Rh6DG346600

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015698
Physical Location & Seq
Reverse (-)
54865432 .. 54866793
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG346600.1

Sequence Viewer

Length: 1362 bp
ATGCATACTCCTGTTGATTTAGTGACTACCCTGCTCGATCTTAATAAATTTCGATCTGTTGTGCAGATTTCTAGAAATTTTATAAAGGAAAAGATTTCCTTTGAAGACTACATATTCAAGTTGAAGGATTCTGTTGGTCTTCTCTTGCTTATTGAAGCAGTTGGTATTGGAAAAGTAGGGAAGGAAAACCTTACAAGCACTGCTTTTGAGCCAATATCGTCTGGCAAAGATTGGTCCTCTGTTACACCTGCAGAAATTCTTAAGTTTCTAACAAGCTTCAAGCGGTTAAGGAAAGCTCGAATGAATGCTCGATGGAAAGCTTTTTTCTGGGAAGCTGTTTGGCCCCGCCTATTAACAAGAGGATGGCAATCCCAGCAACTAAAGAGTCGTCGCATGAGACGCAGTCTGAATACATCTTTGATATTTCTTGTACCAACAAGTTCGAAAACTTGTACCAACAAGTTTTCATGGAGACTTGTGAAAGGTACTGATTATCATGTCTCGGTCAAAAATATGTTGAAGACTATTGCATCGGACCCAAGTGTCCTTGCGCTCGGTAATGAAGAAGCTGCTGATCCTAACTTGCCAAAGAAGGAAGTACGCCGGTTCCTCGATCCAAGCAGGGAAAGTAGCAGTAGAAATGGAATTACGTTTACGACAGTGGATACTAGTACTCTTCATGGAACAGAACAAAACAAGGTGACAGAACTGAAGAGTTTACCTGTTCAACCTGCCAGTTTAACTCCTCCCTCTAATCTTCTTAGTGCCACCGAAGAAGATGGCAGTGTTTCTGTGGATACTGGAATGAACCATAACATTACCGATCCTGCTCGCAGTCATGAAGAGTCAAGCTGCAGAACTGAAAATATCTCTGATGTTGATGAGTTCCAAAGCCAATCAAACTTGCCATGTCAAAGGGAGGGGCCGGAATTTCAAGTGCATCCACAATACTCATCATCCTCAATTTATGTTGAAAAAGGTGGCCCTAGTATTAACAATGAAGGCAGTGTCACTGAGAATTTCCTCCATAGACAACCATCTCCAGGAACTGCTCAAGCTCGAATATTCATCGACTTGAATGTTTCGTATGTTCCCCCACATGTGGGAAGAGATGAACCCTTCACCGCGGACACAATGAAAAGTATGGATGATTCATATGCAAACAAGTCATCAATTGTGCCTGAAACAGGACAGCAGAAGGTGGAGGAGGTGGAGGTTTATGAAGTTGGGGCTAGTGTAGAAGAGAAGCAGCCTGTTGCTAACAGCCAGAGGAAAAGCACAAGGAGCCGTCCGCTGACGAAAAAAGCCTGGGAAGCTCTGGAAAATGAATTCAGCAGTACAAAGAGGAAGAGAAGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

453

Amino Acids

50.83

Weight (kDa)

