Rroxscaffold_7G00174340

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015698
Physical Location & Seq
Forward (+)
14029693 .. 14030655
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174340.1

Sequence Viewer

Length: 963 bp
ATGAGACGCAGTCTGAATACATCTTTGATATTTCTTGTACCAACAAGTTCGAAAACTTGTACCAACAAGTTTTCATGGAGACTTGTGAAAGGTACTCATTATCATGTCTCGGTCAAAAATATGTTGAAGACTATTGCATCGGACCCAAATGTCCTTGCGCTCTGTAATGAAGAAGCTACTGATCCTAACTTGCGAAAGAAGGAAGTACGCCGGTTCCTCGATCCAAGCAGAGAAAGTAGCAGTAGAAATGGAATTACGTTTACGACAATGGATACTAGTACTCTTCATGGAACAGAACAAAACAAGGTGACAGAACTGAAGAGTTTACCTGTTCAACCTGCCAGTTTAGCTCCTCCCTCTAATCTTCTTAGTGCCACCGAAGAAGAAGGCAGTGTTTCTGTGGATACTGGAATGAACCATAACATTACCGATCCTGCTCGAAGTCATGAAGAGTCAAGCTGCAGAACTGAAGTTGATGAGTTCCAAAGCCAATCAAACTTGCCATGTCAAAGGGAGGGGCCGGAATTTCAAGTGCATCCACAATACTCATCATCCTCAATTTATGTTGAAAAAGGCGGCCCTAGTATTAACAATGAAGGCAGTGTCACTGAGAATTTCCTCCATAGAGAACCATCTCCAGGAACTGCTCAAGCTCGAATATTCATCGTCTTGAATGTTTCGTATGTTCCCCCGTGGGGAAGAGATGAACCCTTCACCGCGGACACAATGAAAAGTATGGATGATTCATATGCAAACGAGTCATCAATTGTGCCTGAAACAGGACAGCAGAAGGTGGAGGAGGTGGAGGAGGTGGAGGTTTATGAAGTTGGGGCTAGTGTAGAAGAGCAGCAGCCTGTTGCTAACAGCCAGAGGAAAAGCACAAGGAGCCGTCCGCTGACGAAAAAAGCCTGGGAAGCTCTTGAAAATGAATTCAGCAGTACAAAGAGGAAGAGAAGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RST

Protein Analysis

320

Amino Acids

35.71

Weight (kDa)

5.65

Isoelectric Point (pI)

