Rh6AG346500

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015698
Physical Location & Seq
Reverse (-)
54717818 .. 54733777
15960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG346500.1

Sequence Viewer

Length: 546 bp
ATGGGAGCTCCGCTCGCCCCCCTCCACATTAGCATCTCCGACCGTTTGCCTCAGCTCAGTAAGGACACTCCCATCGAGAAAGATATTGAGGTTGAGGTTACTGACCATACTATGCCTGAGTCATTCATACTTGATGAGGACGCCGGAGTGGAGGAGGTCAGGGCAGAAGATGGCGAGCTTGTGGAGGGAGGAACAGCCGCCGAGAGGCTCGGAGGAGGCGGTGGAGACAAGATTGAAGACGACGGAGCAAGCAGTGTTCTCCTGATCAGGAGAAACTTTGGTGATCTCATGGGGACTGCGGAGGATAGTTCTGCAGAGCAAGGTGATGATTTCACTCCTCGAATTGGTAATGACTATCAAGCAATGATTCCACCCCTGCGTGAAGGGACTATATTAAGTATTGAAGAAGCAGAAGACATATTTCCACCTTGCAGTGTTATTGAAAAGTATACATTTCTCCTTGGACTATATATATTTGGGAAAAATCTTAGCCTGGTGACGAGATTTGTTGGAAATAAAAACATGAAGGAAATTCAAGGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.61

Weight (kDa)

4.23

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7952 PF25826 146 - 179 1.2e-09 Domain of unknown function (DUF7952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00061
prunus_persica Prupe.1G138400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293231
rosa_laevigata RLG00000011966 RLG00000011967
rosa_multiflora Rmu_ssc0000162.1_g000023
rosa_roxburghii Rroxscaffold_7G00174330 Rroxscaffold_7G00174340
rosa_rugosa Rorug06G0233500.1
rosa_samantha Rh6AG346500 Rh6BG353800 Rh6BG353900 Rh6CG360300 Rh6DG346600 Rh6DG346700
rosa_wichuraiana Rw6G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 449
AciI CCGC 4 cut(s) 11, 198, 219, 299
AcsI RAATTY 1 cut(s) 531
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 204, 344
AgsI TTSAA 4 cut(s) 236, 404, 443, 536
AjnI CCWGG 1 cut(s) 492
AluBI AGCT 3 cut(s) 8, 55, 178
AluI AGCT 3 cut(s) 8, 55, 178
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 531
AsuHPI GGTGA 3 cut(s) 293, 335, 508
BanII GRGCYC 1 cut(s) 10
BbsI GAAGAC 2 cut(s) 243, 420
Bbv12I GWGCWC 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 80, 164
BciT130I CCWGG 1 cut(s) 494
BclI TGATCA 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 544
BfmI CTRYAG 1 cut(s) 312
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 1 cut(s) 42
BpiI GAAGAC 2 cut(s) 243, 420
BplI GAGNNNNNCTC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 460
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 344
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 1 cut(s) 460
BseLI CCNNNNNNNGG 2 cut(s) 204, 344
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 3 cut(s) 65, 70, 108
BseRI GAGGAG 3 cut(s) 167, 228, 327
Bsh1285I CGRYCG 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 2 cut(s) 307, 400
BslI CCNNNNNNNGG 2 cut(s) 204, 344
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 2 cut(s) 307, 400
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 264, 283
BspACI CCGC 4 cut(s) 11, 198, 219, 299
BspCNI CTCAG 3 cut(s) 64, 69, 109
BspMAI CTGCAG 1 cut(s) 316
BsrBI CCGCTC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 2 cut(s) 264, 283
BssNAI GTATAC 1 cut(s) 450
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 460
Bst1107I GTATAC 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 3 cut(s) 15, 176, 250
BstDEI CTNAG 4 cut(s) 51, 56, 117, 488
BstKTI GATC 2 cut(s) 267, 286
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 264, 283
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 312
BstV2I GAAGAC 2 cut(s) 243, 420
BstZ17I GTATAC 1 cut(s) 450
BtsI GCAGTG 2 cut(s) 259, 439
BtsIMutI CAGTG 2 cut(s) 259, 439
Cac8I GCNNGC 3 cut(s) 15, 176, 250
CseI GACGC 1 cut(s) 149
CviAII CATG 2 cut(s) 289, 523
CviJI RGCY 6 cut(s) 8, 55, 178, 197, 208, 492
CviKI_1 RGCY 6 cut(s) 8, 55, 178, 197, 208, 492
DdeI CTNAG 4 cut(s) 51, 56, 117, 488
DpnI GATC 2 cut(s) 266, 285
DpnII GATC 2 cut(s) 264, 283
Ecl136II GAGCTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 2 cut(s) 292, 526
FaqI GGGAC 2 cut(s) 307, 400
FatI CATG 2 cut(s) 288, 522
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 1 cut(s) 449
Fnu4HI GCNGC 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 544
GluI GCNGC 1 cut(s) 198
HapII CCGG 1 cut(s) 144
HgaI GACGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 2 cut(s) 292, 526
HinfI GANTC 2 cut(s) 119, 367
HpaII CCGG 1 cut(s) 144
HphI GGTGA 3 cut(s) 293, 335, 508
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 2 cut(s) 40, 212
Hpy188III TCNNGA 3 cut(s) 76, 262, 268
Hpy8I GTNNAC 1 cut(s) 450
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 377, 520
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 2 cut(s) 314, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 4 cut(s) 51, 56, 117, 488
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 2 cut(s) 292, 526
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 2 cut(s) 264, 283
LmnI GCTCC 3 cut(s) 5, 13, 245
LpnPI CCDG 8 cut(s) 129, 145, 157, 253, 275, 389, 479, 506
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 97, 496
MalI GATC 2 cut(s) 266, 285
MbiI CCGCTC 1 cut(s) 13
MboI GATC 2 cut(s) 264, 283
MboII GAAGA 4 cut(s) 179, 248, 416, 425
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 2 cut(s) 342, 531
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 2 cut(s) 63, 490
MseI TTAA 1 cut(s) 395
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 2 cut(s) 264, 283
NlaIII CATG 2 cut(s) 292, 526
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 496
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PstI CTGCAG 1 cut(s) 316
SacI GAGCTC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 264, 283
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 10
SetI ASST 9 cut(s) 10, 57, 93, 99, 159, 180, 325, 430, 541
SfaNI GCATC 1 cut(s) 42
SfcI CTRYAG 1 cut(s) 312
Sse9I AATT 2 cut(s) 342, 531
SsiI CCGC 4 cut(s) 11, 198, 219, 299
SspMI CTAG 1 cut(s) 544
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 2 cut(s) 75, 340
TasI AATT 2 cut(s) 342, 531
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 2 cut(s) 259, 439
TseFI GTSAC 1 cut(s) 496
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 2 cut(s) 115, 539
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 2 cut(s) 259, 439
XapI RAATTY 1 cut(s) 531
XmiI GTMKAC 1 cut(s) 449
XspI CTAG 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.