Topless-related protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16830 |
| fragaria_vesca | FvH4_4g18910 FvH4_4g18910 |
| malus_domestica | MD13G1162100.v1.1 MD16G1161900.v1.1 |
| prunus_persica | Prupe.1G129400_v2.0.a1 |
| pyrus_communis | pycom13g13830 |
| rosa_chinensis | RchiOBHm_Chr4g0423811 |
| rosa_laevigata | RLG00000007530 |
| rosa_multiflora | Rmu_sc0003369.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00365920 |
| rosa_rugosa | Rorug04G0190900 |
| rosa_samantha | Rh4AG250300 Rh4BG255600 Rh4CG263700 Rh4DG250000 |
| rosa_wichuraiana | Rw4G021430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1421 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1970 |
| AccB1I | GGYRCC | 2 cut(s) | 2813, 3313 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1348 |
| AccI | GTMKAC | 2 cut(s) | 1187, 2952 |
| AciI | CCGC | 8 cut(s) | 140, 719, 1428, 1915, 2398, 2886, 3060, 3200 |
| AclI | AACGTT | 1 cut(s) | 2233 |
| AclWI | GGATC | 5 cut(s) | 28, 1998, 2252, 2294, 3268 |
| AcsI | RAATTY | 3 cut(s) | 59, 2335, 2497 |
| AcuI | CTGAAG | 3 cut(s) | 355, 518, 3306 |
| AdeI | CACNNNGTG | 1 cut(s) | 707 |
| AfaI | GTAC | 7 cut(s) | 119, 335, 1882, 2919, 3027, 3161, 3197 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1038 |
| AhlI | ACTAGT | 3 cut(s) | 1688, 1877, 3073 |
| AjnI | CCWGG | 4 cut(s) | 995, 1604, 1624, 1710 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 12, 44 |
| Alw21I | GWGCWC | 5 cut(s) | 78, 703, 911, 1640, 2050 |
| Alw26I | GTCTC | 6 cut(s) | 62, 941, 2003, 2580, 2638, 2954 |
| Alw44I | GTGCAC | 2 cut(s) | 74, 1636 |
| AlwI | GGATC | 5 cut(s) | 28, 1998, 2252, 2294, 3268 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 737, 1889, 2383 |
| Ama87I | CYCGRG | 1 cut(s) | 47 |
| AoxI | GGCC | 3 cut(s) | 276, 569, 2424 |
| ApaLI | GTGCAC | 2 cut(s) | 74, 1636 |
| ApoI | RAATTY | 3 cut(s) | 59, 2335, 2497 |
| AseI | ATTAAT | 2 cut(s) | 525, 2106 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2170, 2511, 3000 |
| AspLEI | GCGC | 1 cut(s) | 1501 |
| AspS9I | GGNCC | 4 cut(s) | 601, 710, 1032, 1325 |
| AsuHPI | GGTGA | 9 cut(s) | 172, 304, 413, 795, 813, 993, 1712, 1838, 2744 |
| AsuNHI | GCTAGC | 2 cut(s) | 1945, 3202 |
| AvaI | CYCGRG | 1 cut(s) | 47 |
| AvaII | GGWCC | 4 cut(s) | 601, 710, 1032, 1325 |
| AxyI | CCTNAGG | 1 cut(s) | 2009 |
| BaeGI | GKGCMC | 2 cut(s) | 78, 1640 |
| BanI | GGYRCC | 2 cut(s) | 2813, 3313 |
| BanII | GRGCYC | 5 cut(s) | 631, 911, 1604, 2050, 3282 |