61.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7650 PF24662 4 - 49 7.4e-07 Domain of unknown function (DUF7650)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00061
prunus_persica Prupe.1G138400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293231
rosa_laevigata RLG00000011966 RLG00000011967
rosa_multiflora Rmu_ssc0000162.1_g000023
rosa_roxburghii Rroxscaffold_7G00174330 Rroxscaffold_7G00174340
rosa_rugosa Rorug06G0233500.1
rosa_samantha Rh6AG346500 Rh6BG353800 Rh6BG353900 Rh6CG360300 Rh6DG346600 Rh6DG346700
rosa_wichuraiana Rw6G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 346
AccII CGCG 1 cut(s) 719
AciI CCGC 4 cut(s) 576, 717, 719, 893
AclWI GGATC 3 cut(s) 176, 215, 425
AcsI RAATTY 3 cut(s) 524, 613, 929
AcuI CTGAAG 2 cut(s) 338, 489
AfaI GTAC 6 cut(s) 39, 61, 94, 207, 280, 940
AfiI CCNNNNNNNGG 3 cut(s) 638, 695, 779
AgsI TTSAA 6 cut(s) 127, 335, 530, 569, 673, 923
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 2 cut(s) 637, 908
AluBI AGCT 5 cut(s) 176, 350, 459, 653, 917
AluI AGCT 5 cut(s) 176, 350, 459, 653, 917
Alw26I GTCTC 2 cut(s) 73, 112
AlwI GGATC 3 cut(s) 176, 215, 425
AlwNI CAGNNNCTG 1 cut(s) 644
AoxI GGCC 2 cut(s) 518, 577
ApeKI GCWGC 3 cut(s) 459, 847, 850
ApoI RAATTY 3 cut(s) 524, 613, 929
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 142, 518, 578
AsuHPI GGTGA 2 cut(s) 319, 706
AsuII TTCGAA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 134
BbvI GCAGC 3 cut(s) 446, 859, 862
BccI CCATC 1 cut(s) 640
BceAI ACGGC 1 cut(s) 873
BciT130I CCWGG 2 cut(s) 639, 910
BciVI GTATCC 2 cut(s) 265, 397
BcoDI GTCTC 2 cut(s) 73, 112
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 3 cut(s) 276, 582, 834
BfmI CTRYAG 1 cut(s) 460
BfuAI ACCTGC 1 cut(s) 346
BfuI GTATCC 2 cut(s) 265, 397
BisI GCNGC 4 cut(s) 460, 577, 848, 851
BlsI GCNGC 4 cut(s) 461, 578, 849, 852
BmcAI AGTACT 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 639, 910
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 3 cut(s) 142, 518, 578
BmiI GGNNCC 4 cut(s) 144, 215, 519, 887
BmrFI CCNGG 2 cut(s) 639, 910
BmsI GCATC 2 cut(s) 146, 544
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 633
BsaJI CCNNGG 3 cut(s) 692, 717, 909
Bsc4I CCNNNNNNNGG 3 cut(s) 638, 695, 779
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 342, 412
BseBI CCWGG 2 cut(s) 639, 910
BseDI CCNNGG 3 cut(s) 692, 717, 909
BseGI GGATG 3 cut(s) 535, 551, 745
BseLI CCNNNNNNNGG 3 cut(s) 638, 695, 779
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 2 cut(s) 342, 412
BseRI GAGGAG 3 cut(s) 342, 812, 821
BseXI GCAGC 3 cut(s) 446, 859, 862
Bsh1236I CGCG 1 cut(s) 719
BshFI GGCC 2 cut(s) 520, 579
BsiSI CCGG 2 cut(s) 211, 521
BslI CCNNNNNNNGG 3 cut(s) 638, 695, 779
BsmAI GTCTC 2 cut(s) 73, 112
BsnI GGCC 2 cut(s) 520, 579
Bsp119I TTCGAA 1 cut(s) 50
Bsp143I GATC 3 cut(s) 181, 220, 430
BspACI CCGC 4 cut(s) 576, 717, 719, 893
BspANI GGCC 2 cut(s) 520, 579
BspCNI CTCAG 1 cut(s) 601
BspFNI CGCG 1 cut(s) 719
