Rh6BG353900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015698
Physical Location & Seq
Reverse (-)
58462750 .. 58470248
7499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG353900.1

Sequence Viewer

Length: 1746 bp
ATGTGGATACCCAACTGCCCACCGAGCCTTGTTCAGAGACCACCCAACTCTCCTGTGGAGTTGGTGTCGGATCTAATTGATGAGTCTACTAACCAATGGATTCCTAACATTATTCAAGGGATTTTTCAACCATCGGTAGCAGCCAAGATTCTTAGTCTTCCTCTGGGCCATCGAAACCTACTTGATCAGTACTATTGGCATCCGGACCGTAGGGGTTGGTACACGGTCAAGAGTGCATACTGGATTGCTCGGGAGCAGGTCCTAGGGAATGCCCTAGCCTCTTCATCCTACGGTGATCCATTCAAGGAGCTGTGGCGAAAGCTTTGGAAGGCAAGGGTGCCTGGAAAAGTGCATATATGTGCATGGAAGGCTTGCTGCAATTTACTTCCTACTCGTGAAAGACTTACAACTAAAGGTTATGAGGGTGACCTTCAATGCCTCTTATGCCATCATCCTGTTGAAGACTCAGCTCACCTCTTTTGTAAATGTCCTACAGCTACCATGTTGCTGTCCAAAGCTCCCTTTCATTTGCAAAATTCGTTGCTGCCTAATATCGACTTCCGAGAATGGATGTTGGAACAGGCTATACATCTCAAAATGGAGGTGTTTGAAAAGCTGTTGATGCTTATCTGGGGACTGTGGAAAAATAGAAACTCAAAATTATGGGAGGGCAAGGCCAGTGCGGCCTCTGAGATTTTCTTCAGTTGTGTTACTTGGTTGGAGGAGTTCCAACAGGCCAGGAAGTCTGATGCGGTCATCCAGGAGCAGGTCAGTAAGGTCTGGAGTCCAGCAGGTAATACTGCACTTACTCTAAATGTGGATGGTGCATTTCTCCCTCAGTTAACAAGAGGAGGACTAGGGGGTGTTCTTCGAAATGCTAGCGCATGCAGTGTTCTCCTGATCAGGAGAAACTTTGGTGATCTCATGGGGACTGCGGAGGATAGTTCTGCAGAGCAAGGTGATGATTTCACTCCTCGAATTGGTAATGACTATCAAGCAATGATTCCACCCCTGCGTGAAGGGACTATATTAAGTATTGAAGAAGCAGAAGACATATTTCCACCTTGCAGTGTTATTGAAAAGTATACATTTCTCCTTGGACAATATATATTTGGGAAAAATCTTAGCCTGGTGACGAGATTTGTTGGAAATAAGAACATGAAGGAAATTCAAGCTCTCTACTATGGAGAGTTCTATGCTTCTGATGAATATAGAAGATGGTCAGAGTGGGGAAAGTGGAGAGGTAAACGCTGTATATTTGGGGAAAAACTATTTACATATTGTAGGCTGAAGGAATTGTTGTCCCGGTTGTTGCCATGTGTGTCGAAGCGATGCCAAGATGTGTTGATGGAGATTTCTAGAAATTTTATAAAGGAAAAGATTTCCTTTGAAGACTACATATTCAAGTTGAAGGATTCTGTTGGTCTTCTCTTGCTTATTGAAGCAGTTGGTATTCGAAAAGTAGGGAAGGAAAACCTTACAAGCACTGCTTTTGAGGCAATATCGTCTGGCAAAGATTGGTCCTCTGTTACACCTGCAGAAATTCTTAAGTTTCTAACAAGCTTCAAGCGGTTAAGGAAAGCTCGAATGAATGCTCGATGGAAAGCTTTTTTCTGGGAAGCTGTTTGGCCCCGCCTATTAACAAGAGGATGGCAATCCCAGCAACTAAAGAGTCGTCGCATGAGACGCAGTCTGAATACATCTTTGATATTTCTTGTACCAACAAGTTTTCATGGAGACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

581

Amino Acids

66.79

Weight (kDa)

9.18

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 74 - 167 7.3e-15 zinc-binding in reverse transcriptase
DUF7952 PF25826 358 - 485 1.1e-48 Domain of unknown function (DUF7952)
DUF7650 PF24662 513 - 575 9.1e-17 Domain of unknown function (DUF7650)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00061
prunus_persica Prupe.1G138400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293231
