Rmu_ssc0000162.1_g000023

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000162.1
OG0015698
Physical Location & Seq
Reverse (-)
131148 .. 132456
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000162.1_g000023.1.cds

Sequence Viewer

Length: 1179 bp
atgcatactcctgttgatttagtgactaccctgctcgatcgtaataaatttcgatctgttgtgcagatttctagaaattttattaaggaaaagatttcctttgaagactacatattcaagttgaaggattctgttggtcttctcttgcttattgaagcagttggtattggaatagaagggaaggaaaaccttacaagcactgcttttgagccaatatcgtctggcaaagattggtcctctgttacacctgcagaaattctaaagtttctaacaagcttcaagcggttaaggaaagctcgaatgaatgctcgatggaaagcttttttctgggaagctgtttggccccgtctattaacaagaggatggcaatcccagcaactaaagagtcgtcgcatgagacacagtctgaatacgtctttgatatttcttgtaccaacaagttcgaaaacttgtaccaacaagttttcatggagactagtgaaaggtactcattatcatgtctcggtcaaaaatatgttgaagactgttgcatcagacccaagtgtccttgcgctcggtaatgaagaagctgctgatcctaacttgccaaagaaggaagtacgctggttcctcgatccatgcagaggaagtagcagtagaaatggaattacgtttacgaccgtggatactagtactcttcatggaacagaacaaaacaaggtgacagaactgaagagtttacctgttcaacctgccagtttaactcctccctctaatcttcttagtgccaccgaagaagatggcagtgtttctgtggatactggaatgaaccttaacattaccgatcctgctcgcagtcatgaagagtcaagctgcagaactgaaaatatatctgatgttgatgatgtcactgagaatttcctccatagagaaccatctccaggaactgctcaagctcgaatattcatcgacttgaatgtttcgtatgttcccccacatgtgggaagagatgaacccttcaccgcggacacaacgaaaagtatggatgattcatatgcaaacacgtcatcaattgtgcctgaaacaggacagcaggaggtggaggaggtggaggtttatgaagttggggctagtgtagaagagcagcagcctgttgctaacagccagaggatcggaaaagcacaaggagccgtccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

392

Amino Acids

43.72

Weight (kDa)

