Prupe.1G138400_v2.0.a1

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
10821596 .. 10823008
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G138400.1

Sequence Viewer

Length: 246 bp
ATGGGACATGTATTATCATTCCACTACGGAAAATTTTACAGGTCTCACAGATACATCAGATGGGCGAAATGCCAGAAATTGAGAAGTAGAAGATGTAAATTTGGACCAAGAATATTTTCAGGATTAAGGCAACAGGAGTTGTTATCTCGTTTGCTCCCTCACATGGCAGAAGAATGTCAAAATACTTTACTTGAGGCTTTGTTCACTTTCTTCCAAGCTCATCAAGAGAGACCATCAAGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.81

Weight (kDa)

10.62

Isoelectric Point (pI)

77.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015698)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 2 cut(s) 32, 98
AfiI CCNNNNNNNGG 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 7
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 2 cut(s) 48, 223
AlwI GGATC 1 cut(s) 234
ApoI RAATTY 2 cut(s) 32, 98
Asp700I GAANNNNTTC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 104
AvaII GGWCC 1 cut(s) 104
BccI CCATC 2 cut(s) 54, 241
BcoDI GTCTC 2 cut(s) 48, 223
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 212
BsaI GGTCTC 2 cut(s) 48, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 2 cut(s) 48, 223
BsmFI GGGAC 1 cut(s) 18
Bso31I GGTCTC 2 cut(s) 48, 223
Bsp143I GATC 1 cut(s) 239
BspPI GGATC 1 cut(s) 234
BspTNI GGTCTC 2 cut(s) 48, 223
BssMI GATC 1 cut(s) 239
BstKTI GATC 1 cut(s) 242
BstMAI GTCTC 2 cut(s) 48, 223
BstMBI GATC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 104
CviAII CATG 2 cut(s) 8, 163
CviJI RGCY 2 cut(s) 197, 218
CviKI_1 RGCY 2 cut(s) 197, 218
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
Eco31I GGTCTC 2 cut(s) 48, 223
Eco47I GGWCC 1 cut(s) 104
FaeI CATG 2 cut(s) 11, 166
FaiI YATR 2 cut(s) 9, 164
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 7, 162
Hin1II CATG 2 cut(s) 11, 166
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 4 cut(s) 120, 224, 237, 243
Hpy8I GTNNAC 1 cut(s) 204
Hsp92II CATG 2 cut(s) 11, 166
Kzo9I GATC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 4 cut(s) 25, 86, 105, 119
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 3 cut(s) 102, 182, 202
MflI RGATCY 1 cut(s) 239
MluCI AATT 3 cut(s) 32, 77, 98
MnlI CCTC 2 cut(s) 168, 187
MroXI GAANNNNTTC 1 cut(s) 115
MseI TTAA 1 cut(s) 125
NdeII GATC 1 cut(s) 239
NlaIII CATG 2 cut(s) 11, 166
NspI RCATGY 1 cut(s) 11
PciI ACATGT 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 115
PscI ACATGT 1 cut(s) 7
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 239
SaqAI TTAA 1 cut(s) 125
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 1 cut(s) 104
SetI ASST 2 cut(s) 44, 220
SinI GGWCC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 3 cut(s) 32, 77, 98
SspI AATATT 1 cut(s) 114
TasI AATT 3 cut(s) 32, 77, 98
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 104
XapI RAATTY 2 cut(s) 32, 98
XceI RCATGY 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.