| BauI | CACGAG | 2 cut(s) | 630, 3224 |
| Bbv12I | GWGCWC | 5 cut(s) | 78, 703, 911, 1640, 2050 |
| BbvCI | CCTCAGC | 3 cut(s) | 1890, 1992, 3291 |
| BccI | CCATC | 9 cut(s) | 759, 883, 987, 1259, 1559, 1655, 1691, 3089, 3251 |
| BceAI | ACGGC | 7 cut(s) | 263, 1082, 1230, 1934, 1974, 3126, 3355 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3339, 3373 |
| BciT130I | CCWGG | 4 cut(s) | 997, 1606, 1626, 1712 |
| BciVI | GTATCC | 1 cut(s) | 2119 |
| BclI | TGATCA | 2 cut(s) | 913, 2932 |
| BcoDI | GTCTC | 6 cut(s) | 62, 941, 2003, 2580, 2638, 2954 |
| BcuI | ACTAGT | 3 cut(s) | 1688, 1877, 3073 |
| BfaI | CTAG | 9 cut(s) | 417, 431, 695, 1689, 1878, 1946, 2969, 3074, 3203 |
| BfmI | CTRYAG | 3 cut(s) | 723, 729, 1105 |
| BfoI | RGCGCY | 1 cut(s) | 1502 |
| BfuI | GTATCC | 1 cut(s) | 2119 |
| BmcAI | AGTACT | 1 cut(s) | 119 |
| Bme1390I | CCNGG | 4 cut(s) | 997, 1606, 1626, 1712 |
| Bme18I | GGWCC | 4 cut(s) | 601, 710, 1032, 1325 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1038 |
| BmeT110I | CYCGRG | 1 cut(s) | 47 |
| BmgT120I | GGNCC | 4 cut(s) | 601, 710, 1032, 1325 |
| BmiI | GGNNCC | 9 cut(s) | 1034, 1603, 2085, 2344, 2396, 2815, 2871, 2898, 3315 |
| BmrFI | CCNGG | 4 cut(s) | 997, 1606, 1626, 1712 |
| BmrI | ACTGGG | 1 cut(s) | 834 |
| BmtI | GCTAGC | 2 cut(s) | 1949, 3206 |
| BmuI | ACTGGG | 1 cut(s) | 834 |
| BpmI | CTGGAG | 2 cut(s) | 104, 1588 |
| Bpu10I | CCTNAGC | 4 cut(s) | 273, 1890, 1992, 3291 |
| BpuEI | CTTGAG | 1 cut(s) | 1939 |
| BsaBI | GATNNNNATC | 1 cut(s) | 195 |
| BsaI | GGTCTC | 2 cut(s) | 62, 2003 |
| BsaJI | CCNNGG | 5 cut(s) | 566, 1605, 1625, 1956, 2079 |
| BsaWI | WCCGGW | 3 cut(s) | 655, 939, 2940 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 77, 107, 673, 703, 2119, 2149, 3297, 3327 |
| Bse1I | ACTGG | 8 cut(s) | 27, 294, 644, 840, 2247, 2630, 2773, 3063 |
| Bse21I | CCTNAGG | 1 cut(s) | 2009 |
| Bse3DI | GCAATG | 2 cut(s) | 2407, 2520 |
| Bse8I | GATNNNNATC | 1 cut(s) | 195 |
| BseBI | CCWGG | 4 cut(s) | 997, 1606, 1626, 1712 |
| BseDI | CCNNGG | 5 cut(s) | 566, 1605, 1625, 1956, 2079 |
| BseJI | GATNNNNATC | 1 cut(s) | 195 |
| BseMI | GCAATG | 2 cut(s) | 2407, 2520 |
| BseMII | CTCAG | 4 cut(s) | 1881, 1983, 2014, 3282 |
| BseNI | ACTGG | 8 cut(s) | 27, 294, 644, 840, 2247, 2630, 2773, 3063 |
| BseRI | GAGGAG | 3 cut(s) | 606, 681, 2889 |
| BseSI | GKGCMC | 2 cut(s) | 78, 1640 |
| BseYI | CCCAGC | 1 cut(s) | 1136 |
| BsgI | GTGCAG | 5 cut(s) | 930, 2396, 3018, 3069, 3206 |