6.29

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00061
prunus_persica Prupe.1G138400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293231
rosa_laevigata RLG00000011966 RLG00000011967
rosa_multiflora Rmu_ssc0000162.1_g000023
rosa_roxburghii Rroxscaffold_7G00174330 Rroxscaffold_7G00174340
rosa_rugosa Rorug06G0233500.1
rosa_samantha Rh6AG346500 Rh6BG353800 Rh6BG353900 Rh6CG360300 Rh6DG346600 Rh6DG346700
rosa_wichuraiana Rw6G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 256
AasI GACNNNNNNGTC 1 cut(s) 542
Acc36I ACCTGC 2 cut(s) 256, 739
AccII CGCG 1 cut(s) 1004
AciI CCGC 4 cut(s) 283, 1002, 1004, 1174
AclWI GGATC 4 cut(s) 569, 608, 818, 1157
AcsI RAATTY 4 cut(s) 47, 76, 255, 895
AcuI CTGAAG 1 cut(s) 731
AfaI GTAC 5 cut(s) 432, 454, 487, 600, 673
AfiI CCNNNNNNNGG 5 cut(s) 623, 920, 979, 980, 1064
AflIII ACRYGT 2 cut(s) 976, 1041
AgsI TTSAA 8 cut(s) 104, 118, 124, 155, 280, 520, 728, 955
AhlI ACTAGT 2 cut(s) 475, 668
AjiI CACGTC 1 cut(s) 1044
AjnI CCWGG 1 cut(s) 919
AluBI AGCT 7 cut(s) 276, 296, 320, 335, 569, 852, 935
AluI AGCT 7 cut(s) 276, 296, 320, 335, 569, 852, 935
Alw26I GTCTC 3 cut(s) 391, 466, 505
AlwI GGATC 4 cut(s) 569, 608, 818, 1157
AlwNI CAGNNNCTG 1 cut(s) 926
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 4 cut(s) 569, 852, 1123, 1126
ApoI RAATTY 4 cut(s) 47, 76, 255, 895
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 2 cut(s) 234, 342
AsuHPI GGTGA 2 cut(s) 712, 991
AsuII TTCGAA 1 cut(s) 443
AvaII GGWCC 1 cut(s) 234
BbsI GAAGAC 3 cut(s) 111, 131, 527
BbvI GCAGC 4 cut(s) 556, 839, 1135, 1138
BccI CCATC 4 cut(s) 306, 357, 773, 922
BceAI ACGGC 1 cut(s) 1154
BciT130I CCWGG 1 cut(s) 921
BciVI GTATCC 2 cut(s) 658, 790
BcoDI GTCTC 3 cut(s) 391, 466, 505
BcuI ACTAGT 2 cut(s) 475, 668
BfaI CTAG 4 cut(s) 72, 476, 669, 1110
BfmI CTRYAG 2 cut(s) 249, 853
BfuAI ACCTGC 2 cut(s) 256, 739
BfuI GTATCC 2 cut(s) 658, 790
BisI GCNGC 4 cut(s) 570, 853, 1124, 1127
BlsI GCNGC 4 cut(s) 571, 854, 1125, 1128
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 1 cut(s) 921
Bme18I GGWCC 1 cut(s) 234
BmgBI CACGTC 1 cut(s) 1044
BmgT120I GGNCC 2 cut(s) 234, 342
BmiI GGNNCC 3 cut(s) 344, 608, 1168
BmrFI CCNGG 1 cut(s) 921
BmsI GCATC 1 cut(s) 539
BpiI GAAGAC 3 cut(s) 111, 131, 527
BpmI CTGGAG 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 915
BsaBI GATNNNNATC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 660, 1002
Bsc4I CCNNNNNNNGG 5 cut(s) 623, 920, 979, 980, 1064
Bse1I ACTGG 2 cut(s) 735, 805
Bse8I GATNNNNATC 1 cut(s) 367
BseBI CCWGG 1 cut(s) 921
BseDI CCNNGG 2 cut(s) 660, 1002
BseGI GGATG 2 cut(s) 368, 1030
BseJI GATNNNNATC 1 cut(s) 367
BseLI CCNNNNNNNGG 5 cut(s) 623, 920, 979, 980, 1064
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 2 cut(s) 735, 805
BseRI GAGGAG 2 cut(s) 735, 1097
BseXI GCAGC 4 cut(s) 556, 839, 1135, 1138
BseYI CCCAGC 1 cut(s) 372
BsgI GTGCAG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 1004
Bsh1285I CGRYCG 2 cut(s) 40, 660
BshFI GGCC 1 cut(s) 343
BsiEI CGRYCG 2 cut(s) 40, 660
BslI CCNNNNNNNGG 5 cut(s) 623, 920, 979, 980, 1064
BsmAI GTCTC 3 cut(s) 391, 466, 505
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 443
Bsp143I GATC 6 cut(s) 37, 53, 574, 613, 823, 1149
BspACI CCGC 4 cut(s) 283, 1002, 1004, 1174
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 883
BspFNI CGCG 1 cut(s) 1004
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 3 cut(s) 344, 608, 1168