8.99

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7952 PF25826 18 - 57 3.1e-08 Domain of unknown function (DUF7952)
DUF7650 PF24662 84 - 180 5.6e-26 Domain of unknown function (DUF7650)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00061
prunus_persica Prupe.1G138400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293231
rosa_laevigata RLG00000011966 RLG00000011967
rosa_multiflora Rmu_ssc0000162.1_g000023
rosa_roxburghii Rroxscaffold_7G00174330 Rroxscaffold_7G00174340
rosa_rugosa Rorug06G0233500.1
rosa_samantha Rh6AG346500 Rh6BG353800 Rh6BG353900 Rh6CG360300 Rh6DG346600 Rh6DG346700
rosa_wichuraiana Rw6G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AarI CACCTGC 1 cut(s) 256
AasI GACNNNNNNGTC 1 cut(s) 542
Acc36I ACCTGC 2 cut(s) 256, 739
AccII CGCG 1 cut(s) 1127
AciI CCGC 5 cut(s) 283, 346, 1125, 1127, 1292
AclWI GGATC 3 cut(s) 569, 608, 818
AcsI RAATTY 6 cut(s) 47, 76, 255, 929, 1018, 1328
AcuI CTGAAG 1 cut(s) 731
AfaI GTAC 6 cut(s) 432, 454, 487, 600, 673, 1339
AfiI CCNNNNNNNGG 4 cut(s) 1043, 1102, 1103, 1187
AflII CTTAAG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 1099
AhlI ACTAGT 1 cut(s) 668
AjnI CCWGG 2 cut(s) 1042, 1307
AluBI AGCT 8 cut(s) 276, 296, 320, 335, 569, 852, 1058, 1316
AluI AGCT 8 cut(s) 276, 296, 320, 335, 569, 852, 1058, 1316
Alw26I GTCTC 3 cut(s) 391, 466, 505
AlwI GGATC 3 cut(s) 569, 608, 818
AlwNI CAGNNNCTG 1 cut(s) 1049
AoxI GGCC 3 cut(s) 341, 923, 982
ApeKI GCWGC 3 cut(s) 569, 852, 1249
ApoI RAATTY 6 cut(s) 47, 76, 255, 929, 1018, 1328
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 5 cut(s) 234, 342, 535, 923, 983
AsuHPI GGTGA 2 cut(s) 712, 1114
AsuII TTCGAA 1 cut(s) 443
AvaII GGWCC 2 cut(s) 234, 535
BbsI GAAGAC 3 cut(s) 111, 131, 527
BbvI GCAGC 3 cut(s) 556, 839, 1261
BccI CCATC 4 cut(s) 306, 357, 773, 1045
BceAI ACGGC 1 cut(s) 1272
BciT130I CCWGG 2 cut(s) 1044, 1309
BciVI GTATCC 2 cut(s) 658, 790
BcoDI GTCTC 3 cut(s) 391, 466, 505
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 4 cut(s) 72, 669, 987, 1233
BfmI CTRYAG 2 cut(s) 249, 853
BfrI CTTAAG 1 cut(s) 260
BfuAI ACCTGC 2 cut(s) 256, 739
BfuI GTATCC 2 cut(s) 658, 790
BisI GCNGC 3 cut(s) 570, 853, 1250
BlsI GCNGC 3 cut(s) 571, 854, 1251
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 2 cut(s) 1044, 1309
Bme18I GGWCC 2 cut(s) 234, 535
BmgT120I GGNCC 5 cut(s) 234, 342, 535, 923, 983
BmiI GGNNCC 5 cut(s) 344, 537, 608, 924, 1286
BmrFI CCNGG 2 cut(s) 1044, 1309
BmsI GCATC 2 cut(s) 539, 949
BpiI GAAGAC 3 cut(s) 111, 131, 527
BpmI CTGGAG 1 cut(s) 1026
Bpu14I TTCGAA 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 1038
BsaBI GATNNNNATC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 1125, 1308
Bsc4I CCNNNNNNNGG 4 cut(s) 1043, 1102, 1103, 1187