| BshFI | GGCC | 3 cut(s) | 278, 571, 2426 |
| BshNI | GGYRCC | 2 cut(s) | 2813, 3313 |
| BsiHKAI | GWGCWC | 5 cut(s) | 78, 703, 911, 1640, 2050 |
| BsiHKCI | CYCGRG | 1 cut(s) | 47 |
| BsiSI | CCGG | 4 cut(s) | 656, 940, 2346, 2941 |
| BslFI | GGGAC | 3 cut(s) | 164, 1699, 2474 |
| BsmAI | GTCTC | 6 cut(s) | 62, 941, 2003, 2580, 2638, 2954 |
| BsmBI | CGTCTC | 1 cut(s) | 941 |
| BsmFI | GGGAC | 3 cut(s) | 164, 1699, 2474 |
| BsmI | GAATGC | 5 cut(s) | 757, 1388, 2349, 3000, 3002 |
| BsnI | GGCC | 3 cut(s) | 278, 571, 2426 |
| Bso31I | GGTCTC | 2 cut(s) | 62, 2003 |
| BsoBI | CYCGRG | 1 cut(s) | 47 |
| Bsp1286I | GDGCHC | 8 cut(s) | 78, 631, 703, 911, 1604, 1640, 2050, 3282 |
| Bsp1407I | TGTACA | 1 cut(s) | 333 |
| Bsp143I | GATC | 8 cut(s) | 33, 913, 1333, 2003, 2257, 2299, 2932, 3260 |
| Bsp19I | CCATGG | 1 cut(s) | 2079 |
| BspACI | CCGC | 8 cut(s) | 140, 719, 1428, 1915, 2398, 2886, 3060, 3200 |
| BspANI | GGCC | 3 cut(s) | 278, 571, 2426 |
| BspCNI | CTCAG | 4 cut(s) | 1882, 1984, 2013, 3283 |
| BspHI | TCATGA | 2 cut(s) | 916, 1492 |
| BspLI | GGNNCC | 9 cut(s) | 1034, 1603, 2085, 2344, 2396, 2815, 2871, 2898, 3315 |
| BspMAI | CTGCAG | 2 cut(s) | 727, 733 |
| BspOI | GCTAGC | 2 cut(s) | 1949, 3206 |
| BspPI | GGATC | 5 cut(s) | 28, 1998, 2252, 2294, 3268 |
| BspT107I | GGYRCC | 2 cut(s) | 2813, 3313 |
| BspTNI | GGTCTC | 2 cut(s) | 62, 2003 |
| BsrDI | GCAATG | 2 cut(s) | 2407, 2520 |
| BsrGI | TGTACA | 1 cut(s) | 333 |
| BsrI | ACTGG | 8 cut(s) | 27, 294, 644, 840, 2247, 2630, 2773, 3063 |
| BssECI | CCNNGG | 5 cut(s) | 566, 1605, 1625, 1956, 2079 |
| BssMI | GATC | 8 cut(s) | 33, 913, 1333, 2003, 2257, 2299, 2932, 3260 |
| BssNAI | GTATAC | 1 cut(s) | 2953 |
| BssSI | CACGAG | 2 cut(s) | 630, 3224 |
| BssT1I | CCWWGG | 2 cut(s) | 566, 2079 |
| Bst1107I | GTATAC | 1 cut(s) | 2953 |
| Bst2BI | CACGAG | 2 cut(s) | 630, 3224 |
| Bst2UI | CCWGG | 4 cut(s) | 997, 1606, 1626, 1712 |
| Bst4CI | ACNGT | 4 cut(s) | 73, 1655, 2922, 3193 |
| Bst6I | CTCTTC | 3 cut(s) | 48, 657, 1914 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 668, 737, 3013 |
| BstAUI | TGTACA | 1 cut(s) | 333 |
| BstC8I | GCNNGC | 6 cut(s) | 512, 723, 1947, 2886, 3033, 3204 |
| BstDEI | CTNAG | 9 cut(s) | 273, 1384, 1890, 1992, 2000, 2009, 3134, 3291, 3375 |
| BstDSI | CCRYGG | 2 cut(s) | 1956, 2079 |
| BstEII | GGTNACC | 3 cut(s) | 999, 2278, 2750 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1040 |
| BstH2I | RGCGCY | 1 cut(s) | 1502 |
