Rh6DG346700

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015698
Physical Location & Seq
Reverse (-)
54866844 .. 54868065
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG346700.1

Sequence Viewer

Length: 537 bp
ATGGGGACTGCGGAGGATAGTTCTGCAGAGCAAGGTGATGATTTCACTCCTCGAATTGGTAATGACTATCAAGCAATGATTCCACCCCTGCGTGAAGGGACTATATTAAGTATTGAAGAAGCAGAAGACATATTTCCACCTTGCAGTGTTATTGAAAAGTATACATTTCTCCTTGGACTATATATATTTGGGAAAAATCTTAGCCTGGTGACGAGATTTGTTGGAAATAAGAACATGAAGGAAATTCAAGCTCTCTACTATGGAGAGTTCTATGCTTCTGATGAATATAGAAGATGGTCAGAGTGGGGAAAGTGGAGAGGTAAACGCTGTATATTTGGGGAAAAACTATTTACATATTGTAGGCTGAAGGAATTGTTGTCCCGGTTGTTGTCATGTGTGTCGAAGCGATGCCAAGATGTGTTGATGGAGGTAATTAGTTTTCCGATGTTATTGTTCTGCACTTGTACTATAATCTACTTACCAAGGGAAGGAAGACGAATTATTAACGAAGATATCTACCTAGGCTGTTTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.72

Weight (kDa)

5.39

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7952 PF25826 50 - 145 4.7e-37 Domain of unknown function (DUF7952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00061
prunus_persica Prupe.1G138400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293231
rosa_laevigata RLG00000011966 RLG00000011967
rosa_multiflora Rmu_ssc0000162.1_g000023
rosa_roxburghii Rroxscaffold_7G00174330 Rroxscaffold_7G00174340
rosa_rugosa Rorug06G0233500.1
rosa_samantha Rh6AG346500 Rh6BG353800 Rh6BG353900 Rh6CG360300 Rh6DG346600 Rh6DG346700
rosa_wichuraiana Rw6G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 161
AciI CCGC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 2 cut(s) 56, 488
AgsI TTSAA 3 cut(s) 116, 155, 248
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
ApoI RAATTY 1 cut(s) 243
AspA2I CCTAGG 1 cut(s) 520
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 2 cut(s) 47, 220
AvrII CCTAGG 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 132, 499
BccI CCATC 2 cut(s) 288, 418
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 1 cut(s) 382
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 1 cut(s) 24
BlnI CCTAGG 1 cut(s) 520
Bme1390I CCNGG 2 cut(s) 206, 382
BmrFI CCNGG 2 cut(s) 206, 382
BmsI GCATC 1 cut(s) 398
BpiI GAAGAC 2 cut(s) 132, 499
BpuMI CCSGG 1 cut(s) 382
BsaJI CCNNGG 3 cut(s) 172, 482, 520
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 488
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 172, 482, 520
BseLI CCNNNNNNNGG 2 cut(s) 56, 488
BseMI GCAATG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 442
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 3 cut(s) 19, 112, 364
BslI CCNNNNNNNGG 2 cut(s) 56, 488
BsmFI GGGAC 3 cut(s) 19, 112, 364
BspACI CCGC 1 cut(s) 11
BspMAI CTGCAG 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 81
BssECI CCNNGG 3 cut(s) 172, 482, 520
BssNAI GTATAC 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 172, 482, 520
Bst1107I GTATAC 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 200
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 204, 380
BstSFI CTRYAG 1 cut(s) 24
BstV2I GAAGAC 2 cut(s) 132, 499
BstZ17I GTATAC 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 421
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Csp6I GTAC 1 cut(s) 465
CviAII CATG 2 cut(s) 235, 393
CviJI RGCY 4 cut(s) 204, 251, 364, 525
CviKI_1 RGCY 4 cut(s) 204, 251, 364, 525
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 1 cut(s) 200
Eco130I CCWWGG 3 cut(s) 172, 482, 520
Eco32I GATATC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 3 cut(s) 172, 482, 520
ErhI CCWWGG 3 cut(s) 172, 482, 520
FaeI CATG 2 cut(s) 238, 396
FaqI GGGAC 3 cut(s) 19, 112, 364
FatI CATG 2 cut(s) 234, 392
FblI GTMKAC 1 cut(s) 161
FspBI CTAG 1 cut(s) 521
HapII CCGG 1 cut(s) 382
Hin1II CATG 2 cut(s) 238, 396
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 382
HphI GGTGA 2 cut(s) 47, 220
Hpy166II GTNNAC 2 cut(s) 162, 323
Hpy188I TCNGA 3 cut(s) 280, 301, 444
Hpy8I GTNNAC 2 cut(s) 162, 323
HpyAV CCTTC 4 cut(s) 89, 232, 361, 482
HpyCH4V TGCA 3 cut(s) 26, 144, 459
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 2 cut(s) 238, 396
LpnPI CCDG 4 cut(s) 101, 191, 218, 395
LweI GCATC 1 cut(s) 398
MaeI CTAG 1 cut(s) 521
MaeIII GTNAC 1 cut(s) 208
MboII GAAGA 5 cut(s) 128, 137, 303, 504, 521
MluCI AATT 5 cut(s) 54, 243, 371, 432, 498
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 4 cut(s) 7, 60, 311, 421
MseI TTAA 2 cut(s) 107, 504
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 206, 382
MvaI CCWGG 1 cut(s) 206
NciI CCSGG 1 cut(s) 382
NlaIII CATG 2 cut(s) 238, 396
NmuCI GTSAC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PstI CTGCAG 1 cut(s) 28
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
SaqAI TTAA 2 cut(s) 107, 504
ScrFI CCNGG 2 cut(s) 206, 382
SetI ASST 6 cut(s) 37, 142, 253, 322, 432, 522
SfaNI GCATC 1 cut(s) 398
SfcI CTRYAG 1 cut(s) 24
Sse9I AATT 5 cut(s) 54, 243, 371, 432, 498
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 204, 380
StyI CCWWGG 3 cut(s) 172, 482, 520
TaqI TCGA 2 cut(s) 52, 401
TasI AATT 5 cut(s) 54, 243, 371, 432, 498
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 2 cut(s) 107, 504
Tru9I TTAA 2 cut(s) 107, 504
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 251, 297
TspRI CASTG 1 cut(s) 151
XapI RAATTY 1 cut(s) 243
XmaJI CCTAGG 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 161
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.