rosa_laevigata RLG00000011966 RLG00000011967
rosa_multiflora Rmu_ssc0000162.1_g000023
rosa_roxburghii Rroxscaffold_7G00174330 Rroxscaffold_7G00174340
rosa_rugosa Rorug06G0233500.1
rosa_samantha Rh6AG346500 Rh6BG353800 Rh6BG353900 Rh6CG360300 Rh6DG346600 Rh6DG346700
rosa_wichuraiana Rw6G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1370
AarI CACCTGC 1 cut(s) 1543
Acc36I ACCTGC 4 cut(s) 247, 757, 782, 1543
AccB1I GGYRCC 1 cut(s) 337
AccI GTMKAC 2 cut(s) 86, 1085
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 5 cut(s) 683, 752, 935, 1570, 1633
AclWI GGATC 2 cut(s) 78, 290
AcsI RAATTY 4 cut(s) 535, 1167, 1363, 1542
AcuI CTGAAG 2 cut(s) 685, 1310
AfaI GTAC 3 cut(s) 191, 221, 1719
AfiI CCNNNNNNNGG 2 cut(s) 766, 980
AflII CTTAAG 1 cut(s) 1547
AjnI CCWGG 4 cut(s) 340, 737, 759, 1128
Alw26I GTCTC 3 cut(s) 31, 1678, 1731
AlwI GGATC 2 cut(s) 78, 290
Ama87I CYCGRG 1 cut(s) 249
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 5 cut(s) 166, 675, 684, 735, 1628
ApeKI GCWGC 3 cut(s) 140, 375, 544
ApoI RAATTY 4 cut(s) 535, 1167, 1363, 1542
AspA2I CCTAGG 1 cut(s) 262
AspLEI GCGC 1 cut(s) 884
AspS9I GGNCC 5 cut(s) 166, 205, 259, 1521, 1629
AsuC2I CCSGG 1 cut(s) 1306
AsuHPI GGTGA 6 cut(s) 305, 437, 464, 929, 971, 1144
AsuII TTCGAA 2 cut(s) 871, 1456
AsuNHI GCTAGC 1 cut(s) 878
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 3 cut(s) 205, 259, 1521
AvrII CCTAGG 1 cut(s) 262
BanI GGYRCC 1 cut(s) 337
BauI CACGAG 1 cut(s) 393
BbsI GAAGAC 5 cut(s) 149, 468, 1056, 1398, 1418
BbvI GCAGC 3 cut(s) 152, 362, 531
BccI CCATC 8 cut(s) 139, 177, 456, 815, 1212, 1342, 1593, 1644
BciT130I CCWGG 4 cut(s) 342, 739, 761, 1130
BclI TGATCA 2 cut(s) 184, 900
BcnI CCSGG 1 cut(s) 1306
BcoDI GTCTC 3 cut(s) 31, 1678, 1731
BfaI CTAG 5 cut(s) 263, 275, 857, 879, 1359
BfmI CTRYAG 3 cut(s) 492, 948, 1536
BfrI CTTAAG 1 cut(s) 1547
BfuAI ACCTGC 4 cut(s) 247, 757, 782, 1543
BglI GCCNNNNNGGC 1 cut(s) 683
BisI GCNGC 4 cut(s) 141, 376, 545, 684
BlnI CCTAGG 1 cut(s) 262
BlsI GCNGC 4 cut(s) 142, 377, 546, 685
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 5 cut(s) 342, 739, 761, 1130, 1306
Bme18I GGWCC 3 cut(s) 205, 259, 1521
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 5 cut(s) 166, 205, 259, 1521, 1629
BmiI GGNNCC 2 cut(s) 339, 1631
BmrFI CCNGG 5 cut(s) 342, 739, 761, 1130, 1306
BmsI GCATC 4 cut(s) 208, 612, 739, 1322
BmtI GCTAGC 1 cut(s) 882
BpiI GAAGAC 5 cut(s) 149, 468, 1056, 1398, 1418
BpmI CTGGAG 1 cut(s) 802
Bpu14I TTCGAA 2 cut(s) 871, 1456
