Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014880

Physical Location & Seq

Genomic Coordinates Forward (+)

51653678 .. 51658093

Gene Structure 4416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAAGATTGTAATCTTATGAGCTGGCAAATTTGGGGAGCGAGGAACAATTTAATTTTCAACAATACTTCTGCTTTCCCAAATAATGTCATTCATATTGCTGCCTCAGTTGTTTCCAACTACAGAAGAAACAATCCGCCTTCTATCAAGCTAAGGCTGGCTCCTCTTGGTTCACTTTCTGTCTTACCTGCATGGTTAGAGATGCACGTTGACCTCGACTGGAGAAGGGTGCATTACAAGGAGCAAAGATTGGAGTCAGCTAAAAGTGAATTTGAAGACACTATCGCATTGTTCAAACGTATGGAAGACTTCCCTTTTAGGCCCATTGACTCGGCTCAGGTCCGCATTCCGGTCAAGGCAGCTAGGAGGGTTACGCAGCCCACCAATCCCTCCCATGAGGACCTCACCACCAACCCTACCACCATCACACCTTGCACCGCCAAGTCACCACCACGGTCGGGGCACCACTATCCCCGTTGCTCCTCTAAGCCGGATCTTGTGAGCAGCTCAACGGAGACGAGTCCGGGCTCCAAAGCCACACCAAAATCTTCCGAATCTGCTACAACAATTGAAACCGATCGTGCCCCATGGACACCACGATCGATCCGGGTTCTCCCTTGCCGACAAGTCACCATCTTGCCACCATTGAACAGATTTGGAAAATCACCTTCTAGCCAACCGAAAAGAGATCCAAAACCTAGCCGCCCCGATCTACCCCCAATGCCGGTCCCTTCTACCACTAATCCGAGCTACAAAAACCACCAAGAACCAAGCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.07

Weight (kDa)

9.79

Isoelectric Point (pI)