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 4 cut(s) 144, 215, 519, 887
BspMAI CTGCAG 1 cut(s) 464
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 3 cut(s) 176, 215, 425
BspQI GCTCTTC 1 cut(s) 837
BspT104I TTCGAA 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 2 cut(s) 342, 412
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 692, 717, 909
BssMI GATC 3 cut(s) 181, 220, 430
Bst2UI CCWGG 2 cut(s) 639, 910
Bst6I CTCTTC 7 cut(s) 288, 314, 444, 694, 837, 944, 949
BstBI TTCGAA 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 368, 609
BstDSI CCRYGG 2 cut(s) 692, 717
BstENI CCTNNNNNAGG 1 cut(s) 777
BstF5I GGATG 3 cut(s) 535, 551, 745
BstFNI CGCG 1 cut(s) 719
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 3 cut(s) 184, 223, 433
BstMAI GTCTC 2 cut(s) 73, 112
BstMBI GATC 3 cut(s) 181, 220, 430
BstMWI GCNNNNNNNGC 3 cut(s) 347, 885, 914
BstNI CCWGG 2 cut(s) 639, 910
BstSCI CCNGG 2 cut(s) 637, 908
BstSFI CTRYAG 1 cut(s) 460
BstUI CGCG 1 cut(s) 719
BstV1I GCAGC 3 cut(s) 446, 859, 862
BstV2I GAAGAC 1 cut(s) 134
BsuI GTATCC 2 cut(s) 265, 397
BsuRI GGCC 2 cut(s) 520, 579
BtgI CCRYGG 2 cut(s) 692, 717
BtsCI GGATG 3 cut(s) 535, 551, 745
BtsI GCAGTG 2 cut(s) 397, 607
BtsIMutI CAGTG 3 cut(s) 397, 606, 607
BveI ACCTGC 1 cut(s) 346
CaiI CAGNNNCTG 1 cut(s) 644
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 142, 518, 578
Cfr42I CCGCGG 1 cut(s) 720
CseI GACGC 1 cut(s) 15
Csp6I GTAC 6 cut(s) 38, 60, 93, 206, 279, 939
CviAII CATG 5 cut(s) 75, 104, 287, 446, 504
CviQI GTAC 6 cut(s) 38, 60, 93, 206, 279, 939
DdeI CTNAG 2 cut(s) 368, 609
DpnI GATC 3 cut(s) 183, 222, 432
DpnII GATC 3 cut(s) 181, 220, 430
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
Eam1104I CTCTTC 7 cut(s) 288, 314, 444, 694, 837, 944, 949
EarI CTCTTC 7 cut(s) 288, 314, 444, 694, 837, 944, 949
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 338, 489
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoRI GAATTC 1 cut(s) 929
EcoRII CCWGG 2 cut(s) 637, 908
FaeI CATG 5 cut(s) 78, 107, 290, 449, 507
FatI CATG 5 cut(s) 74, 103, 286, 445, 503
FauNDI CATATG 1 cut(s) 748
Fnu4HI GCNGC 4 cut(s) 460, 577, 848, 851
FokI GGATG 3 cut(s) 522, 538, 752
Fsp4HI GCNGC 4 cut(s) 460, 577, 848, 851
FspBI CTAG 3 cut(s) 276, 582, 834
GlaI GCGC 1 cut(s) 159
GluI GCNGC 4 cut(s) 460, 577, 848, 851
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 2 cut(s) 520, 579
HapII CCGG 2 cut(s) 211, 521
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 160
Hin1II CATG 5 cut(s) 78, 107, 290, 449, 507
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 3 cut(s) 452, 743, 758
HpaII CCGG 2 cut(s) 211, 521
HphI GGTGA 2 cut(s) 319, 706
Hpy166II GTNNAC 2 cut(s) 261, 326
Hpy188I TCNGA 2 cut(s) 15, 142
Hpy188III TCNNGA 3 cut(s) 446, 670, 920
Hpy8I GTNNAC 2 cut(s) 261, 326
HpyAV CCTTC 5 cut(s) 193, 380, 590, 721, 784
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 4 cut(s) 137, 462, 535, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 885, 914