BpuMI CCSGG 1 cut(s) 1306
BsaBI GATNNNNATC 2 cut(s) 626, 1654
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 262, 1096
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 2 cut(s) 766, 980
Bse1I ACTGG 2 cut(s) 245, 678
Bse3DI GCAATG 1 cut(s) 1005
Bse8I GATNNNNATC 2 cut(s) 626, 1654
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 4 cut(s) 342, 739, 761, 1130
BseDI CCNNGG 2 cut(s) 262, 1096
BseGI GGATG 7 cut(s) 199, 284, 451, 576, 756, 826, 1655
BseJI GATNNNNATC 2 cut(s) 626, 1654
BseLI CCNNNNNNNGG 2 cut(s) 766, 980
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 3 cut(s) 480, 681, 851
BseNI ACTGG 2 cut(s) 245, 678
BseRI GAGGAG 3 cut(s) 737, 864, 963
BseXI GCAGC 3 cut(s) 152, 362, 531
BseYI CCCAGC 1 cut(s) 1659
BsgI GTGCAG 1 cut(s) 786
BshFI GGCC 5 cut(s) 168, 677, 686, 737, 1630
BshNI GGYRCC 1 cut(s) 337
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 2 cut(s) 203, 1306
BslFI GGGAC 4 cut(s) 648, 943, 1036, 1288
BslI CCNNNNNNNGG 2 cut(s) 766, 980
BsmAI GTCTC 3 cut(s) 31, 1678, 1731
BsmBI CGTCTC 1 cut(s) 1678
BsmFI GGGAC 4 cut(s) 648, 943, 1036, 1288
BsmI GAATGC 2 cut(s) 274, 1597
BsnI GGCC 5 cut(s) 168, 677, 686, 737, 1630
Bso31I GGTCTC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 249
Bsp119I TTCGAA 2 cut(s) 871, 1456
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 5 cut(s) 70, 184, 295, 900, 919
BspACI CCGC 5 cut(s) 683, 752, 935, 1570, 1633
BspANI GGCC 5 cut(s) 168, 677, 686, 737, 1630
BspCNI CTCAG 3 cut(s) 479, 682, 850
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 339, 1631
BspMAI CTGCAG 2 cut(s) 952, 1540
BspMI ACCTGC 4 cut(s) 247, 757, 782, 1543
BspOI GCTAGC 1 cut(s) 882
BspPI GGATC 2 cut(s) 78, 290
BspT104I TTCGAA 2 cut(s) 871, 1456
BspT107I GGYRCC 1 cut(s) 337
BspTI CTTAAG 1 cut(s) 1547
BspTNI GGTCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 1005
BsrI ACTGG 2 cut(s) 245, 678
BssECI CCNNGG 2 cut(s) 262, 1096
BssMI GATC 5 cut(s) 70, 184, 295, 900, 919
BssNAI GTATAC 1 cut(s) 1086
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 2 cut(s) 262, 1096
Bst1107I GTATAC 1 cut(s) 1086
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 4 cut(s) 342, 739, 761, 1130
Bst4CI ACNGT 4 cut(s) 209, 226, 293, 639
Bst6I CTCTTC 1 cut(s) 286
BstAFI CTTAAG 1 cut(s) 1547
BstBI TTCGAA 2 cut(s) 871, 1456
BstC8I GCNNGC 3 cut(s) 373, 880, 886
BstDEI CTNAG 5 cut(s) 152, 466, 690, 837, 1124
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 7 cut(s) 199, 284, 451, 576, 756, 826, 1655