BspMAI CTGCAG 2 cut(s) 253, 857
BspMI ACCTGC 2 cut(s) 256, 739
BspPI GGATC 4 cut(s) 569, 608, 818, 1157
BspQI GCTCTTC 1 cut(s) 1113
BspT104I TTCGAA 1 cut(s) 443
BsrI ACTGG 2 cut(s) 735, 805
BssECI CCNNGG 2 cut(s) 660, 1002
BssMI GATC 6 cut(s) 37, 53, 574, 613, 823, 1149
Bst2UI CCWGG 1 cut(s) 921
Bst4CI ACNGT 3 cut(s) 404, 526, 661
Bst6I CTCTTC 5 cut(s) 681, 707, 837, 979, 1113
BstBI TTCGAA 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 832
BstDEI CTNAG 2 cut(s) 761, 891
BstDSI CCRYGG 2 cut(s) 660, 1002
BstENI CCTNNNNNAGG 1 cut(s) 1062
BstF5I GGATG 2 cut(s) 368, 1030
BstFNI CGCG 1 cut(s) 1004
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 6 cut(s) 40, 56, 577, 616, 826, 1152
BstMAI GTCTC 3 cut(s) 391, 466, 505
BstMBI GATC 6 cut(s) 37, 53, 574, 613, 823, 1149
BstMCI CGRYCG 2 cut(s) 40, 660
BstMWI GCNNNNNNNGC 2 cut(s) 373, 1166
BstNI CCWGG 1 cut(s) 921
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 1 cut(s) 919
BstSFI CTRYAG 2 cut(s) 249, 853
BstUI CGCG 1 cut(s) 1004
BstV1I GCAGC 4 cut(s) 556, 839, 1135, 1138
BstV2I GAAGAC 3 cut(s) 111, 131, 527
BsuI GTATCC 2 cut(s) 658, 790
BsuRI GGCC 1 cut(s) 343
BtgI CCRYGG 2 cut(s) 660, 1002
BtrI CACGTC 1 cut(s) 1044
BtsCI GGATG 2 cut(s) 368, 1030
BtsI GCAGTG 2 cut(s) 198, 790
BtsIMutI CAGTG 3 cut(s) 198, 790, 888
BveI ACCTGC 2 cut(s) 256, 739
Cac8I GCNNGC 1 cut(s) 832
CaiI CAGNNNCTG 1 cut(s) 926
CciI TCATGA 1 cut(s) 838
CfoI GCGC 1 cut(s) 553
Cfr13I GGNCC 2 cut(s) 234, 342
Cfr42I CCGCGG 1 cut(s) 1005
Csp6I GTAC 5 cut(s) 431, 453, 486, 599, 672
CviAII CATG 7 cut(s) 394, 468, 497, 618, 680, 839, 977
CviQI GTAC 5 cut(s) 431, 453, 486, 599, 672
DdeI CTNAG 2 cut(s) 761, 891
DpnI GATC 6 cut(s) 39, 55, 576, 615, 825, 1151
DpnII GATC 6 cut(s) 37, 53, 574, 613, 823, 1149
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
Eam1104I CTCTTC 5 cut(s) 681, 707, 837, 979, 1113
EarI CTCTTC 5 cut(s) 681, 707, 837, 979, 1113
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 731
EcoNI CCTNNNNNAGG 1 cut(s) 1062
EcoRII CCWGG 1 cut(s) 919
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 7 cut(s) 397, 471, 500, 621, 683, 842, 980
FalI AAGNNNNNCTT 4 cut(s) 83, 115, 187, 219
FatI CATG 7 cut(s) 393, 467, 496, 617, 679, 838, 976
FauNDI CATATG 1 cut(s) 1033
Fnu4HI GCNGC 4 cut(s) 570, 853, 1124, 1127
FokI GGATG 2 cut(s) 375, 1037
Fsp4HI GCNGC 4 cut(s) 570, 853, 1124, 1127
FspBI CTAG 4 cut(s) 72, 476, 669, 1110
GlaI GCGC 1 cut(s) 552
GluI GCNGC 4 cut(s) 570, 853, 1124, 1127
GsaI CCCAGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 903
HaeIII GGCC 1 cut(s) 343
HhaI GCGC 1 cut(s) 553
Hin1II CATG 7 cut(s) 397, 471, 500, 621, 683, 842, 980
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HindIII AAGCTT 2 cut(s) 274, 318
HinfI GANTC 4 cut(s) 128, 385, 845, 1028
HphI GGTGA 2 cut(s) 712, 991
Hpy166II GTNNAC 2 cut(s) 654, 719
Hpy188I TCNGA 4 cut(s) 408, 535, 874, 1154
Hpy188III TCNNGA 2 cut(s) 72, 839
Hpy8I GTNNAC 2 cut(s) 654, 719
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 5 cut(s) 118, 170, 175, 586, 1006
HpyCH4III ACNGT 3 cut(s) 404, 526, 661
HpyCH4IV ACGT 3 cut(s) 413, 650, 1043
HpyCH4V TGCA 7 cut(s) 4, 64, 251, 530, 621, 855, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 1166
HpyF3I CTNAG 2 cut(s) 761, 891
HpySE526I ACGT 3 cut(s) 413, 650, 1043
Hsp92II CATG 7 cut(s) 397, 471, 500, 621, 683, 842, 980
HspAI GCGC 1 cut(s) 551
KspI CCGCGG 1 cut(s) 1005
