Rw6G030160

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
54357817 .. 54359795
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G030160.1

Sequence Viewer

Length: 1722 bp
ATGTGGACTGCGGAGGATAGTTCTGCAGAGCAAGGTGATGATTTCACTCCTCGAATTGGGACTATATTAAGTATTGAAGAAGCAGAAGACATATTTCCACCTTGCACTGTTATTGAAAAGTATACATTTCTCCTTGGACTATATATATTTGGGAAAAATCTTAGCCTGGTGACGAGATTTGTTGGAAATAAAAACATGAAGGAAATTCAAGCTCTCTACTATGGAGAGTTCTATGCTTCTGATGAATATAGAAGATGGTCAGAGTGGGGAAAGTGGAGAGGTAAACGCTGTATATTTGGGGAAAAACTATTTACATATTGTAGGCTGAAGGAATTGTTGTCCCGGTTGTTGCCATATGCATGTGTGTCGAAGCGATGCCAAGATGTGTTGATGGAGGTAATTAGTTTTCCGATGTTATTGTTCCGCACTTTGACTACCCTGCTCGATCGTAATAAATTTCGATCTGTTGTGCAGATTTCTAGAAATTTTATTAAGGAAAAGATTTCCTTTGAAGACTACATATTCAAGTTGAAGGATTCTGTTGGTCTTCTCTTGCTTATTGAAGCAGTTGGTATTGGAATAGAAGGGAAGGAAAACCTTACAAGCACTGCTTTTGAGCCAATATCGTCTGGCAAAGATTGGTCCTCTGTTACACCTGCAGAAATTCTAAAGTTTCTAACAAGCTTCAAGCGGTTAAGGAAAGCTCGAATGAATGCTCGATGGAAAGCTTTTTTCTGGGAAGCTGTTTGGCCCCGTCTATTAACAAGAGGATGGCAATCCCAGCAACTAAAGAGTCGTCGCATGAGACACAGTCTGAATACGTCTTTGATATTTCTTGTACCAACAAGTTCGAAAACTTGTACCAACAAGTTTTCATGGAGACTAGTGAAAGGTACTCATTATCATGTCTCGGTCAAAAATATGTTGAAGACTGTTGCATCAGACCCAAGTGTCCTTGCGCTCGGTAATGAAGAAGCTGCTGATCCTAACTTGCCAAAGAAGGAAGTACGCTGGTTCCTCGATCCATGCAGAGGAAGTAGCAGTAGAAATGGAATTACGTTTACGACCGTGGATACTAGTACTCTTCATGGAACAGAACAAAACAAGGTGACAGAACTGAAGAGTTTACCTGTTCAACCTGCCAGTTTAACTCCTCCCTCTAATCTTCTTAGTGCCACCGAAGAAGATGGCAGTGTTTCTGTGGATACTGGAATGAACCTTAACATTACCGATCCTGCTCGCAGTCATGAAGAGTCAAGCTGCAGAACTGAAAATATATCTGATGTTGATGAGTTCCAAAGCCAATCAAACTTGCCATGTCAAAGGGAGGGGCCGGAATTTCAAGTGCATCCACAATACTCATCATCCTCAATTTATGTTGAAAAAGGCAGTGTCACTGAGAATTTCCTCCATAGAGAACCATCTCCAGGAACTGCTCAAGCTCGAATATTCATCGACTTGAATGTTTCGTATGTTCCCCCACATGTGGGAAGAGATGAACCCTTCACCGCGGACACAACGAAAAGTATGGATGATTCATATGCAAACACGTCATCAATTGTGCCTGAAACAGGACAGCAGGAGGTGGAGGAGGTGGAGGTTTATGAAGTTGGGGCTAGTCCAGAGGATCGGAAAAGCACAAGGAGCCGTCCGCTGACCAAAAAAGCCTGGGAAGCTCTTGAAAATGAATTCAGCAGTACAAAGAGGAAGAGAAGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

573

Amino Acids

65.17

Weight (kDa)