BstHHI GCGC 1 cut(s) 884
BstKTI GATC 5 cut(s) 73, 187, 298, 903, 922
BstMAI GTCTC 3 cut(s) 31, 1678, 1731
BstMBI GATC 5 cut(s) 70, 184, 295, 900, 919
BstMWI GCNNNNNNNGC 8 cut(s) 24, 368, 444, 622, 683, 1496, 1660, 1686
BstNI CCWGG 4 cut(s) 342, 739, 761, 1130
BstNSI RCATGY 1 cut(s) 888
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 5 cut(s) 340, 737, 759, 1128, 1304
BstSFI CTRYAG 3 cut(s) 492, 948, 1536
BstV1I GCAGC 3 cut(s) 152, 362, 531
BstV2I GAAGAC 5 cut(s) 149, 468, 1056, 1398, 1418
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BstZ17I GTATAC 1 cut(s) 1086
BsuRI GGCC 5 cut(s) 168, 677, 686, 737, 1630
BtgZI GCGATG 1 cut(s) 1345
BtsCI GGATG 7 cut(s) 199, 284, 451, 576, 756, 826, 1655
BtsI GCAGTG 3 cut(s) 895, 1075, 1485
BtsIMutI CAGTG 4 cut(s) 685, 895, 1075, 1485
BveI ACCTGC 4 cut(s) 247, 757, 782, 1543
Cac8I GCNNGC 3 cut(s) 373, 880, 886
CfoI GCGC 1 cut(s) 884
Cfr13I GGNCC 5 cut(s) 166, 205, 259, 1521, 1629
CpoI CGGWCCG 1 cut(s) 205
CseI GACGC 1 cut(s) 1695
Csp6I GTAC 3 cut(s) 190, 220, 1718
CspI CGGWCCG 1 cut(s) 205
CviAII CATG 8 cut(s) 363, 502, 885, 925, 1159, 1317, 1681, 1733
CviQI GTAC 3 cut(s) 190, 220, 1718
DdeI CTNAG 5 cut(s) 152, 466, 690, 837, 1124
DpnI GATC 5 cut(s) 72, 186, 297, 902, 921
DpnII GATC 5 cut(s) 70, 184, 295, 900, 919
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 262, 1096
Eco31I GGTCTC 1 cut(s) 31
Eco47I GGWCC 3 cut(s) 205, 259, 1521
Eco57I CTGAAG 2 cut(s) 685, 1310
Eco88I CYCGRG 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 425
EcoO109I RGGNCCY 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 425
EcoRII CCWGG 4 cut(s) 340, 737, 759, 1128
EcoT14I CCWWGG 2 cut(s) 262, 1096
ErhI CCWWGG 2 cut(s) 262, 1096
Esp3I CGTCTC 1 cut(s) 1678
FaeI CATG 8 cut(s) 366, 505, 888, 928, 1162, 1320, 1684, 1736
FalI AAGNNNNNCTT 4 cut(s) 1370, 1402, 1474, 1506
FaqI GGGAC 4 cut(s) 648, 943, 1036, 1288
FatI CATG 8 cut(s) 362, 501, 884, 924, 1158, 1316, 1680, 1732
FauI CCCGC 1 cut(s) 1640
FbaI TGATCA 2 cut(s) 184, 900
FblI GTMKAC 2 cut(s) 86, 1085
Fnu4HI GCNGC 4 cut(s) 141, 376, 545, 684
FokI GGATG 7 cut(s) 186, 271, 438, 583, 743, 833, 1662
Fsp4HI GCNGC 4 cut(s) 141, 376, 545, 684
FspBI CTAG 5 cut(s) 263, 275, 857, 879, 1359
GlaI GCGC 1 cut(s) 883
GluI GCNGC 4 cut(s) 141, 376, 545, 684
GsaI CCCAGC 1 cut(s) 1663
GsuI CTGGAG 1 cut(s) 802
HaeIII GGCC 5 cut(s) 168, 677, 686, 737, 1630
HapII CCGG 2 cut(s) 203, 1306
HgaI GACGC 1 cut(s) 1695
HhaI GCGC 1 cut(s) 884