70.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014880)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23121
prunus_persica	Prupe.1G096300_v2.0.a1 Prupe.2G149100_v2.0.a1
pyrus_communis	pycom11g21820 pycom12401g00240
rosa_chinensis	RchiOBHm_Chr3g0490381
rosa_laevigata	RLG00000030695
rosa_multiflora	Rmu_sc0001767.1_g000001 Rmu_sc0003177.1_g000032 Rmu_sc0007121.1_g000017
rosa_roxburghii	Rroxscaffold_5G00369940
rosa_rugosa	Rorug07G0099500
rosa_samantha	Rh2CG198100 Rh2CG348800 Rh4CG274000 Rh5AG302200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	462
AciI	CCGC	4 cut(s)	137, 343, 438, 703
AclWI	GGATC	3 cut(s)	501, 598, 683
AcsI	RAATTY	2 cut(s)	30, 269
AfiI	CCNNNNNNNGG	3 cut(s)	349, 458, 724
AgsI	TTSAA	5 cut(s)	61, 275, 295, 572, 649
AluBI	AGCT	6 cut(s)	24, 151, 260, 362, 507, 750
AluI	AGCT	6 cut(s)	24, 151, 260, 362, 507, 750
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	3 cut(s)	501, 598, 683
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	4 cut(s)	101, 359, 376, 504
ApoI	RAATTY	2 cut(s)	30, 269
AspS9I	GGNCC	4 cut(s)	321, 340, 400, 727
AsuC2I	CCSGG	2 cut(s)	525, 608
AsuHPI	GGTGA	4 cut(s)	397, 438, 622, 657
AvaII	GGWCC	3 cut(s)	340, 400, 727
BaeGI	GKGCMC	2 cut(s)	465, 586
BanI	GGYRCC	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	530
BbsI	GAAGAC	2 cut(s)	282, 312
BbvI	GCAGC	4 cut(s)	88, 371, 388, 516
BccI	CCATC	2 cut(s)	431, 641
BcnI	CCSGG	2 cut(s)	525, 608
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	4 cut(s)	363, 672, 699, 778
BfmI	CTRYAG	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	5 cut(s)	102, 360, 377, 505, 703
BlsI	GCNGC	5 cut(s)	103, 361, 378, 506, 704
Bme1390I	CCNGG	2 cut(s)	525, 608
Bme18I	GGWCC	3 cut(s)	340, 400, 727
BmgT120I	GGNCC	4 cut(s)	321, 340, 400, 727
BmiI	GGNNCC	4 cut(s)	162, 464, 529, 729
BmrFI	CCNGG	2 cut(s)	525, 608
BmsI	GCATC	1 cut(s)	192
BpiI	GAAGAC	2 cut(s)	282, 312
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	2 cut(s)	152, 336
BpuMI	CCSGG	2 cut(s)	525, 608
Bsa29I	ATCGAT	1 cut(s)	602
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	452, 587
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 458, 724
Bse118I	RCCGGY	1 cut(s)	724
Bse1I	ACTGG	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	12
BseCI	ATCGAT	1 cut(s)	602
BseDI	CCNNGG	2 cut(s)	452, 587
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	3 cut(s)	349, 458, 724
BseMII	CTCAG	2 cut(s)	120, 350
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	2 cut(s)	153, 472
BseSI	GKGCMC	2 cut(s)	465, 586
BseXI	GCAGC	4 cut(s)	88, 371, 388, 516
Bsh1285I	CGRYCG	3 cut(s)	458, 580, 602
BshFI	GGCC	1 cut(s)	322
BshNI	GGYRCC	1 cut(s)	462
BshVI	ATCGAT	1 cut(s)	602
BsiEI	CGRYCG	3 cut(s)	458, 580, 602
BsiSI	CCGG	5 cut(s)	350, 491, 524, 607, 725
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	3 cut(s)	349, 458, 724
BsmAI	GTCTC	1 cut(s)	509
BsmBI	CGTCTC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	713
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	322
Bsp1286I	GDGCHC	3 cut(s)	465, 530, 586
Bsp143I	GATC	6 cut(s)	493, 577, 599, 603, 688, 709
Bsp19I	CCATGG	1 cut(s)	587
BspACI	CCGC	4 cut(s)	137, 343, 438, 703
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	2 cut(s)	119, 349
BspDI	ATCGAT	1 cut(s)	602
BspLI	GGNNCC	4 cut(s)	162, 464, 529, 729
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	3 cut(s)	501, 598, 683
BspT107I	GGYRCC	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	724
BssECI	CCNNGG	2 cut(s)	452, 587
BssMI	GATC	6 cut(s)	493, 577, 599, 603, 688, 709
BssT1I	CCWWGG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	26, 159
BstDEI	CTNAG	4 cut(s)	106, 152, 336, 486
BstDSI	CCRYGG	2 cut(s)	452, 587
BstKTI	GATC	6 cut(s)	496, 580, 602, 606, 691, 712
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	6 cut(s)	493, 577, 599, 603, 688, 709
BstMCI	CGRYCG	3 cut(s)	458, 580, 602
BstSCI	CCNGG	2 cut(s)	523, 606
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	2 cut(s)	465, 586
BstV1I	GCAGC	4 cut(s)	88, 371, 388, 516
BstV2I	GAAGAC	2 cut(s)	282, 312
BstX2I	RGATCY	2 cut(s)	493, 688
BstYI	RGATCY	2 cut(s)	493, 688
Bsu15I	ATCGAT	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	322
BsuTUI	ATCGAT	1 cut(s)	602
BtgI	CCRYGG	2 cut(s)	452, 587
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	26, 159