Bse118I RCCGGY 1 cut(s) 603
Bse1I ACTGG 2 cut(s) 735, 805
Bse8I GATNNNNATC 1 cut(s) 367
BseBI CCWGG 2 cut(s) 1044, 1309
BseDI CCNNGG 2 cut(s) 1125, 1308
BseGI GGATG 4 cut(s) 368, 940, 956, 1153
BseJI GATNNNNATC 1 cut(s) 367
BseLI CCNNNNNNNGG 4 cut(s) 1043, 1102, 1103, 1187
BseMII CTCAG 1 cut(s) 1005
BseNI ACTGG 2 cut(s) 735, 805
BseRI GAGGAG 2 cut(s) 735, 1220
BseXI GCAGC 3 cut(s) 556, 839, 1261
BseYI CCCAGC 1 cut(s) 372
BsgI GTGCAG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 1127
BshFI GGCC 3 cut(s) 343, 925, 984
BsiSI CCGG 2 cut(s) 604, 926
BslI CCNNNNNNNGG 4 cut(s) 1043, 1102, 1103, 1187
BsmAI GTCTC 3 cut(s) 391, 466, 505
BsmBI CGTCTC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 3 cut(s) 343, 925, 984
Bsp119I TTCGAA 1 cut(s) 443
Bsp143I GATC 5 cut(s) 37, 53, 574, 613, 823
BspACI CCGC 5 cut(s) 283, 346, 1125, 1127, 1292
BspANI GGCC 3 cut(s) 343, 925, 984
BspCNI CTCAG 1 cut(s) 1006
BspFNI CGCG 1 cut(s) 1127
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 5 cut(s) 344, 537, 608, 924, 1286
BspMAI CTGCAG 2 cut(s) 253, 857
BspMI ACCTGC 2 cut(s) 256, 739
BspPI GGATC 3 cut(s) 569, 608, 818
BspT104I TTCGAA 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 603
BsrI ACTGG 2 cut(s) 735, 805
BssAI RCCGGY 1 cut(s) 603
BssECI CCNNGG 2 cut(s) 1125, 1308
BssMI GATC 5 cut(s) 37, 53, 574, 613, 823
Bst2UI CCWGG 2 cut(s) 1044, 1309
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 7 cut(s) 681, 707, 837, 1102, 1236, 1343, 1348
BstAFI CTTAAG 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 832
BstDEI CTNAG 2 cut(s) 761, 1014
BstDSI CCRYGG 1 cut(s) 1125
BstENI CCTNNNNNAGG 1 cut(s) 1185
BstF5I GGATG 4 cut(s) 368, 940, 956, 1153
BstFNI CGCG 1 cut(s) 1127
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 5 cut(s) 40, 56, 577, 616, 826
BstMAI GTCTC 3 cut(s) 391, 466, 505
BstMBI GATC 5 cut(s) 37, 53, 574, 613, 823
BstMWI GCNNNNNNNGC 4 cut(s) 373, 399, 1284, 1313
BstNI CCWGG 2 cut(s) 1044, 1309
BstNSI RCATGY 1 cut(s) 1103
BstSCI CCNGG 2 cut(s) 1042, 1307
BstSFI CTRYAG 2 cut(s) 249, 853
BstUI CGCG 1 cut(s) 1127
BstV1I GCAGC 3 cut(s) 556, 839, 1261
BstV2I GAAGAC 3 cut(s) 111, 131, 527
BsuI GTATCC 2 cut(s) 658, 790
BsuRI GGCC 3 cut(s) 343, 925, 984
BtgI CCRYGG 1 cut(s) 1125
BtsCI GGATG 4 cut(s) 368, 940, 956, 1153
BtsI GCAGTG 3 cut(s) 198, 790, 1012
BtsIMutI CAGTG 5 cut(s) 198, 666, 790, 1011, 1012
BveI ACCTGC 2 cut(s) 256, 739
Cac8I GCNNGC 1 cut(s) 832
CaiI CAGNNNCTG 1 cut(s) 1049
CciI TCATGA 1 cut(s) 838
CfoI GCGC 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 603
Cfr13I GGNCC 5 cut(s) 234, 342, 535, 923, 983
Cfr42I CCGCGG 1 cut(s) 1128
CseI GACGC 1 cut(s) 408
Csp6I GTAC 6 cut(s) 431, 453, 486, 599, 672, 1338
CviAII CATG 7 cut(s) 394, 468, 497, 680, 839, 909, 1100
