RLG00000011967

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015698
Physical Location & Seq
Forward (+)
14145055 .. 14146081
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011967

Sequence Viewer

Length: 924 bp
ATGGAAAGCTTTTTTCTGGGAGGCTGTTTGGCCCCGCCTATTAACAAGAGGATCGGATGGCACTCCCAGCAAGTAAAGAGTCGTCGCATGAGACGTAGTTTGAATACATCTTTGATATTTCTTGTACCAACAAGTTCGAAAACTTGTACCAACAAGTTTTCATGGAGACTTGTGAAAGGTACTCATTATCATGTCTCGGTCAAAAATATGTTGAAGACTGTTGCATCGGACCCAAGTGTCCTTGCGCTCGGTAATGAAGAAGCTGCTGATCCTAACTTGCCAAAGAAGGAAGTATGCCGGTTCCTCGATCCAAGCAGAGAAAGTAGCAGTAGAAATGGAATTACGTTTACGACAGTGGATACTAGTACTCGTCATGGAACAGAACAAAACAAGGTGACAGAACTGAAGAGTTTACCTGTTCAACCTGCCAGTTTAGCTCTTCCCTCTAATCTTCTTAGTGCCACCGAAGAAGATGGCAGTGTTTCTGTGGATACTGGAATGAACCATAACATTACCGATCCTGCTCGCAGTCATGAAGAGTCAAGCTGCAGAACTGAAAATATCTCTGATGTGGCCCTAGTATTAACAATGAAGGCACCTTCTCTAGGAACTGCTCAAGCTCGAATATTCATCGACTTGAATGTTTCGTATGTTCCCCCACATGTGGGAAGAGATGAACCCTGCACCGCGGACACAATGAAAAGTATGGATGATTCATATGCAAACAAGTCATCAATTGTGCCTGAAACCGGACGGCAGAAGGTGGAGGAGGTGGAGGTTTATGAAGTTGGGGATAGTGTAGAAGAGCAGCAGCCTGTTGCTAACAGCCAGAGGAAAAGCACAAGGAGCCGTCCGCTGACGAAAAAAGCCTGGGAAGCTCTTGAAAATGAATTCAGCAGTACAAAGAGGAAGAGAAGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

33.97

Weight (kDa)

8.74

Isoelectric Point (pI)