| BstHHI | GCGC | 1 cut(s) | 1501 |
| BstKTI | GATC | 8 cut(s) | 36, 916, 1336, 2006, 2260, 2302, 2935, 3263 |
| BstMAI | GTCTC | 6 cut(s) | 62, 941, 2003, 2580, 2638, 2954 |
| BstMBI | GATC | 8 cut(s) | 33, 913, 1333, 2003, 2257, 2299, 2932, 3260 |
| BstNI | CCWGG | 4 cut(s) | 997, 1606, 1626, 1712 |
| BstNSI | RCATGY | 1 cut(s) | 992 |
| BstPI | GGTNACC | 3 cut(s) | 999, 2278, 2750 |
| BstSCI | CCNGG | 4 cut(s) | 995, 1604, 1624, 1710 |
| BstSFI | CTRYAG | 3 cut(s) | 723, 729, 1105 |
| BstSLI | GKGCMC | 2 cut(s) | 78, 1640 |
| BstX2I | RGATCY | 3 cut(s) | 2003, 2299, 3260 |
| BstYI | RGATCY | 3 cut(s) | 2003, 2299, 3260 |
| BstZ17I | GTATAC | 1 cut(s) | 2953 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2009 |
| BsuI | GTATCC | 1 cut(s) | 2119 |
| BsuRI | GGCC | 3 cut(s) | 278, 571, 2426 |
| BtgI | CCRYGG | 2 cut(s) | 1956, 2079 |
| BtsI | GCAGTG | 3 cut(s) | 1637, 2427, 3014 |
| BtsIMutI | CAGTG | 5 cut(s) | 1637, 1660, 2427, 3014, 3090 |
| Cac8I | GCNNGC | 6 cut(s) | 512, 723, 1947, 2886, 3033, 3204 |
| CaiI | CAGNNNCTG | 3 cut(s) | 737, 1889, 2383 |
| CciI | TCATGA | 2 cut(s) | 916, 1492 |
| CfoI | GCGC | 1 cut(s) | 1501 |
| Cfr13I | GGNCC | 4 cut(s) | 601, 710, 1032, 1325 |
| Csp6I | GTAC | 7 cut(s) | 118, 334, 1881, 2918, 3026, 3160, 3196 |
| CviQI | GTAC | 7 cut(s) | 118, 334, 1881, 2918, 3026, 3160, 3196 |
| DdeI | CTNAG | 9 cut(s) | 273, 1384, 1890, 1992, 2000, 2009, 3134, 3291, 3375 |
| DpnI | GATC | 8 cut(s) | 35, 915, 1335, 2005, 2259, 2301, 2934, 3262 |
| DpnII | GATC | 8 cut(s) | 33, 913, 1333, 2003, 2257, 2299, 2932, 3260 |
| DraI | TTTAAA | 2 cut(s) | 537, 858 |
| DraIII | CACNNNGTG | 1 cut(s) | 707 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1970 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1038 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1970 |
| Eam1104I | CTCTTC | 3 cut(s) | 48, 657, 1914 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1038 |
| EarI | CTCTTC | 3 cut(s) | 48, 657, 1914 |
| EciI | GGCGGA | 2 cut(s) | 708, 3049 |
| Ecl136II | GAGCTC | 2 cut(s) | 909, 2048 |
| Eco130I | CCWWGG | 2 cut(s) | 566, 2079 |
| Eco24I | GRGCYC | 5 cut(s) | 631, 911, 1604, 2050, 3282 |
| Eco31I | GGTCTC | 2 cut(s) | 62, 2003 |
| Eco47I | GGWCC | 4 cut(s) | 601, 710, 1032, 1325 |
| Eco53kI | GAGCTC | 2 cut(s) | 909, 2048 |
| Eco57I | CTGAAG | 3 cut(s) | 355, 518, 3306 |
| Eco81I | CCTNAGG | 1 cut(s) | 2009 |
| Eco88I | CYCGRG | 1 cut(s) | 47 |
| Eco91I | GGTNACC | 3 cut(s) | 999, 2278, 2750 |