CviQI GTAC 6 cut(s) 431, 453, 486, 599, 672, 1338
DdeI CTNAG 2 cut(s) 761, 1014
DpnI GATC 5 cut(s) 39, 55, 576, 615, 825
DpnII GATC 5 cut(s) 37, 53, 574, 613, 823
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
Eam1104I CTCTTC 7 cut(s) 681, 707, 837, 1102, 1236, 1343, 1348
EarI CTCTTC 7 cut(s) 681, 707, 837, 1102, 1236, 1343, 1348
Eco47I GGWCC 2 cut(s) 234, 535
Eco57I CTGAAG 1 cut(s) 731
EcoNI CCTNNNNNAGG 1 cut(s) 1185
EcoRI GAATTC 1 cut(s) 1328
EcoRII CCWGG 2 cut(s) 1042, 1307
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 7 cut(s) 397, 471, 500, 683, 842, 912, 1103
FalI AAGNNNNNCTT 4 cut(s) 83, 115, 187, 219
FatI CATG 7 cut(s) 393, 467, 496, 679, 838, 908, 1099
FauI CCCGC 1 cut(s) 353
FauNDI CATATG 1 cut(s) 1156
Fnu4HI GCNGC 3 cut(s) 570, 853, 1250
FokI GGATG 4 cut(s) 375, 927, 943, 1160
Fsp4HI GCNGC 3 cut(s) 570, 853, 1250
FspBI CTAG 4 cut(s) 72, 669, 987, 1233
GlaI GCGC 1 cut(s) 552
GluI GCNGC 3 cut(s) 570, 853, 1250
GsaI CCCAGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 1026
HaeIII GGCC 3 cut(s) 343, 925, 984
HapII CCGG 2 cut(s) 604, 926
HgaI GACGC 1 cut(s) 408
HhaI GCGC 1 cut(s) 553
Hin1II CATG 7 cut(s) 397, 471, 500, 683, 842, 912, 1103
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HindIII AAGCTT 2 cut(s) 274, 318
HinfI GANTC 4 cut(s) 128, 385, 845, 1151
HpaII CCGG 2 cut(s) 604, 926
HphI GGTGA 2 cut(s) 712, 1114
Hpy166II GTNNAC 2 cut(s) 654, 719
Hpy188I TCNGA 3 cut(s) 408, 535, 874
Hpy188III TCNNGA 3 cut(s) 72, 839, 1319
Hpy8I GTNNAC 2 cut(s) 654, 719
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 6 cut(s) 118, 175, 586, 995, 1129, 1192
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4IV ACGT 1 cut(s) 650
HpyCH4V TGCA 7 cut(s) 4, 64, 251, 530, 855, 940, 1160
HpyF10VI GCNNNNNNNGC 4 cut(s) 373, 399, 1284, 1313
HpyF3I CTNAG 2 cut(s) 761, 1014
HpySE526I ACGT 1 cut(s) 650
Hsp92II CATG 7 cut(s) 397, 471, 500, 683, 842, 912, 1103
HspAI GCGC 1 cut(s) 551
KspI CCGCGG 1 cut(s) 1128
Kzo9I GATC 5 cut(s) 37, 53, 574, 613, 823
LmnI GCTCC 1 cut(s) 1284
Lsp1109I GCAGC 3 cut(s) 556, 839, 1261
LweI GCATC 2 cut(s) 539, 949
MaeI CTAG 4 cut(s) 72, 669, 987, 1233
MaeII ACGT 1 cut(s) 650
MaeIII GTNAC 4 cut(s) 22, 241, 700, 1009
MalI GATC 5 cut(s) 39, 55, 576, 615, 825
MboI GATC 5 cut(s) 37, 53, 574, 613, 823
MfeI CAATTG 1 cut(s) 1173
MluCI AATT 9 cut(s) 47, 76, 255, 645, 929, 963, 1018, 1173, 1328
MlyI GAGTC 2 cut(s) 394, 854
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 6 cut(s) 42, 261, 287, 353, 740, 993
MspA1I CMGCKG 2 cut(s) 1127, 1294
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 2 cut(s) 604, 926
MspR9I CCNGG 2 cut(s) 1044, 1309
MunI CAATTG 1 cut(s) 1173
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 2 cut(s) 1044, 1309
MvnI CGCG 1 cut(s) 1127
