Rh4CG274000

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014880
Physical Location & Seq
Reverse (-)
52863768 .. 52870175
6408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG274000.1

Sequence Viewer

Length: 366 bp
ATGCCGTGTGGGAGGGGATGGCTGCGCTCAGGGGATGAGGACTTAAACCACCTTTTCTTCTCCTGCGCCGTTGCTACAAATGTTTGGCGCTCTGCTGGCATTACCAATACAGATTTCCAAAACTTTGAAGAATGGTTTCTTTCCTGGTTCAGGAAGGATTACCAAAAGTCTACTACTGAAAATCTTCTCCTTCTTTGCTGGAAAATTTGGGAGTTTGTTTTCCTGTTCCCCGGCACTGCAAATACACCTGGGTATAAAATGGATGAACCACATGCTAATATGCTGTTCAATTTTGGAAGTTCAAGGCAGTGTGTTCATACTCATTATCTTGTTGAAATCTCGAGTAATAATTCTCGCGGCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

121

Amino Acids

14.1

Weight (kDa)

6.04

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 170
AccII CGCG 1 cut(s) 357
AciI CCGC 1 cut(s) 357
AcsI RAATTY 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 4 cut(s) 128, 289, 303, 335
AjnI CCWGG 2 cut(s) 143, 247
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 1 cut(s) 363
AluI AGCT 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 340
ApeKI GCWGC 2 cut(s) 22, 360
ApoI RAATTY 1 cut(s) 204
Asp700I GAANNNNTTC 2 cut(s) 135, 183
AspLEI GCGC 3 cut(s) 27, 68, 90
AsuC2I CCSGG 1 cut(s) 231
AvaI CYCGRG 1 cut(s) 340
BbvI GCAGC 1 cut(s) 9
BccI CCATC 1 cut(s) 12
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 145, 249
BcnI CCSGG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 91
BisI GCNGC 3 cut(s) 23, 358, 361
BlsI GCNGC 3 cut(s) 24, 359, 362
Bme1390I CCNGG 3 cut(s) 145, 231, 249
BmeT110I CYCGRG 1 cut(s) 340
BmrFI CCNGG 3 cut(s) 145, 231, 249
Bpu10I CCTNAGC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 229, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 150
BseBI CCWGG 2 cut(s) 145, 249
BseDI CCNNGG 2 cut(s) 229, 248
BseGI GGATG 3 cut(s) 23, 40, 268
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 340
BspACI CCGC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 41
BspFNI CGCG 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 229, 248
Bst2UI CCWGG 2 cut(s) 145, 249
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 28
BstENI CCTNNNNNAGG 1 cut(s) 148
BstF5I GGATG 3 cut(s) 23, 40, 268
BstFNI CGCG 1 cut(s) 357
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 3 cut(s) 27, 68, 90
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 2 cut(s) 145, 249
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 143, 229, 247
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 9
BtsCI GGATG 3 cut(s) 23, 40, 268
BtsI GCAGTG 2 cut(s) 234, 314
BtsIMutI CAGTG 2 cut(s) 234, 314
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 3 cut(s) 27, 68, 90
CviAII CATG 1 cut(s) 272
CviJI RGCY 2 cut(s) 22, 363
CviKI_1 RGCY 2 cut(s) 22, 363
DdeI CTNAG 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 143, 247
FaeI CATG 1 cut(s) 275
FaiI YATR 4 cut(s) 255, 273, 281, 318
FatI CATG 1 cut(s) 271
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 3 cut(s) 23, 358, 361
FokI GGATG 3 cut(s) 30, 47, 275
Fsp4HI GCNGC 3 cut(s) 23, 358, 361
GlaI GCGC 3 cut(s) 26, 67, 89
GluI GCNGC 3 cut(s) 23, 358, 361
HaeII RGCGCY 1 cut(s) 91
HapII CCGG 1 cut(s) 231
HhaI GCGC 3 cut(s) 27, 68, 90
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 3 cut(s) 25, 66, 88
HinP1I GCGC 3 cut(s) 25, 66, 88
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 171
Hpy188III TCNNGA 2 cut(s) 151, 340
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 148, 200
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 28
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 3 cut(s) 25, 66, 88
Lsp1109I GCAGC 1 cut(s) 9
MboII GAAGA 3 cut(s) 49, 140, 176
MluCI AATT 3 cut(s) 204, 289, 349
MnlI CCTC 2 cut(s) 6, 31
MroXI GAANNNNTTC 2 cut(s) 135, 183
MseI TTAA 1 cut(s) 44
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 3 cut(s) 145, 231, 249
MvaI CCWGG 2 cut(s) 145, 249
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 231
NlaIII CATG 1 cut(s) 275
NspI RCATGY 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 340
PdmI GAANNNNTTC 2 cut(s) 135, 183
PkrI GCNGC 3 cut(s) 24, 359, 362
Psp6I CCWGG 2 cut(s) 143, 247
PspGI CCWGG 2 cut(s) 143, 247
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 3 cut(s) 23, 358, 361
ScrFI CCNGG 3 cut(s) 145, 231, 249
SetI ASST 3 cut(s) 54, 250, 365
Sfr274I CTCGAG 1 cut(s) 340
SlaI CTCGAG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 3 cut(s) 204, 289, 349
SsiI CCGC 1 cut(s) 357
StyD4I CCNGG 3 cut(s) 143, 229, 247
TaqI TCGA 1 cut(s) 341
TasI AATT 3 cut(s) 204, 289, 349
TauI GCSGC 1 cut(s) 360
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 2 cut(s) 241, 314
TseI GCWGC 2 cut(s) 22, 360
TspDTI ATGAA 2 cut(s) 279, 305
TspRI CASTG 2 cut(s) 241, 314
XagI CCTNNNNNAGG 1 cut(s) 148
XapI RAATTY 1 cut(s) 204
XceI RCATGY 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 340
XmiI GTMKAC 1 cut(s) 170
XmnI GAANNNNTTC 2 cut(s) 135, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.