| EcoICRI | GAGCTC | 2 cut(s) | 909, 2048 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1040 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1325 |
| EcoO65I | GGTNACC | 3 cut(s) | 999, 2278, 2750 |
| EcoRII | CCWGG | 4 cut(s) | 995, 1604, 1624, 1710 |
| EcoT14I | CCWWGG | 2 cut(s) | 566, 2079 |
| EcoT22I | ATGCAT | 3 cut(s) | 2522, 2851, 3002 |
| EcoT38I | GRGCYC | 5 cut(s) | 631, 911, 1604, 2050, 3282 |
| ErhI | CCWWGG | 2 cut(s) | 566, 2079 |
| Esp3I | CGTCTC | 1 cut(s) | 941 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 203, 235 |
| FaqI | GGGAC | 3 cut(s) | 164, 1699, 2474 |
| FauI | CCCGC | 4 cut(s) | 133, 1922, 2893, 3207 |
| FbaI | TGATCA | 2 cut(s) | 913, 2932 |
| FblI | GTMKAC | 2 cut(s) | 1187, 2952 |
| FriOI | GRGCYC | 5 cut(s) | 631, 911, 1604, 2050, 3282 |
| FspBI | CTAG | 9 cut(s) | 417, 431, 695, 1689, 1878, 1946, 2969, 3074, 3203 |
| GlaI | GCGC | 1 cut(s) | 1500 |
| GsaI | CCCAGC | 1 cut(s) | 1140 |
| GsuI | CTGGAG | 2 cut(s) | 104, 1588 |
| HaeII | RGCGCY | 1 cut(s) | 1502 |
| HaeIII | GGCC | 3 cut(s) | 278, 571, 2426 |
| HapII | CCGG | 4 cut(s) | 656, 940, 2346, 2941 |
| HhaI | GCGC | 1 cut(s) | 1501 |
| Hin6I | GCGC | 1 cut(s) | 1499 |
| HinP1I | GCGC | 1 cut(s) | 1499 |
| HincII | GTYRAC | 3 cut(s) | 958, 2788, 3071 |
| HindII | GTYRAC | 3 cut(s) | 958, 2788, 3071 |
| HindIII | AAGCTT | 3 cut(s) | 132, 479, 1578 |
| HpaII | CCGG | 4 cut(s) | 656, 940, 2346, 2941 |
| HphI | GGTGA | 9 cut(s) | 172, 304, 413, 795, 813, 993, 1712, 1838, 2744 |
| Hpy99I | CGWCG | 2 cut(s) | 284, 319 |
| HpyCH4III | ACNGT | 4 cut(s) | 73, 1655, 2922, 3193 |
| HpyCH4IV | ACGT | 3 cut(s) | 317, 934, 2233 |
| HpyF3I | CTNAG | 9 cut(s) | 273, 1384, 1890, 1992, 2000, 2009, 3134, 3291, 3375 |
| HpySE526I | ACGT | 3 cut(s) | 317, 934, 2233 |
| HspAI | GCGC | 1 cut(s) | 1499 |
| Ksp22I | TGATCA | 2 cut(s) | 913, 2932 |
| Kzo9I | GATC | 8 cut(s) | 33, 913, 1333, 2003, 2257, 2299, 2932, 3260 |
| LmnI | GCTCC | 9 cut(s) | 85, 694, 698, 1607, 1627, 2053, 2116, 2394, 2902 |
| MaeI | CTAG | 9 cut(s) | 417, 431, 695, 1689, 1878, 1946, 2969, 3074, 3203 |
| MaeII | ACGT | 3 cut(s) | 317, 934, 2233 |
| MaeIII | GTNAC | 6 cut(s) | 200, 646, 999, 1951, 2278, 2750 |
| MalI | GATC | 8 cut(s) | 35, 915, 1335, 2005, 2259, 2301, 2934, 3262 |
| MboI | GATC | 8 cut(s) | 33, 913, 1333, 2003, 2257, 2299, 2932, 3260 |
| MfeI | CAATTG | 1 cut(s) | 2016 |
| MflI | RGATCY | 3 cut(s) | 2003, 2299, 3260 |
| MhlI | GDGCHC | 8 cut(s) | 78, 631, 703, 911, 1604, 1640, 2050, 3282 |