Kzo9I GATC 6 cut(s) 37, 53, 574, 613, 823, 1149
LguI GCTCTTC 1 cut(s) 1113
LmnI GCTCC 1 cut(s) 1166
Lsp1109I GCAGC 4 cut(s) 556, 839, 1135, 1138
LweI GCATC 1 cut(s) 539
MaeI CTAG 4 cut(s) 72, 476, 669, 1110
MaeII ACGT 3 cut(s) 413, 650, 1043
MaeIII GTNAC 4 cut(s) 22, 241, 700, 886
MalI GATC 6 cut(s) 39, 55, 576, 615, 825, 1151
MboI GATC 6 cut(s) 37, 53, 574, 613, 823, 1149
MfeI CAATTG 1 cut(s) 1050
MluCI AATT 6 cut(s) 47, 76, 255, 645, 895, 1050
MlyI GAGTC 2 cut(s) 394, 854
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 84, 287, 353, 740, 813
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 2 cut(s) 1004, 1176
MspR9I CCNGG 1 cut(s) 921
MunI CAATTG 1 cut(s) 1050
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 921
MvnI CGCG 1 cut(s) 1004
MwoI GCNNNNNNNGC 2 cut(s) 373, 1166
NdeI CATATG 1 cut(s) 1033
NdeII GATC 6 cut(s) 37, 53, 574, 613, 823, 1149
NlaIII CATG 7 cut(s) 397, 471, 500, 621, 683, 842, 980
NlaIV GGNNCC 3 cut(s) 344, 608, 1168
NmuCI GTSAC 3 cut(s) 22, 700, 886
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 980
NspV TTCGAA 1 cut(s) 443
PagI TCATGA 1 cut(s) 838
PaqCI CACCTGC 1 cut(s) 256
PciI ACATGT 1 cut(s) 976
PciSI GCTCTTC 1 cut(s) 1113
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 128, 1028
PflFI GACNNNGTC 1 cut(s) 402
PfoI TCCNGGA 1 cut(s) 919
PkrI GCNGC 4 cut(s) 571, 854, 1125, 1128
Ple19I CGATCG 1 cut(s) 40
PleI GAGTC 2 cut(s) 393, 853
PpsI GAGTC 2 cut(s) 393, 853
PscI ACATGT 1 cut(s) 976
Psp6I CCWGG 1 cut(s) 919
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 1 cut(s) 919
PspN4I GGNNCC 3 cut(s) 344, 608, 1168
PspPI GGNCC 2 cut(s) 234, 342
PstI CTGCAG 2 cut(s) 253, 857
PstNI CAGNNNCTG 1 cut(s) 926
PsyI GACNNNGTC 1 cut(s) 402
PvuI CGATCG 1 cut(s) 40
RsaI GTAC 5 cut(s) 432, 454, 487, 600, 673
RsaNI GTAC 5 cut(s) 431, 453, 486, 599, 672
RseI CAYNNNNRTG 1 cut(s) 495
SacII CCGCGG 1 cut(s) 1005
SapI GCTCTTC 1 cut(s) 1113
SaqAI TTAA 5 cut(s) 84, 287, 353, 740, 813
SatI GCNGC 4 cut(s) 570, 853, 1124, 1127
Sau3AI GATC 6 cut(s) 37, 53, 574, 613, 823, 1149
Sau96I GGNCC 2 cut(s) 234, 342
ScaI AGTACT 1 cut(s) 673
SchI GAGTC 2 cut(s) 394, 854
ScrFI CCNGG 1 cut(s) 921
SfaNI GCATC 1 cut(s) 539
SfcI CTRYAG 2 cut(s) 249, 853
Sfr303I CCGCGG 1 cut(s) 1005
SfuI TTCGAA 1 cut(s) 443
SgrBI CCGCGG 1 cut(s) 1005
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 930
SmoI CTYRAG 1 cut(s) 930
SpeI ACTAGT 2 cut(s) 475, 668
Sse9I AATT 6 cut(s) 47, 76, 255, 645, 895, 1050
SsiI CCGC 4 cut(s) 283, 1002, 1004, 1174
SspI AATATT 1 cut(s) 942
SspMI CTAG 4 cut(s) 72, 476, 669, 1110
StyD4I CCNGG 1 cut(s) 919
TaaI ACNGT 3 cut(s) 404, 526, 661
TaiI ACGT 3 cut(s) 416, 653, 1046
TaqI TCGA 8 cut(s) 36, 52, 298, 310, 443, 612, 937, 948
TaqII GACCGA 1 cut(s) 493
TasI AATT 6 cut(s) 47, 76, 255, 645, 895, 1050
TatI WGTACW 1 cut(s) 671
TfiI GAWTC 2 cut(s) 128, 1028
Tru1I TTAA 5 cut(s) 84, 287, 353, 740, 813
Tru9I TTAA 5 cut(s) 84, 287, 353, 740, 813
TscAI CASTG 3 cut(s) 205, 790, 895
TseFI GTSAC 3 cut(s) 22, 700, 886
TseI GCWGC 4 cut(s) 569, 852, 1123, 1126
Tsp45I GTSAC 3 cut(s) 22, 700, 886
TspRI CASTG 3 cut(s) 205, 790, 895
Tth111I GACNNNGTC 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 234
XagI CCTNNNNNAGG 1 cut(s) 1062
XapI RAATTY 4 cut(s) 47, 76, 255, 895
XbaI TCTAGA 1 cut(s) 71
XceI RCATGY 1 cut(s) 980
XspI CTAG 4 cut(s) 72, 476, 669, 1110
ZrmI AGTACT 1 cut(s) 673
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.