCTAATACTGATTATTGTATTGTGCATCGATCTTCTCAGTTCTATCCTTCGTATGAAGGTGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

140

Amino Acids

15.76

Weight (kDa)

7.67

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 13 - 116 1.6e-08 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 74
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
Alw26I GTCTC 2 cut(s) 25, 84
AoxI GGCC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 152
AseI ATTAAT 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 53, 200
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 25, 84
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 2 cut(s) 53, 200
BmsI GCATC 2 cut(s) 115, 388
BpmI CTGGAG 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 55, 184
BseCI ATCGAT 1 cut(s) 382
BseGI GGATG 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 2 cut(s) 86, 404
BseNI ACTGG 2 cut(s) 55, 184
BshFI GGCC 1 cut(s) 201
BshVI ATCGAT 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 25, 84
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 383
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 85, 403
BspDI ATCGAT 1 cut(s) 382
BspHI TCATGA 2 cut(s) 141, 246
BspTNI GGTCTC 1 cut(s) 84
BsrI ACTGG 2 cut(s) 55, 184
BssMI GATC 1 cut(s) 383
Bst4CI ACNGT 2 cut(s) 8, 269
Bst6I CTCTTC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 72, 390
BstF5I GGATG 1 cut(s) 338
BstKTI GATC 1 cut(s) 386
BstMAI GTCTC 2 cut(s) 25, 84
BstMBI GATC 1 cut(s) 383
BstMWI GCNNNNNNNGC 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 382
BsuRI GGCC 1 cut(s) 201
BsuTUI ATCGAT 1 cut(s) 382
BtsCI GGATG 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 261
CciI TCATGA 2 cut(s) 141, 246
Cfr13I GGNCC 2 cut(s) 53, 200
ClaI ATCGAT 1 cut(s) 382
CviAII CATG 3 cut(s) 142, 176, 247
CviJI RGCY 3 cut(s) 201, 213, 254
CviKI_1 RGCY 3 cut(s) 201, 213, 254
DdeI CTNAG 2 cut(s) 72, 390
DpnI GATC 1 cut(s) 385
DpnII GATC 1 cut(s) 383
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 294
FaeI CATG 3 cut(s) 145, 179, 250
FaiI YATR 6 cut(s) 143, 177, 239, 248, 333, 408
FatI CATG 3 cut(s) 141, 175, 246
FokI GGATG 1 cut(s) 325
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 201
Hin1II CATG 3 cut(s) 145, 179, 250
HinfI GANTC 2 cut(s) 145, 233
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 3 cut(s) 150, 195, 283
Hpy188III TCNNGA 3 cut(s) 142, 247, 312
HpyAV CCTTC 3 cut(s) 244, 404, 411
HpyCH4III ACNGT 2 cut(s) 8, 269
HpyCH4V TGCA 2 cut(s) 263, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 72, 390
Hsp92II CATG 3 cut(s) 145, 179, 250
Kzo9I GATC 1 cut(s) 383
LpnPI CCDG 4 cut(s) 36, 59, 197, 297
LweI GCATC 2 cut(s) 115, 388
MalI GATC 1 cut(s) 385
MboI GATC 1 cut(s) 383
MboII GAAGA 5 cut(s) 56, 235, 337, 340, 378
MluCI AATT 1 cut(s) 152
MnlI CCTC 3 cut(s) 105, 143, 353
MseI TTAA 2 cut(s) 39, 123
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 1 cut(s) 383
NlaIII CATG 3 cut(s) 145, 179, 250
PagI TCATGA 2 cut(s) 141, 246
PfeI GAWTC 2 cut(s) 145, 233
PshBI ATTAAT 1 cut(s) 39
PspPI GGNCC 2 cut(s) 53, 200
SaqAI TTAA 2 cut(s) 39, 123
Sau3AI GATC 1 cut(s) 383
Sau96I GGNCC 2 cut(s) 53, 200
SetI ASST 3 cut(s) 17, 215, 415
SfaNI GCATC 2 cut(s) 115, 388
SinI GGWCC 1 cut(s) 53
Sse9I AATT 1 cut(s) 152
SsiI CCGC 1 cut(s) 104
TaaI ACNGT 2 cut(s) 8, 269
TaqI TCGA 1 cut(s) 382
TasI AATT 1 cut(s) 152
TfiI GAWTC 2 cut(s) 145, 233
Tru1I TTAA 2 cut(s) 39, 123
Tru9I TTAA 2 cut(s) 39, 123
TspDTI ATGAA 5 cut(s) 17, 164, 235, 263, 423
TspGWI ACGGA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 39
XapI RAATTY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.