7.95

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7952 PF25826 37 - 134 3.4e-34 Domain of unknown function (DUF7952)
DUF7952 PF25826 143 - 193 9.7e-09 Domain of unknown function (DUF7952)
DUF7650 PF24662 220 - 316 8e-27 Domain of unknown function (DUF7650)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015698)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 664
AasI GACNNNNNNGTC 1 cut(s) 950
Acc36I ACCTGC 2 cut(s) 664, 1147
AccI GTMKAC 1 cut(s) 122
AccII CGCG 1 cut(s) 1511
AciI CCGC 6 cut(s) 11, 424, 691, 1509, 1511, 1652
AclWI GGATC 4 cut(s) 977, 1016, 1226, 1635
AcsI RAATTY 7 cut(s) 204, 455, 484, 663, 1337, 1402, 1688
AcuI CTGAAG 2 cut(s) 347, 1139
AfaI GTAC 6 cut(s) 840, 862, 895, 1008, 1081, 1699
AfiI CCNNNNNNNGG 6 cut(s) 56, 1031, 1427, 1486, 1487, 1571
AflIII ACRYGT 2 cut(s) 1483, 1548
AhlI ACTAGT 2 cut(s) 883, 1076
AjiI CACGTC 1 cut(s) 1551
AjnI CCWGG 3 cut(s) 165, 1426, 1667
AluBI AGCT 9 cut(s) 212, 684, 704, 728, 743, 977, 1260, 1442, 1676
AluI AGCT 9 cut(s) 212, 684, 704, 728, 743, 977, 1260, 1442, 1676
Alw26I GTCTC 3 cut(s) 799, 874, 913
AlwI GGATC 4 cut(s) 977, 1016, 1226, 1635
AlwNI CAGNNNCTG 1 cut(s) 1433
AoxI GGCC 2 cut(s) 749, 1331
ApeKI GCWGC 2 cut(s) 977, 1260
ApoI RAATTY 7 cut(s) 204, 455, 484, 663, 1337, 1402, 1688
AspLEI GCGC 1 cut(s) 961
AspS9I GGNCC 3 cut(s) 642, 750, 1331
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 4 cut(s) 47, 181, 1120, 1498
AsuII TTCGAA 1 cut(s) 851
AvaII GGWCC 1 cut(s) 642
BbsI GAAGAC 4 cut(s) 93, 519, 539, 935
BbvI GCAGC 2 cut(s) 964, 1247
BccI CCATC 6 cut(s) 249, 385, 714, 765, 1181, 1429
BceAI ACGGC 1 cut(s) 1632
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BciT130I CCWGG 3 cut(s) 167, 1428, 1669
BciVI GTATCC 2 cut(s) 1066, 1198
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 799, 874, 913
BcuI ACTAGT 2 cut(s) 883, 1076
BfaI CTAG 4 cut(s) 480, 884, 1077, 1617
BfmI CTRYAG 3 cut(s) 24, 657, 1261
BfuAI ACCTGC 2 cut(s) 664, 1147
BfuI GTATCC 2 cut(s) 1066, 1198
BisI GCNGC 2 cut(s) 978, 1261
BlsI GCNGC 2 cut(s) 979, 1262
BmcAI AGTACT 1 cut(s) 1081
Bme1390I CCNGG 4 cut(s) 167, 343, 1428, 1669
Bme18I GGWCC 1 cut(s) 642
BmgBI CACGTC 1 cut(s) 1551
BmgT120I GGNCC 3 cut(s) 642, 750, 1331
BmiI GGNNCC 4 cut(s) 752, 1016, 1332, 1646
BmrFI CCNGG 4 cut(s) 167, 343, 1428, 1669
BmsI GCATC 3 cut(s) 365, 947, 1357
BpiI GAAGAC 4 cut(s) 93, 519, 539, 935
BpmI CTGGAG 1 cut(s) 1410
Bpu14I TTCGAA 1 cut(s) 851
BpuEI CTTGAG 1 cut(s) 1422
BpuMI CCSGG 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 775
BsaJI CCNNGG 4 cut(s) 133, 1068, 1509, 1668
Bsc4I CCNNNNNNNGG 6 cut(s) 56, 1031, 1427, 1486, 1487, 1571
Bse1I ACTGG 2 cut(s) 1143, 1213
Bse8I GATNNNNATC 1 cut(s) 775
BseBI CCWGG 3 cut(s) 167, 1428, 1669