Hin1II CATG 8 cut(s) 366, 505, 888, 928, 1162, 1320, 1684, 1736
Hin6I GCGC 1 cut(s) 882
HinP1I GCGC 1 cut(s) 882
HincII GTYRAC 1 cut(s) 843
HindII GTYRAC 1 cut(s) 843
HindIII AAGCTT 3 cut(s) 320, 1561, 1605
HinfI GANTC 8 cut(s) 83, 100, 148, 464, 784, 1003, 1415, 1672
HpaI GTTAAC 1 cut(s) 843
HpaII CCGG 2 cut(s) 203, 1306
HphI GGTGA 6 cut(s) 305, 437, 464, 929, 971, 1144
Hpy166II GTNNAC 5 cut(s) 87, 222, 843, 1086, 1247
Hpy188I TCNGA 8 cut(s) 36, 70, 563, 691, 748, 1204, 1225, 1695
Hpy188III TCNNGA 8 cut(s) 203, 229, 251, 395, 781, 898, 904, 1359
Hpy8I GTNNAC 5 cut(s) 87, 222, 843, 1086, 1247
Hpy99I CGWCG 1 cut(s) 1680
HpyAV CCTTC 8 cut(s) 322, 361, 440, 1013, 1156, 1285, 1405, 1462
HpyCH4III ACNGT 4 cut(s) 209, 226, 293, 639
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 368, 444, 622, 683, 1496, 1660, 1686
HpyF3I CTNAG 5 cut(s) 152, 466, 690, 837, 1124
Hsp92II CATG 8 cut(s) 366, 505, 888, 928, 1162, 1320, 1684, 1736
HspAI GCGC 1 cut(s) 882
Kpn2I TCCGGA 1 cut(s) 202
Ksp22I TGATCA 2 cut(s) 184, 900
KspAI GTTAAC 1 cut(s) 843
Kzo9I GATC 5 cut(s) 70, 184, 295, 900, 919
LmnI GCTCC 4 cut(s) 253, 307, 523, 763
Lsp1109I GCAGC 3 cut(s) 152, 362, 531
LweI GCATC 4 cut(s) 208, 612, 739, 1322
MaeI CTAG 5 cut(s) 263, 275, 857, 879, 1359
MaeIII GTNAC 4 cut(s) 425, 709, 1132, 1528
MalI GATC 5 cut(s) 72, 186, 297, 902, 921
MboI GATC 5 cut(s) 70, 184, 295, 900, 919
MflI RGATCY 1 cut(s) 70
MluCI AATT 9 cut(s) 75, 379, 535, 659, 978, 1167, 1295, 1363, 1542
MlyI GAGTC 4 cut(s) 92, 458, 793, 1681
MmeI TCCRAC 5 cut(s) 48, 555, 699, 754, 1126
MroI TCCGGA 1 cut(s) 202
MseI TTAA 5 cut(s) 842, 1031, 1548, 1574, 1640
MslI CAYNNNNRTG 1 cut(s) 357
MspCI CTTAAG 1 cut(s) 1547
MspI CCGG 2 cut(s) 203, 1306
MspR9I CCNGG 5 cut(s) 342, 739, 761, 1130, 1306
Mva1269I GAATGC 2 cut(s) 274, 1597
MvaI CCWGG 4 cut(s) 342, 739, 761, 1130
MwoI GCNNNNNNNGC 8 cut(s) 24, 368, 444, 622, 683, 1496, 1660, 1686
NciI CCSGG 1 cut(s) 1306
NdeII GATC 5 cut(s) 70, 184, 295, 900, 919
NheI GCTAGC 1 cut(s) 878
NlaIII CATG 8 cut(s) 366, 505, 888, 928, 1162, 1320, 1684, 1736
NlaIV GGNNCC 2 cut(s) 339, 1631
NmuCI GTSAC 2 cut(s) 425, 1132
NspI RCATGY 1 cut(s) 888
NspV TTCGAA 2 cut(s) 871, 1456
PaeI GCATGC 1 cut(s) 888
PaqCI CACCTGC 1 cut(s) 1543
PctI GAATGC 2 cut(s) 274, 1597
PfeI GAWTC 4 cut(s) 100, 148, 1003, 1415
PflFI GACNNNGTC 1 cut(s) 1689
PfoI TCCNGGA 1 cut(s) 759
PkrI GCNGC 4 cut(s) 142, 377, 546, 685
PleI GAGTC 4 cut(s) 91, 458, 792, 1680
PpsI GAGTC 4 cut(s) 91, 458, 792, 1680