| MlyI | GAGTC | 7 cut(s) | 101, 352, 1267, 1712, 1900, 1980, 2956 |
| MmeI | TCCRAC | 1 cut(s) | 3226 |
| Mph1103I | ATGCAT | 3 cut(s) | 2522, 2851, 3002 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2170, 2511, 3000 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1311, 1643, 3155 |
| MspA1I | CMGCKG | 4 cut(s) | 553, 728, 734, 2888 |
| MspI | CCGG | 4 cut(s) | 656, 940, 2346, 2941 |
| MspR9I | CCNGG | 4 cut(s) | 997, 1606, 1626, 1712 |
| MunI | CAATTG | 1 cut(s) | 2016 |
| Mva1269I | GAATGC | 5 cut(s) | 757, 1388, 2349, 3000, 3002 |
| MvaI | CCWGG | 4 cut(s) | 997, 1606, 1626, 1712 |
| NcoI | CCATGG | 1 cut(s) | 2079 |
| NdeII | GATC | 8 cut(s) | 33, 913, 1333, 2003, 2257, 2299, 2932, 3260 |
| NheI | GCTAGC | 2 cut(s) | 1945, 3202 |
| NlaIV | GGNNCC | 9 cut(s) | 1034, 1603, 2085, 2344, 2396, 2815, 2871, 2898, 3315 |
| NmuCI | GTSAC | 2 cut(s) | 999, 2750 |
| NsiI | ATGCAT | 3 cut(s) | 2522, 2851, 3002 |
| NspI | RCATGY | 1 cut(s) | 992 |
| PaeR7I | CTCGAG | 1 cut(s) | 47 |
| PagI | TCATGA | 2 cut(s) | 916, 1492 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 252 |
| PctI | GAATGC | 5 cut(s) | 757, 1388, 2349, 3000, 3002 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2170, 2511, 3000 |
| PfeI | GAWTC | 7 cut(s) | 196, 1226, 1923, 1978, 2171, 2540, 2693 |
| PflFI | GACNNNGTC | 2 cut(s) | 155, 962 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1348 |
| PleI | GAGTC | 7 cut(s) | 100, 352, 1266, 1711, 1900, 1979, 2956 |
| PpsI | GAGTC | 7 cut(s) | 100, 352, 1266, 1711, 1900, 1979, 2956 |
| PpuMI | RGGWCCY | 1 cut(s) | 1325 |
| PshBI | ATTAAT | 2 cut(s) | 525, 2106 |
| PsiI | TTATAA | 1 cut(s) | 1421 |
| Psp124BI | GAGCTC | 2 cut(s) | 911, 2050 |
| Psp1406I | AACGTT | 1 cut(s) | 2233 |
| Psp5II | RGGWCCY | 1 cut(s) | 1325 |
| Psp6I | CCWGG | 4 cut(s) | 995, 1604, 1624, 1710 |
| PspEI | GGTNACC | 3 cut(s) | 999, 2278, 2750 |
| PspFI | CCCAGC | 1 cut(s) | 1136 |
| PspGI | CCWGG | 4 cut(s) | 995, 1604, 1624, 1710 |
| PspN4I | GGNNCC | 9 cut(s) | 1034, 1603, 2085, 2344, 2396, 2815, 2871, 2898, 3315 |
| PspPI | GGNCC | 4 cut(s) | 601, 710, 1032, 1325 |
| PspPPI | RGGWCCY | 1 cut(s) | 1325 |
| PstI | CTGCAG | 2 cut(s) | 727, 733 |
| PstNI | CAGNNNCTG | 3 cut(s) | 737, 1889, 2383 |
| PsuI | RGATCY | 3 cut(s) | 2003, 2299, 3260 |
| PsyI | GACNNNGTC | 2 cut(s) | 155, 962 |
| PvuII | CAGCTG | 3 cut(s) | 553, 728, 734 |
| RsaI | GTAC | 7 cut(s) | 119, 335, 1882, 2919, 3027, 3161, 3197 |