BseDI CCNNGG 4 cut(s) 133, 1068, 1509, 1668
BseGI GGATG 4 cut(s) 776, 1348, 1364, 1537
BseJI GATNNNNATC 1 cut(s) 775
BseLI CCNNNNNNNGG 6 cut(s) 56, 1031, 1427, 1486, 1487, 1571
BseMII CTCAG 1 cut(s) 1389
BseNI ACTGG 2 cut(s) 1143, 1213
BseRI GAGGAG 3 cut(s) 39, 1143, 1604
BseXI GCAGC 2 cut(s) 964, 1247
BseYI CCCAGC 1 cut(s) 780
BsgI GTGCAG 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 1511
Bsh1285I CGRYCG 2 cut(s) 448, 1068
BshFI GGCC 2 cut(s) 751, 1333
BsiEI CGRYCG 2 cut(s) 448, 1068
BsiSI CCGG 2 cut(s) 343, 1334
BslFI GGGAC 2 cut(s) 73, 325
BslI CCNNNNNNNGG 6 cut(s) 56, 1031, 1427, 1486, 1487, 1571
BsmAI GTCTC 3 cut(s) 799, 874, 913
BsmFI GGGAC 2 cut(s) 73, 325
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 2 cut(s) 751, 1333
Bsp119I TTCGAA 1 cut(s) 851
Bsp143I GATC 6 cut(s) 445, 461, 982, 1021, 1231, 1627
BspACI CCGC 6 cut(s) 11, 424, 691, 1509, 1511, 1652
BspANI GGCC 2 cut(s) 751, 1333
BspCNI CTCAG 1 cut(s) 1390
BspFNI CGCG 1 cut(s) 1511
BspHI TCATGA 1 cut(s) 1246
BspLI GGNNCC 4 cut(s) 752, 1016, 1332, 1646
BspMAI CTGCAG 3 cut(s) 28, 661, 1265
BspMI ACCTGC 2 cut(s) 664, 1147
BspPI GGATC 4 cut(s) 977, 1016, 1226, 1635
BspT104I TTCGAA 1 cut(s) 851
BsrI ACTGG 2 cut(s) 1143, 1213
BssECI CCNNGG 4 cut(s) 133, 1068, 1509, 1668
BssMI GATC 6 cut(s) 445, 461, 982, 1021, 1231, 1627
BssNAI GTATAC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 133
Bst1107I GTATAC 1 cut(s) 123
Bst2UI CCWGG 3 cut(s) 167, 1428, 1669
Bst4CI ACNGT 4 cut(s) 109, 812, 934, 1069
Bst6I CTCTTC 6 cut(s) 1089, 1115, 1245, 1486, 1703, 1708
BstBI TTCGAA 1 cut(s) 851
BstC8I GCNNGC 1 cut(s) 1240
BstDEI CTNAG 3 cut(s) 161, 1169, 1398
BstDSI CCRYGG 2 cut(s) 1068, 1509
BstENI CCTNNNNNAGG 1 cut(s) 1569
BstF5I GGATG 4 cut(s) 776, 1348, 1364, 1537
BstFNI CGCG 1 cut(s) 1511
BstHHI GCGC 1 cut(s) 961
BstKTI GATC 6 cut(s) 448, 464, 985, 1024, 1234, 1630
BstMAI GTCTC 3 cut(s) 799, 874, 913
BstMBI GATC 6 cut(s) 445, 461, 982, 1021, 1231, 1627
BstMCI CGRYCG 2 cut(s) 448, 1068
BstMWI GCNNNNNNNGC 3 cut(s) 781, 1644, 1673
BstNI CCWGG 3 cut(s) 167, 1428, 1669
BstNSI RCATGY 2 cut(s) 363, 1487
BstSCI CCNGG 4 cut(s) 165, 341, 1426, 1667
BstSFI CTRYAG 3 cut(s) 24, 657, 1261
BstUI CGCG 1 cut(s) 1511
BstV1I GCAGC 2 cut(s) 964, 1247
BstV2I GAAGAC 4 cut(s) 93, 519, 539, 935
BstZ17I GTATAC 1 cut(s) 123
BsuI GTATCC 2 cut(s) 1066, 1198
BsuRI GGCC 2 cut(s) 751, 1333
BtgI CCRYGG 2 cut(s) 1068, 1509
BtgZI GCGATG 1 cut(s) 388
BtrI CACGTC 1 cut(s) 1551
BtsCI GGATG 4 cut(s) 776, 1348, 1364, 1537
BtsI GCAGTG 3 cut(s) 606, 1198, 1396
BtsIMutI CAGTG 5 cut(s) 105, 606, 1198, 1395, 1396
BveI ACCTGC 2 cut(s) 664, 1147
Cac8I GCNNGC 1 cut(s) 1240
CaiI CAGNNNCTG 1 cut(s) 1433
CciI TCATGA 1 cut(s) 1246
CfoI GCGC 1 cut(s) 961
Cfr13I GGNCC 3 cut(s) 642, 750, 1331