MwoI GCNNNNNNNGC 4 cut(s) 373, 399, 1284, 1313
NdeI CATATG 1 cut(s) 1156
NdeII GATC 5 cut(s) 37, 53, 574, 613, 823
NlaIII CATG 7 cut(s) 397, 471, 500, 683, 842, 912, 1103
NlaIV GGNNCC 5 cut(s) 344, 537, 608, 924, 1286
NmuCI GTSAC 3 cut(s) 22, 700, 1009
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1103
NspV TTCGAA 1 cut(s) 443
PagI TCATGA 1 cut(s) 838
PaqCI CACCTGC 1 cut(s) 256
PciI ACATGT 1 cut(s) 1099
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 128, 1151
PflFI GACNNNGTC 1 cut(s) 402
PfoI TCCNGGA 1 cut(s) 1042
PkrI GCNGC 3 cut(s) 571, 854, 1251
PleI GAGTC 2 cut(s) 393, 853
PpsI GAGTC 2 cut(s) 393, 853
PscI ACATGT 1 cut(s) 1099
PsiI TTATAA 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 1042, 1307
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 2 cut(s) 1042, 1307
PspN4I GGNNCC 5 cut(s) 344, 537, 608, 924, 1286
PspPI GGNCC 5 cut(s) 234, 342, 535, 923, 983
PstI CTGCAG 2 cut(s) 253, 857
PstNI CAGNNNCTG 1 cut(s) 1049
PsyI GACNNNGTC 1 cut(s) 402
RsaI GTAC 6 cut(s) 432, 454, 487, 600, 673, 1339
RsaNI GTAC 6 cut(s) 431, 453, 486, 599, 672, 1338
SacII CCGCGG 1 cut(s) 1128
SaqAI TTAA 6 cut(s) 42, 261, 287, 353, 740, 993
SatI GCNGC 3 cut(s) 570, 853, 1250
Sau3AI GATC 5 cut(s) 37, 53, 574, 613, 823
Sau96I GGNCC 5 cut(s) 234, 342, 535, 923, 983
ScaI AGTACT 1 cut(s) 673
SchI GAGTC 2 cut(s) 394, 854
ScrFI CCNGG 2 cut(s) 1044, 1309
SfaNI GCATC 2 cut(s) 539, 949
SfcI CTRYAG 2 cut(s) 249, 853
Sfr303I CCGCGG 1 cut(s) 1128
SfuI TTCGAA 1 cut(s) 443
SgrBI CCGCGG 1 cut(s) 1128
SinI GGWCC 2 cut(s) 234, 535
SmlI CTYRAG 2 cut(s) 260, 1053
SmoI CTYRAG 2 cut(s) 260, 1053
SpeI ACTAGT 1 cut(s) 668
Sse9I AATT 9 cut(s) 47, 76, 255, 645, 929, 963, 1018, 1173, 1328
SsiI CCGC 5 cut(s) 283, 346, 1125, 1127, 1292
SspI AATATT 1 cut(s) 1065
SspMI CTAG 4 cut(s) 72, 669, 987, 1233
StyD4I CCNGG 2 cut(s) 1042, 1307
TaaI ACNGT 1 cut(s) 661
TaiI ACGT 1 cut(s) 653
TaqI TCGA 8 cut(s) 36, 52, 298, 310, 443, 612, 1060, 1071
TaqII GACCGA 1 cut(s) 493
TasI AATT 9 cut(s) 47, 76, 255, 645, 929, 963, 1018, 1173, 1328
TatI WGTACW 2 cut(s) 671, 1337
TfiI GAWTC 2 cut(s) 128, 1151
Tru1I TTAA 6 cut(s) 42, 261, 287, 353, 740, 993
Tru9I TTAA 6 cut(s) 42, 261, 287, 353, 740, 993
TscAI CASTG 5 cut(s) 205, 666, 790, 1012, 1018
TseFI GTSAC 3 cut(s) 22, 700, 1009
TseI GCWGC 3 cut(s) 569, 852, 1249
Tsp45I GTSAC 3 cut(s) 22, 700, 1009
TspRI CASTG 5 cut(s) 205, 666, 790, 1012, 1018
Tth111I GACNNNGTC 1 cut(s) 402
Vha464I CTTAAG 1 cut(s) 260
VpaK11BI GGWCC 2 cut(s) 234, 535
XagI CCTNNNNNAGG 1 cut(s) 1185
XapI RAATTY 6 cut(s) 47, 76, 255, 929, 1018, 1328
XbaI TCTAGA 1 cut(s) 71
XceI RCATGY 1 cut(s) 1103
XspI CTAG 4 cut(s) 72, 669, 987, 1233
ZrmI AGTACT 1 cut(s) 673
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.