PpuMI RGGWCCY 1 cut(s) 259
PsiI TTATAA 1 cut(s) 1370
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 4 cut(s) 340, 737, 759, 1128
PspEI GGTNACC 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 1659
PspGI CCWGG 4 cut(s) 340, 737, 759, 1128
PspN4I GGNNCC 2 cut(s) 339, 1631
PspPI GGNCC 5 cut(s) 166, 205, 259, 1521, 1629
PspPPI RGGWCCY 1 cut(s) 259
PsrI GAACNNNNNNTAC 2 cut(s) 570, 602
PstI CTGCAG 2 cut(s) 952, 1540
PsuI RGATCY 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 1689
RsaI GTAC 3 cut(s) 191, 221, 1719
RsaNI GTAC 3 cut(s) 190, 220, 1718
RseI CAYNNNNRTG 1 cut(s) 357
Rsr2I CGGWCCG 1 cut(s) 205
RsrII CGGWCCG 1 cut(s) 205
SaqAI TTAA 5 cut(s) 842, 1031, 1548, 1574, 1640
SatI GCNGC 4 cut(s) 141, 376, 545, 684
Sau3AI GATC 5 cut(s) 70, 184, 295, 900, 919
Sau96I GGNCC 5 cut(s) 166, 205, 259, 1521, 1629
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 4 cut(s) 92, 458, 793, 1681
ScrFI CCNGG 5 cut(s) 342, 739, 761, 1130, 1306
SfaNI GCATC 4 cut(s) 208, 612, 739, 1322
SfcI CTRYAG 3 cut(s) 492, 948, 1536
SfiI GGCCNNNNNGGCC 1 cut(s) 683
SfuI TTCGAA 2 cut(s) 871, 1456
SinI GGWCC 3 cut(s) 205, 259, 1521
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 1547
SmoI CTYRAG 1 cut(s) 1547
SphI GCATGC 1 cut(s) 888
Sse9I AATT 9 cut(s) 75, 379, 535, 659, 978, 1167, 1295, 1363, 1542
SsiI CCGC 5 cut(s) 683, 752, 935, 1570, 1633
SspMI CTAG 5 cut(s) 263, 275, 857, 879, 1359
StyD4I CCNGG 5 cut(s) 340, 737, 759, 1128, 1304
StyI CCWWGG 2 cut(s) 262, 1096
TaaI ACNGT 4 cut(s) 209, 226, 293, 639
TaqI TCGA 8 cut(s) 172, 555, 871, 976, 1325, 1456, 1585, 1597
TasI AATT 9 cut(s) 75, 379, 535, 659, 978, 1167, 1295, 1363, 1542
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 4 cut(s) 100, 148, 1003, 1415
Tru1I TTAA 5 cut(s) 842, 1031, 1548, 1574, 1640
Tru9I TTAA 5 cut(s) 842, 1031, 1548, 1574, 1640
TscAI CASTG 4 cut(s) 685, 895, 1075, 1492
TseFI GTSAC 2 cut(s) 425, 1132
TseI GCWGC 3 cut(s) 140, 375, 544
Tsp45I GTSAC 2 cut(s) 425, 1132
TspDTI ATGAA 6 cut(s) 273, 515, 1175, 1221, 1604, 1721
TspRI CASTG 4 cut(s) 685, 895, 1075, 1492
Tth111I GACNNNGTC 1 cut(s) 1689
Vha464I CTTAAG 1 cut(s) 1547
VpaK11BI GGWCC 3 cut(s) 205, 259, 1521
XapI RAATTY 4 cut(s) 535, 1167, 1363, 1542
XbaI TCTAGA 1 cut(s) 1358
XceI RCATGY 1 cut(s) 888
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmaJI CCTAGG 1 cut(s) 262
XmiI GTMKAC 2 cut(s) 86, 1085
XspI CTAG 5 cut(s) 263, 275, 857, 879, 1359
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.