Cfr42I CCGCGG 1 cut(s) 1512
Csp6I GTAC 6 cut(s) 839, 861, 894, 1007, 1080, 1698
CviQI GTAC 6 cut(s) 839, 861, 894, 1007, 1080, 1698
DdeI CTNAG 3 cut(s) 161, 1169, 1398
DpnI GATC 6 cut(s) 447, 463, 984, 1023, 1233, 1629
DpnII GATC 6 cut(s) 445, 461, 982, 1021, 1231, 1627
DrdI GACNNNNNNGTC 1 cut(s) 950
DseDI GACNNNNNNGTC 1 cut(s) 950
Eam1104I CTCTTC 6 cut(s) 1089, 1115, 1245, 1486, 1703, 1708
EarI CTCTTC 6 cut(s) 1089, 1115, 1245, 1486, 1703, 1708
Eco130I CCWWGG 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 642
Eco57I CTGAAG 2 cut(s) 347, 1139
EcoNI CCTNNNNNAGG 1 cut(s) 1569
EcoRI GAATTC 1 cut(s) 1688
EcoRII CCWGG 3 cut(s) 165, 1426, 1667
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 133
FalI AAGNNNNNCTT 4 cut(s) 491, 523, 595, 627
FaqI GGGAC 2 cut(s) 73, 325
FauNDI CATATG 2 cut(s) 355, 1540
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 978, 1261
FokI GGATG 4 cut(s) 783, 1335, 1351, 1544
Fsp4HI GCNGC 2 cut(s) 978, 1261
FspBI CTAG 4 cut(s) 480, 884, 1077, 1617
GlaI GCGC 1 cut(s) 960
GluI GCNGC 2 cut(s) 978, 1261
GsaI CCCAGC 1 cut(s) 784
GsuI CTGGAG 1 cut(s) 1410
HaeIII GGCC 2 cut(s) 751, 1333
HapII CCGG 2 cut(s) 343, 1334
HhaI GCGC 1 cut(s) 961
Hin6I GCGC 1 cut(s) 959
HinP1I GCGC 1 cut(s) 959
HindIII AAGCTT 2 cut(s) 682, 726
HinfI GANTC 4 cut(s) 536, 793, 1253, 1535
HpaII CCGG 2 cut(s) 343, 1334
HphI GGTGA 4 cut(s) 47, 181, 1120, 1498
Hpy166II GTNNAC 5 cut(s) 6, 123, 284, 1062, 1127
Hpy188I TCNGA 7 cut(s) 241, 262, 411, 816, 943, 1282, 1632
Hpy188III TCNNGA 4 cut(s) 480, 1247, 1622, 1679
Hpy8I GTNNAC 5 cut(s) 6, 123, 284, 1062, 1127
Hpy99I CGWCG 1 cut(s) 801
HpyAV CCTTC 7 cut(s) 193, 322, 526, 578, 583, 994, 1513
HpyCH4III ACNGT 4 cut(s) 109, 812, 934, 1069
HpyCH4IV ACGT 3 cut(s) 821, 1058, 1550
HpyF10VI GCNNNNNNNGC 3 cut(s) 781, 1644, 1673
HpyF3I CTNAG 3 cut(s) 161, 1169, 1398
HpySE526I ACGT 3 cut(s) 821, 1058, 1550
HspAI GCGC 1 cut(s) 959
KspI CCGCGG 1 cut(s) 1512
Kzo9I GATC 6 cut(s) 445, 461, 982, 1021, 1231, 1627
LmnI GCTCC 1 cut(s) 1644
Lsp1109I GCAGC 2 cut(s) 964, 1247
LweI GCATC 3 cut(s) 365, 947, 1357
MaeI CTAG 4 cut(s) 480, 884, 1077, 1617
MaeII ACGT 3 cut(s) 821, 1058, 1550
MaeIII GTNAC 4 cut(s) 169, 649, 1108, 1393
MalI GATC 6 cut(s) 447, 463, 984, 1023, 1233, 1629
MboI GATC 6 cut(s) 445, 461, 982, 1021, 1231, 1627
MfeI CAATTG 1 cut(s) 1557
MlyI GAGTC 2 cut(s) 802, 1262
MmeI TCCRAC 1 cut(s) 163
Mph1103I ATGCAT 1 cut(s) 361
MseI TTAA 6 cut(s) 68, 492, 695, 761, 1148, 1221
MslI CAYNNNNRTG 2 cut(s) 358, 903
MspA1I CMGCKG 2 cut(s) 1511, 1654
MspI CCGG 2 cut(s) 343, 1334
MspR9I CCNGG 4 cut(s) 167, 343, 1428, 1669
MunI CAATTG 1 cut(s) 1557
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 3 cut(s) 167, 1428, 1669
MvnI CGCG 1 cut(s) 1511