65.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7650 PF24662 19 - 78 1.1e-11 Domain of unknown function (DUF7650)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00061
prunus_persica Prupe.1G138400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293231
rosa_laevigata RLG00000011966 RLG00000011967
rosa_multiflora Rmu_ssc0000162.1_g000023
rosa_roxburghii Rroxscaffold_7G00174330 Rroxscaffold_7G00174340
rosa_rugosa Rorug06G0233500.1
rosa_samantha Rh6AG346500 Rh6BG353800 Rh6BG353900 Rh6CG360300 Rh6DG346600 Rh6DG346700
rosa_wichuraiana Rw6G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 595
AccII CGCG 1 cut(s) 689
AciI CCGC 4 cut(s) 35, 687, 689, 854
AclWI GGATC 4 cut(s) 59, 263, 302, 512
AcsI RAATTY 1 cut(s) 890
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 5 cut(s) 126, 148, 181, 367, 901
AfiI CCNNNNNNNGG 4 cut(s) 605, 664, 665, 749
AflIII ACRYGT 1 cut(s) 661
AgsI TTSAA 5 cut(s) 103, 214, 422, 640, 884
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 1 cut(s) 869
AluBI AGCT 6 cut(s) 9, 263, 437, 546, 620, 878
AluI AGCT 6 cut(s) 9, 263, 437, 546, 620, 878
Alw26I GTCTC 3 cut(s) 85, 160, 199
AlwI GGATC 4 cut(s) 59, 263, 302, 512
AoxI GGCC 2 cut(s) 30, 573
ApeKI GCWGC 4 cut(s) 263, 546, 808, 811
ApoI RAATTY 1 cut(s) 890
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 3 cut(s) 31, 229, 574
AsuHPI GGTGA 1 cut(s) 406
AsuII TTCGAA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 595
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 4 cut(s) 250, 533, 820, 823
BccI CCATC 2 cut(s) 51, 467
BceAI ACGGC 2 cut(s) 770, 834
BciT130I CCWGG 1 cut(s) 871
BciVI GTATCC 2 cut(s) 352, 484
BcoDI GTCTC 3 cut(s) 85, 160, 199
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 3 cut(s) 363, 578, 605
BfmI CTRYAG 1 cut(s) 547
BfuAI ACCTGC 1 cut(s) 433
BfuI GTATCC 2 cut(s) 352, 484
BisI GCNGC 4 cut(s) 264, 547, 809, 812
BlsI GCNGC 4 cut(s) 265, 548, 810, 813
BmcAI AGTACT 1 cut(s) 367
Bme1390I CCNGG 1 cut(s) 871
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 31, 229, 574
BmiI GGNNCC 5 cut(s) 33, 231, 302, 597, 848
BmrFI CCNGG 1 cut(s) 871
BmsI GCATC 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 687, 870
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 4 cut(s) 605, 664, 665, 749
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 2 cut(s) 429, 499
BseBI CCWGG 1 cut(s) 871
BseDI CCNNGG 2 cut(s) 687, 870
BseGI GGATG 2 cut(s) 62, 715
BseLI CCNNNNNNNGG 4 cut(s) 605, 664, 665, 749
BseNI ACTGG 2 cut(s) 429, 499
BseRI GAGGAG 1 cut(s) 782
BseXI GCAGC 4 cut(s) 250, 533, 820, 823
BseYI CCCAGC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 667
Bsh1236I CGCG 1 cut(s) 689
BshFI GGCC 2 cut(s) 32, 575
BshNI GGYRCC 1 cut(s) 595
BsiSI CCGG 2 cut(s) 298, 750
BslI CCNNNNNNNGG 4 cut(s) 605, 664, 665, 749
BsmAI GTCTC 3 cut(s) 85, 160, 199
BsmBI CGTCTC 1 cut(s) 85
BsnI GGCC 2 cut(s) 32, 575
Bsp119I TTCGAA 1 cut(s) 137
Bsp143I GATC 4 cut(s) 51, 268, 307, 517
BspACI CCGC 4 cut(s) 35, 687, 689, 854
BspANI GGCC 2 cut(s) 32, 575
BspFNI CGCG 1 cut(s) 689
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 5 cut(s) 33, 231, 302, 597, 848
BspMAI CTGCAG 1 cut(s) 551
BspMI ACCTGC 1 cut(s) 433
BspPI GGATC 4 cut(s) 59, 263, 302, 512
BspQI GCTCTTC 2 cut(s) 444, 798
BspT104I TTCGAA 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 595
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 2 cut(s) 429, 499
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 687, 870
BssMI GATC 4 cut(s) 51, 268, 307, 517
Bst2UI CCWGG 1 cut(s) 871
Bst4CI ACNGT 2 cut(s) 220, 355
Bst6I CTCTTC 7 cut(s) 401, 444, 531, 664, 798, 905, 910
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 1 cut(s) 455
BstDSI CCRYGG 1 cut(s) 687
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 2 cut(s) 62, 715
BstFNI CGCG 1 cut(s) 689
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 4 cut(s) 54, 271, 310, 520
BstMAI GTCTC 3 cut(s) 85, 160, 199
BstMBI GATC 4 cut(s) 51, 268, 307, 517
BstMWI GCNNNNNNNGC 4 cut(s) 67, 434, 846, 875
BstNI CCWGG 1 cut(s) 871
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 1 cut(s) 869
BstSFI CTRYAG 1 cut(s) 547
BstUI CGCG 1 cut(s) 689
BstV1I GCAGC 4 cut(s) 250, 533, 820, 823
BstV2I GAAGAC 1 cut(s) 221
BsuI GTATCC 2 cut(s) 352, 484
BsuRI GGCC 2 cut(s) 32, 575
BtgI CCRYGG 1 cut(s) 687
BtsCI GGATG 2 cut(s) 62, 715
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 2 cut(s) 360, 484
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 526
CciI TCATGA 1 cut(s) 532
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 3 cut(s) 31, 229, 574
Cfr42I CCGCGG 1 cut(s) 690
Csp6I GTAC 5 cut(s) 125, 147, 180, 366, 900
