Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0015698

Physical Location & Seq

Genomic Coordinates Reverse (-)

58461941 .. 58462408

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG353800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAAGAGTCAAGCTGCAGAACTGAAAATATCTCTGATGTTGATGAGTTCCAAAGCCAATCAAACTTGCCATGTCAAAGGGAGGGGCCGGAATTTCAAGTGCATCCACAATACTCATCATCCTCAATTTATGTTGAAAAAGGTGGCCCTAGGAACTGCTCAAGCTCGAATATTCATCGACTTGAATGTTTCGTATGTTCCCCCACATGTGGGAAGAGATGAACCCTTCACCGCGGACACAATGAATAGTATGGATGATTCATATGCAAACAAGTCATCAATTGTGCCTGAAACAGGACAGCAGAAGGTGGAGGAGGTGGAGGTTTATGAAGTTGGGGCTAGTGTAGAAGAGCAGCAGCCTGTTGCTAACAGCCAGAGGAAAAGCACAAGGAGCCGTCCGCTGACGAAAAAAGCCTGGGAAGCTCTGGAAAATGAATTCAGCAGTACAAAGAGGAAGAGAAGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.46

Weight (kDa)

9.54

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_c6g00061
prunus_persica	Prupe.1G138400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0293231
rosa_laevigata	RLG00000011966 RLG00000011967
rosa_multiflora	Rmu_ssc0000162.1_g000023
rosa_roxburghii	Rroxscaffold_7G00174330 Rroxscaffold_7G00174340
rosa_rugosa	Rorug06G0233500.1
rosa_samantha	Rh6AG346500 Rh6BG353800 Rh6BG353900 Rh6CG360300 Rh6DG346600 Rh6DG346700
rosa_wichuraiana	Rw6G030160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	233
AciI	CCGC	3 cut(s)	231, 233, 398
AcsI	RAATTY	2 cut(s)	91, 434
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	3 cut(s)	208, 209, 293
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	97, 136, 184
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	3 cut(s)	14, 164, 422
AluI	AGCT	3 cut(s)	14, 164, 422
AoxI	GGCC	2 cut(s)	85, 144
ApeKI	GCWGC	3 cut(s)	14, 352, 355
ApoI	RAATTY	2 cut(s)	91, 434
AspA2I	CCTAGG	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	85, 145
AsuHPI	GGTGA	1 cut(s)	220
AvrII	CCTAGG	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	364, 367
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	1 cut(s)	415
BfaI	CTAG	2 cut(s)	149, 339
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	3 cut(s)	15, 353, 356
BlnI	CCTAGG	1 cut(s)	148
BlsI	GCNGC	3 cut(s)	16, 354, 357
Bme1390I	CCNGG	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	85, 145
BmiI	GGNNCC	2 cut(s)	86, 392
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	148, 231, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 209, 293
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	148, 231, 414
BseGI	GGATG	3 cut(s)	102, 118, 259
BseLI	CCNNNNNNNGG	3 cut(s)	208, 209, 293
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	364, 367
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	87, 146
BsiSI	CCGG	1 cut(s)	88
BslI	CCNNNNNNNGG	3 cut(s)	208, 209, 293
BsnI	GGCC	2 cut(s)	87, 146
BspACI	CCGC	3 cut(s)	231, 233, 398
BspANI	GGCC	2 cut(s)	87, 146
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	86, 392
BspMAI	CTGCAG	1 cut(s)	19
BspQI	GCTCTTC	1 cut(s)	342
BssECI	CCNNGG	3 cut(s)	148, 231, 414
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	415
Bst6I	CTCTTC	4 cut(s)	208, 342, 449, 454
BstDSI	CCRYGG	1 cut(s)	231
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	102, 118, 259
BstFNI	CGCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 419
BstNI	CCWGG	1 cut(s)	415
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	364, 367
BsuRI	GGCC	2 cut(s)	87, 146
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	102, 118, 259
Cfr13I	GGNCC	2 cut(s)	85, 145
Cfr42I	CCGCGG	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	2 cut(s)	71, 206
CviQI	GTAC	1 cut(s)	444
Eam1104I	CTCTTC	4 cut(s)	208, 342, 449, 454
EarI	CTCTTC	4 cut(s)	208, 342, 449, 454
Eco130I	CCWWGG	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	74, 209
FaiI	YATR	8 cut(s)	72, 131, 195, 207, 251, 262, 264, 327
FatI	CATG	2 cut(s)	70, 205
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	15, 353, 356
FokI	GGATG	3 cut(s)	89, 105, 266
Fsp4HI	GCNGC	3 cut(s)	15, 353, 356
FspBI	CTAG	2 cut(s)	149, 339
GluI	GCNGC	3 cut(s)	15, 353, 356
HaeIII	GGCC	2 cut(s)	87, 146
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	2 cut(s)	74, 209
HinfI	GANTC	2 cut(s)	7, 257
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	235, 298
HpyCH4V	TGCA	3 cut(s)	17, 102, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 419
Hsp92II	CATG	2 cut(s)	74, 209
KspI	CCGCGG	1 cut(s)	234
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	8 cut(s)	101, 279, 300, 372, 386, 400, 410, 427
Lsp1109I	GCAGC	2 cut(s)	364, 367
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	2 cut(s)	149, 339
MboII	GAAGA	4 cut(s)	16, 225, 359, 466
MfeI	CAATTG	1 cut(s)	279
MluCI	AATT	4 cut(s)	91, 125, 279, 434
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	8 cut(s)	75, 132, 304, 307, 313, 369, 444, 455
MspA1I	CMGCKG	2 cut(s)	233, 400
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	1 cut(s)	415
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	390, 419
NdeI	CATATG	1 cut(s)	262
NlaIII	CATG	2 cut(s)	74, 209
NlaIV	GGNNCC	2 cut(s)	86, 392
NspI	RCATGY	1 cut(s)	209
PciI	ACATGT	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	16, 354, 357
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PscI	ACATGT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	86, 392
PspPI	GGNCC	2 cut(s)	85, 145
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SacII	CCGCGG	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	342
SatI	GCNGC	3 cut(s)	15, 353, 356
Sau96I	GGNCC	2 cut(s)	85, 145
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	415
SetI	ASST	7 cut(s)	16, 144, 166, 309, 318, 324, 424
SfaNI	GCATC	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	15
Sfr303I	CCGCGG	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	4 cut(s)	91, 125, 279, 434
SsiI	CCGC	3 cut(s)	231, 233, 398
SspI	AATATT	1 cut(s)	171
SspMI	CTAG	2 cut(s)	149, 339
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	148
TaqI	TCGA	2 cut(s)	166, 177
TasI	AATT	4 cut(s)	91, 125, 279, 434
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	257
TseI	GCWGC	3 cut(s)	14, 352, 355
TspDTI	ATGAA	7 cut(s)	17, 163, 234, 249, 257, 342, 447
XagI	CCTNNNNNAGG	1 cut(s)	291
XapI	RAATTY	2 cut(s)	91, 434
XceI	RCATGY	1 cut(s)	209
XmaJI	CCTAGG	1 cut(s)	148
XspI	CTAG	2 cut(s)	149, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.