MwoI GCNNNNNNNGC 3 cut(s) 781, 1644, 1673
NciI CCSGG 1 cut(s) 343
NdeI CATATG 2 cut(s) 355, 1540
NdeII GATC 6 cut(s) 445, 461, 982, 1021, 1231, 1627
NlaIV GGNNCC 4 cut(s) 752, 1016, 1332, 1646
NmuCI GTSAC 3 cut(s) 169, 1108, 1393
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 2 cut(s) 363, 1487
NspV TTCGAA 1 cut(s) 851
PagI TCATGA 1 cut(s) 1246
PaqCI CACCTGC 1 cut(s) 664
PciI ACATGT 1 cut(s) 1483
PctI GAATGC 1 cut(s) 718
PfeI GAWTC 2 cut(s) 536, 1535
PflFI GACNNNGTC 1 cut(s) 810
PfoI TCCNGGA 1 cut(s) 1426
PkrI GCNGC 2 cut(s) 979, 1262
Ple19I CGATCG 1 cut(s) 448
PleI GAGTC 2 cut(s) 801, 1261
PpsI GAGTC 2 cut(s) 801, 1261
PscI ACATGT 1 cut(s) 1483
Psp6I CCWGG 3 cut(s) 165, 1426, 1667
PspFI CCCAGC 1 cut(s) 780
PspGI CCWGG 3 cut(s) 165, 1426, 1667
PspN4I GGNNCC 4 cut(s) 752, 1016, 1332, 1646
PspPI GGNCC 3 cut(s) 642, 750, 1331
PstI CTGCAG 3 cut(s) 28, 661, 1265
PstNI CAGNNNCTG 1 cut(s) 1433
PsyI GACNNNGTC 1 cut(s) 810
PvuI CGATCG 1 cut(s) 448
RsaI GTAC 6 cut(s) 840, 862, 895, 1008, 1081, 1699
RsaNI GTAC 6 cut(s) 839, 861, 894, 1007, 1080, 1698
RseI CAYNNNNRTG 2 cut(s) 358, 903
SacII CCGCGG 1 cut(s) 1512
SaqAI TTAA 6 cut(s) 68, 492, 695, 761, 1148, 1221
SatI GCNGC 2 cut(s) 978, 1261
Sau3AI GATC 6 cut(s) 445, 461, 982, 1021, 1231, 1627
Sau96I GGNCC 3 cut(s) 642, 750, 1331
ScaI AGTACT 1 cut(s) 1081
SchI GAGTC 2 cut(s) 802, 1262
ScrFI CCNGG 4 cut(s) 167, 343, 1428, 1669
SfaNI GCATC 3 cut(s) 365, 947, 1357
SfcI CTRYAG 3 cut(s) 24, 657, 1261
Sfr303I CCGCGG 1 cut(s) 1512
SfuI TTCGAA 1 cut(s) 851
SgrBI CCGCGG 1 cut(s) 1512
SinI GGWCC 1 cut(s) 642
SmiMI CAYNNNNRTG 2 cut(s) 358, 903
SmlI CTYRAG 1 cut(s) 1437
SmoI CTYRAG 1 cut(s) 1437
SpeI ACTAGT 2 cut(s) 883, 1076
SsiI CCGC 6 cut(s) 11, 424, 691, 1509, 1511, 1652
SspI AATATT 1 cut(s) 1449
SspMI CTAG 4 cut(s) 480, 884, 1077, 1617
StyD4I CCNGG 4 cut(s) 165, 341, 1426, 1667
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 4 cut(s) 109, 812, 934, 1069
TaiI ACGT 3 cut(s) 824, 1061, 1553
TaqII GACCGA 1 cut(s) 901
TatI WGTACW 2 cut(s) 1079, 1697
TfiI GAWTC 2 cut(s) 536, 1535
Tru1I TTAA 6 cut(s) 68, 492, 695, 761, 1148, 1221
Tru9I TTAA 6 cut(s) 68, 492, 695, 761, 1148, 1221
TscAI CASTG 5 cut(s) 112, 613, 1198, 1396, 1402
TseFI GTSAC 3 cut(s) 169, 1108, 1393
TseI GCWGC 2 cut(s) 977, 1260
Tsp45I GTSAC 3 cut(s) 169, 1108, 1393
TspRI CASTG 5 cut(s) 112, 613, 1198, 1396, 1402
Tth111I GACNNNGTC 1 cut(s) 810
VpaK11BI GGWCC 1 cut(s) 642
XagI CCTNNNNNAGG 1 cut(s) 1569
XapI RAATTY 7 cut(s) 204, 455, 484, 663, 1337, 1402, 1688
XbaI TCTAGA 1 cut(s) 479
XceI RCATGY 2 cut(s) 363, 1487
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 4 cut(s) 480, 884, 1077, 1617
ZrmI AGTACT 1 cut(s) 1081
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.