CviAII CATG 6 cut(s) 88, 162, 191, 374, 533, 662
CviQI GTAC 5 cut(s) 125, 147, 180, 366, 900
DdeI CTNAG 1 cut(s) 455
DpnI GATC 4 cut(s) 53, 270, 309, 519
DpnII GATC 4 cut(s) 51, 268, 307, 517
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
Eam1104I CTCTTC 7 cut(s) 401, 444, 531, 664, 798, 905, 910
EarI CTCTTC 7 cut(s) 401, 444, 531, 664, 798, 905, 910
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoRI GAATTC 1 cut(s) 890
EcoRII CCWGG 1 cut(s) 869
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 6 cut(s) 91, 165, 194, 377, 536, 665
FatI CATG 6 cut(s) 87, 161, 190, 373, 532, 661
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 1 cut(s) 718
Fnu4HI GCNGC 4 cut(s) 264, 547, 809, 812
FokI GGATG 2 cut(s) 69, 722
Fsp4HI GCNGC 4 cut(s) 264, 547, 809, 812
FspBI CTAG 3 cut(s) 363, 578, 605
GlaI GCGC 1 cut(s) 246
GluI GCNGC 4 cut(s) 264, 547, 809, 812
GsaI CCCAGC 1 cut(s) 70
HaeIII GGCC 2 cut(s) 32, 575
HapII CCGG 2 cut(s) 298, 750
HhaI GCGC 1 cut(s) 247
Hin1II CATG 6 cut(s) 91, 165, 194, 377, 536, 665
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 3 cut(s) 79, 539, 713
HpaII CCGG 2 cut(s) 298, 750
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 2 cut(s) 348, 413
Hpy188I TCNGA 3 cut(s) 56, 229, 568
Hpy188III TCNNGA 2 cut(s) 533, 881
Hpy8I GTNNAC 2 cut(s) 348, 413
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 4 cut(s) 280, 586, 609, 754
HpyCH4III ACNGT 2 cut(s) 220, 355
HpyCH4IV ACGT 2 cut(s) 94, 344
HpyCH4V TGCA 4 cut(s) 224, 549, 684, 722
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 434, 846, 875
HpyF3I CTNAG 1 cut(s) 455
HpySE526I ACGT 2 cut(s) 94, 344
Hsp92II CATG 6 cut(s) 91, 165, 194, 377, 536, 665
HspAI GCGC 1 cut(s) 245
KspI CCGCGG 1 cut(s) 690
Kzo9I GATC 4 cut(s) 51, 268, 307, 517
LguI GCTCTTC 2 cut(s) 444, 798
LmnI GCTCC 1 cut(s) 846
Lsp1109I GCAGC 4 cut(s) 250, 533, 820, 823
LweI GCATC 1 cut(s) 233
MaeI CTAG 3 cut(s) 363, 578, 605
MaeII ACGT 2 cut(s) 94, 344
MaeIII GTNAC 1 cut(s) 394
MalI GATC 4 cut(s) 53, 270, 309, 519
MboI GATC 4 cut(s) 51, 268, 307, 517
MfeI CAATTG 1 cut(s) 735
MluCI AATT 3 cut(s) 339, 735, 890
MlyI GAGTC 2 cut(s) 88, 548
MseI TTAA 2 cut(s) 42, 584
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 2 cut(s) 689, 856
MspI CCGG 2 cut(s) 298, 750
MspR9I CCNGG 1 cut(s) 871
MunI CAATTG 1 cut(s) 735
MvaI CCWGG 1 cut(s) 871
MvnI CGCG 1 cut(s) 689
MwoI GCNNNNNNNGC 4 cut(s) 67, 434, 846, 875
NdeI CATATG 1 cut(s) 718
NdeII GATC 4 cut(s) 51, 268, 307, 517
NlaIII CATG 6 cut(s) 91, 165, 194, 377, 536, 665
NlaIV GGNNCC 5 cut(s) 33, 231, 302, 597, 848
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 1 cut(s) 665
NspV TTCGAA 1 cut(s) 137
PagI TCATGA 1 cut(s) 532
PciI ACATGT 1 cut(s) 661
PciSI GCTCTTC 2 cut(s) 444, 798
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PfeI GAWTC 1 cut(s) 713
PkrI GCNGC 4 cut(s) 265, 548, 810, 813
PleI GAGTC 2 cut(s) 87, 547
PpsI GAGTC 2 cut(s) 87, 547
PscI ACATGT 1 cut(s) 661
Psp6I CCWGG 1 cut(s) 869
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 869
PspN4I GGNNCC 5 cut(s) 33, 231, 302, 597, 848
PspPI GGNCC 3 cut(s) 31, 229, 574
PstI CTGCAG 1 cut(s) 551
RsaI GTAC 5 cut(s) 126, 148, 181, 367, 901
RsaNI GTAC 5 cut(s) 125, 147, 180, 366, 900
RseI CAYNNNNRTG 1 cut(s) 189
SacII CCGCGG 1 cut(s) 690
SapI GCTCTTC 2 cut(s) 444, 798
SaqAI TTAA 2 cut(s) 42, 584
SatI GCNGC 4 cut(s) 264, 547, 809, 812
Sau3AI GATC 4 cut(s) 51, 268, 307, 517
Sau96I GGNCC 3 cut(s) 31, 229, 574
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 2 cut(s) 88, 548
ScrFI CCNGG 1 cut(s) 871
SfaNI GCATC 1 cut(s) 233
SfcI CTRYAG 1 cut(s) 547
Sfr303I CCGCGG 1 cut(s) 690
SfuI TTCGAA 1 cut(s) 137
SgrBI CCGCGG 1 cut(s) 690
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 615
SmoI CTYRAG 1 cut(s) 615
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 3 cut(s) 339, 735, 890
SsiI CCGC 4 cut(s) 35, 687, 689, 854
SspI AATATT 1 cut(s) 627
SspMI CTAG 3 cut(s) 363, 578, 605
StyD4I CCNGG 1 cut(s) 869
TaaI ACNGT 2 cut(s) 220, 355
TaiI ACGT 2 cut(s) 97, 347
TaqI TCGA 4 cut(s) 137, 306, 622, 633
TaqII GACCGA 1 cut(s) 187
TasI AATT 3 cut(s) 339, 735, 890
TatI WGTACW 2 cut(s) 365, 899
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 2 cut(s) 42, 584
Tru9I TTAA 2 cut(s) 42, 584
TscAI CASTG 2 cut(s) 360, 484
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 4 cut(s) 263, 546, 808, 811
Tsp45I GTSAC 1 cut(s) 394
TspRI CASTG 2 cut(s) 360, 484
VpaK11BI GGWCC 1 cut(s) 229
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 1 cut(s) 890
XceI RCATGY 1 cut(s) 665
XspI CTAG 3 cut(s) 363, 578, 605
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.