Cfr10I	RCCGGY	1 cut(s)	724
Cfr13I	GGNCC	4 cut(s)	321, 340, 400, 727
ClaI	ATCGAT	1 cut(s)	602
CviAII	CATG	3 cut(s)	192, 395, 588
DdeI	CTNAG	4 cut(s)	106, 152, 336, 486
DpnI	GATC	6 cut(s)	495, 579, 601, 605, 690, 711
DpnII	GATC	6 cut(s)	493, 577, 599, 603, 688, 709
EciI	GGCGGA	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	530
Eco47I	GGWCC	3 cut(s)	340, 400, 727
EcoO109I	RGGNCCY	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	587
EcoT38I	GRGCYC	1 cut(s)	530
ErhI	CCWWGG	1 cut(s)	587
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	3 cut(s)	195, 398, 591
FaiI	YATR	6 cut(s)	20, 96, 193, 302, 396, 589
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	3 cut(s)	191, 394, 587
Fnu4HI	GCNGC	5 cut(s)	102, 360, 377, 505, 703
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	5 cut(s)	102, 360, 377, 505, 703
FspBI	CTAG	4 cut(s)	363, 672, 699, 778
GluI	GCNGC	5 cut(s)	102, 360, 377, 505, 703
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	5 cut(s)	350, 491, 524, 607, 725
Hin1II	CATG	3 cut(s)	195, 398, 591
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	254, 329, 520, 554
HpaII	CCGG	5 cut(s)	350, 491, 524, 607, 725
HphI	GGTGA	4 cut(s)	397, 438, 622, 657
Hpy166II	GTNNAC	2 cut(s)	173, 211
Hpy188I	TCNGA	2 cut(s)	553, 747
Hpy8I	GTNNAC	2 cut(s)	173, 211
HpyAV	CCTTC	4 cut(s)	150, 219, 678, 741
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	2 cut(s)	207, 298
HpyCH4V	TGCA	4 cut(s)	191, 205, 232, 435
HpyF3I	CTNAG	4 cut(s)	106, 152, 336, 486
HpySE526I	ACGT	2 cut(s)	207, 298
Hsp92II	CATG	3 cut(s)	195, 398, 591
Kzo9I	GATC	6 cut(s)	493, 577, 599, 603, 688, 709
LmnI	GCTCC	5 cut(s)	38, 166, 241, 485, 533
Lsp1109I	GCAGC	4 cut(s)	88, 371, 388, 516
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	4 cut(s)	363, 672, 699, 778
MaeII	ACGT	2 cut(s)	207, 298
MaeIII	GTNAC	3 cut(s)	370, 444, 628
MalI	GATC	6 cut(s)	495, 579, 601, 605, 690, 711
MboI	GATC	6 cut(s)	493, 577, 599, 603, 688, 709
MboII	GAAGA	5 cut(s)	17, 138, 287, 317, 540
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	2 cut(s)	493, 688
MhlI	GDGCHC	3 cut(s)	465, 530, 586
MluCI	AATT	5 cut(s)	30, 49, 54, 269, 567
MlyI	GAGTC	3 cut(s)	263, 323, 529
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	9 cut(s)	36, 115, 174, 224, 360, 391, 400, 413, 493
MseI	TTAA	1 cut(s)	53
MspI	CCGG	5 cut(s)	350, 491, 524, 607, 725
MspR9I	CCNGG	2 cut(s)	525, 608
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	345
NciI	CCSGG	2 cut(s)	525, 608
NcoI	CCATGG	1 cut(s)	587
NdeII	GATC	6 cut(s)	493, 577, 599, 603, 688, 709
NlaIII	CATG	3 cut(s)	195, 398, 591
NlaIV	GGNNCC	4 cut(s)	162, 464, 529, 729
NmeAIII	GCCGAG	1 cut(s)	311
NmuCI	GTSAC	2 cut(s)	444, 628
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PctI	GAATGC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	5 cut(s)	103, 361, 378, 506, 704
Ple19I	CGATCG	2 cut(s)	580, 602
PleI	GAGTC	3 cut(s)	262, 323, 528
PpsI	GAGTC	3 cut(s)	262, 323, 528
PpuMI	RGGWCCY	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	400
PspN4I	GGNNCC	4 cut(s)	162, 464, 529, 729
PspPI	GGNCC	4 cut(s)	321, 340, 400, 727
PspPPI	RGGWCCY	1 cut(s)	400
PsuI	RGATCY	2 cut(s)	493, 688
PvuI	CGATCG	2 cut(s)	580, 602
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	5 cut(s)	102, 360, 377, 505, 703
Sau3AI	GATC	6 cut(s)	493, 577, 599, 603, 688, 709
Sau96I	GGNCC	4 cut(s)	321, 340, 400, 727
SchI	GAGTC	3 cut(s)	263, 323, 529
ScrFI	CCNGG	2 cut(s)	525, 608
SduI	GDGCHC	3 cut(s)	465, 530, 586
SfaNI	GCATC	1 cut(s)	192
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	3 cut(s)	340, 400, 727
Sse9I	AATT	5 cut(s)	30, 49, 54, 269, 567
SsiI	CCGC	4 cut(s)	137, 343, 438, 703
SspMI	CTAG	4 cut(s)	363, 672, 699, 778
StyD4I	CCNGG	2 cut(s)	523, 606
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	2 cut(s)	210, 301
TaqI	TCGA	2 cut(s)	216, 602
TasI	AATT	5 cut(s)	30, 49, 54, 269, 567
TauI	GCSGC	1 cut(s)	705
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TseFI	GTSAC	2 cut(s)	444, 628
TseI	GCWGC	4 cut(s)	101, 359, 376, 504
Tsp45I	GTSAC	2 cut(s)	444, 628
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	527
VpaK11BI	GGWCC	3 cut(s)	340, 400, 727
XapI	RAATTY	2 cut(s)	30, 269
XspI	CTAG	4 cut(s)	363, 672, 699, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.