| RsaNI | GTAC | 7 cut(s) | 118, 334, 1881, 2918, 3026, 3160, 3196 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1311, 1643, 3155 |
| SacI | GAGCTC | 2 cut(s) | 911, 2050 |
| Sau3AI | GATC | 8 cut(s) | 33, 913, 1333, 2003, 2257, 2299, 2932, 3260 |
| Sau96I | GGNCC | 4 cut(s) | 601, 710, 1032, 1325 |
| ScaI | AGTACT | 1 cut(s) | 119 |
| SchI | GAGTC | 7 cut(s) | 101, 352, 1267, 1712, 1900, 1980, 2956 |
| ScrFI | CCNGG | 4 cut(s) | 997, 1606, 1626, 1712 |
| SduI | GDGCHC | 8 cut(s) | 78, 631, 703, 911, 1604, 1640, 2050, 3282 |
| SfcI | CTRYAG | 3 cut(s) | 723, 729, 1105 |
| Sfr274I | CTCGAG | 1 cut(s) | 47 |
| SinI | GGWCC | 4 cut(s) | 601, 710, 1032, 1325 |
| SlaI | CTCGAG | 1 cut(s) | 47 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1311, 1643, 3155 |
| SmlI | CTYRAG | 2 cut(s) | 47, 1918 |
| SmoI | CTYRAG | 2 cut(s) | 47, 1918 |
| SpeI | ACTAGT | 3 cut(s) | 1688, 1877, 3073 |
| SsiI | CCGC | 8 cut(s) | 140, 719, 1428, 1915, 2398, 2886, 3060, 3200 |
| SspI | AATATT | 4 cut(s) | 1298, 1537, 1870, 3103 |
| SspMI | CTAG | 9 cut(s) | 417, 431, 695, 1689, 1878, 1946, 2969, 3074, 3203 |
| SstI | GAGCTC | 2 cut(s) | 911, 2050 |
| StyD4I | CCNGG | 4 cut(s) | 995, 1604, 1624, 1710 |
| StyI | CCWWGG | 2 cut(s) | 566, 2079 |
| TaaI | ACNGT | 4 cut(s) | 73, 1655, 2922, 3193 |
| TaiI | ACGT | 3 cut(s) | 320, 937, 2236 |
| TatI | WGTACW | 6 cut(s) | 117, 333, 1880, 2917, 3025, 3159 |
| TauI | GCSGC | 1 cut(s) | 2400 |
| TfiI | GAWTC | 7 cut(s) | 196, 1226, 1923, 1978, 2171, 2540, 2693 |
| TscAI | CASTG | 5 cut(s) | 1637, 1660, 2434, 3014, 3097 |
| TseFI | GTSAC | 2 cut(s) | 999, 2750 |
| Tsp45I | GTSAC | 2 cut(s) | 999, 2750 |
| TspRI | CASTG | 5 cut(s) | 1637, 1660, 2434, 3014, 3097 |
| Tth111I | GACNNNGTC | 2 cut(s) | 155, 962 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1348 |
| VneI | GTGCAC | 2 cut(s) | 74, 1636 |
| VpaK11BI | GGWCC | 4 cut(s) | 601, 710, 1032, 1325 |
| VspI | ATTAAT | 2 cut(s) | 525, 2106 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1040 |
| XapI | RAATTY | 3 cut(s) | 59, 2335, 2497 |
| XceI | RCATGY | 1 cut(s) | 992 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1173, 2110 |
| XhoI | CTCGAG | 1 cut(s) | 47 |
| XmiI | GTMKAC | 2 cut(s) | 1187, 2952 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2170, 2511, 3000 |
| XspI | CTAG | 9 cut(s) | 417, 431, 695, 1689, 1878, 1946, 2969, 3074, 3203 |
| ZrmI | AGTACT | 1 cut(s) | 119 |
| Zsp2I | ATGCAT | 3 cut(s) | 2522, 2851, 3002 |