RLG00000011966

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015698
Physical Location & Seq
Forward (+)
14144404 .. 14145007
604 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011966

Sequence Viewer

Length: 372 bp
ATGAAGGAAATTCAAGCTCTCTACTATGGAGAGTTCTATGCTTCTGATGAATATAGAAGATGGTCAGAGTGGGGAAAGTGGAGAGGTAAACGCTGTATATTTGGGGAAAAACTATTTACATATTGTAGGCTGAAGGAATTGTTGTCCCGGTTGTTGCCATGTGTGTCGAAGCGATGCCAAGATGTGTTGATGGAGAAATTGGTTTCCTTTGAAGACTACATATTCAAGTTGAAGGATTCTGTTGGTCTTCTCTTGCTTATTGAAGCAGTTGGTATTGGAAAAGAAGGGAAGGAAAACCTTACAAGCACTGCTTTTGAGCCAGTATCGTCTGGCAGAGATTGGTCCTCTGTTACGCCTGCAGAAATTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.29

Weight (kDa)

7.59

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7952 PF25826 1 - 93 1.1e-29 Domain of unknown function (DUF7952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00061
prunus_persica Prupe.1G138400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293231
rosa_laevigata RLG00000011966 RLG00000011967
rosa_multiflora Rmu_ssc0000162.1_g000023
rosa_roxburghii Rroxscaffold_7G00174330 Rroxscaffold_7G00174340
rosa_rugosa Rorug06G0233500.1
rosa_samantha Rh6AG346500 Rh6BG353800 Rh6BG353900 Rh6CG360300 Rh6DG346600 Rh6DG346700
rosa_wichuraiana Rw6G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 9, 363
AcuI CTGAAG 1 cut(s) 152
AgsI TTSAA 5 cut(s) 14, 212, 226, 232, 263
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
ApoI RAATTY 2 cut(s) 9, 363
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 148
AvaII GGWCC 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 219, 239
BccI CCATC 2 cut(s) 54, 184
BcnI CCSGG 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 164
BpiI GAAGAC 2 cut(s) 219, 239
BpuMI CCSGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 357
BstV2I GAAGAC 2 cut(s) 219, 239
BtgZI GCGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 357
Cfr13I GGNCC 1 cut(s) 342
CviAII CATG 1 cut(s) 159
CviJI RGCY 3 cut(s) 17, 130, 319
CviKI_1 RGCY 3 cut(s) 17, 130, 319
Eco47I GGWCC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 152
FaeI CATG 1 cut(s) 162
FaiI YATR 7 cut(s) 27, 39, 54, 98, 121, 160, 221
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 1 cut(s) 130
FatI CATG 1 cut(s) 158
HapII CCGG 1 cut(s) 148
Hin1II CATG 1 cut(s) 162
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 46, 67
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 4 cut(s) 127, 226, 278, 283
HpyCH4V TGCA 1 cut(s) 359
Hsp92II CATG 1 cut(s) 162
LpnPI CCDG 3 cut(s) 161, 315, 333
LweI GCATC 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 349
MboII GAAGA 3 cut(s) 69, 224, 239
MluCI AATT 4 cut(s) 9, 137, 197, 363
MnlI CCTC 2 cut(s) 77, 355
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 148
NciI CCSGG 1 cut(s) 148
NlaIII CATG 1 cut(s) 162
PfeI GAWTC 1 cut(s) 236
PspPI GGNCC 1 cut(s) 342
PstI CTGCAG 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 148
SetI ASST 3 cut(s) 19, 88, 300
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 342
Sse9I AATT 4 cut(s) 9, 137, 197, 363
StyD4I CCNGG 1 cut(s) 146
TaqI TCGA 1 cut(s) 167
TasI AATT 4 cut(s) 9, 137, 197, 363
TfiI GAWTC 1 cut(s) 236
TscAI CASTG 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 17, 63
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 2 cut(s) 9, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.