HpyF3I CTNAG 2 cut(s) 368, 609
HpySE526I ACGT 1 cut(s) 257
Hsp92II CATG 5 cut(s) 78, 107, 290, 449, 507
HspAI GCGC 1 cut(s) 158
KspI CCGCGG 1 cut(s) 720
Kzo9I GATC 3 cut(s) 181, 220, 430
LguI GCTCTTC 1 cut(s) 837
LmnI GCTCC 2 cut(s) 355, 885
Lsp1109I GCAGC 3 cut(s) 446, 859, 862
LweI GCATC 2 cut(s) 146, 544
MaeI CTAG 3 cut(s) 276, 582, 834
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 307, 604
MalI GATC 3 cut(s) 183, 222, 432
MboI GATC 3 cut(s) 181, 220, 430
MfeI CAATTG 1 cut(s) 765
MluCI AATT 6 cut(s) 252, 524, 558, 613, 765, 929
MlyI GAGTC 2 cut(s) 461, 767
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 102
MspA1I CMGCKG 2 cut(s) 719, 895
MspI CCGG 2 cut(s) 211, 521
MspR9I CCNGG 2 cut(s) 639, 910
MunI CAATTG 1 cut(s) 765
MvaI CCWGG 2 cut(s) 639, 910
MvnI CGCG 1 cut(s) 719
MwoI GCNNNNNNNGC 3 cut(s) 347, 885, 914
NdeI CATATG 1 cut(s) 748
NdeII GATC 3 cut(s) 181, 220, 430
NlaIII CATG 5 cut(s) 78, 107, 290, 449, 507
NlaIV GGNNCC 4 cut(s) 144, 215, 519, 887
NmuCI GTSAC 2 cut(s) 307, 604
NspV TTCGAA 1 cut(s) 50
PagI TCATGA 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 837
PfeI GAWTC 1 cut(s) 743
PflFI GACNNNGTC 1 cut(s) 9
PfoI TCCNGGA 1 cut(s) 637
PkrI GCNGC 4 cut(s) 461, 578, 849, 852
PleI GAGTC 2 cut(s) 460, 766
PpsI GAGTC 2 cut(s) 460, 766
Psp6I CCWGG 2 cut(s) 637, 908
PspGI CCWGG 2 cut(s) 637, 908
PspN4I GGNNCC 4 cut(s) 144, 215, 519, 887
PspPI GGNCC 3 cut(s) 142, 518, 578
PstI CTGCAG 1 cut(s) 464
PstNI CAGNNNCTG 1 cut(s) 644
PsyI GACNNNGTC 1 cut(s) 9
RsaI GTAC 6 cut(s) 39, 61, 94, 207, 280, 940
RsaNI GTAC 6 cut(s) 38, 60, 93, 206, 279, 939
RseI CAYNNNNRTG 1 cut(s) 102
SacII CCGCGG 1 cut(s) 720
SapI GCTCTTC 1 cut(s) 837
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 4 cut(s) 460, 577, 848, 851
Sau3AI GATC 3 cut(s) 181, 220, 430
Sau96I GGNCC 3 cut(s) 142, 518, 578
ScaI AGTACT 1 cut(s) 280
SchI GAGTC 2 cut(s) 461, 767
ScrFI CCNGG 2 cut(s) 639, 910
SfaNI GCATC 2 cut(s) 146, 544
SfcI CTRYAG 1 cut(s) 460
Sfr303I CCGCGG 1 cut(s) 720
SfuI TTCGAA 1 cut(s) 50
SgrBI CCGCGG 1 cut(s) 720
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 648
SmoI CTYRAG 1 cut(s) 648
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 6 cut(s) 252, 524, 558, 613, 765, 929
SsiI CCGC 4 cut(s) 576, 717, 719, 893
SspI AATATT 1 cut(s) 660
SspMI CTAG 3 cut(s) 276, 582, 834
StyD4I CCNGG 2 cut(s) 637, 908
TaiI ACGT 1 cut(s) 260
TaqI TCGA 4 cut(s) 50, 219, 439, 655
TaqII GACCGA 1 cut(s) 100
TasI AATT 6 cut(s) 252, 524, 558, 613, 765, 929
TatI WGTACW 2 cut(s) 278, 938
TauI GCSGC 1 cut(s) 579
TfiI GAWTC 1 cut(s) 743
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 3 cut(s) 397, 607, 613
TseFI GTSAC 2 cut(s) 307, 604
TseI GCWGC 3 cut(s) 459, 847, 850
Tsp45I GTSAC 2 cut(s) 307, 604
TspRI CASTG 3 cut(s) 397, 607, 613
Tth111I GACNNNGTC 1 cut(s) 9
VpaK11BI GGWCC 1 cut(s) 142
XagI CCTNNNNNAGG 1 cut(s) 777
XapI RAATTY 3 cut(s) 524, 613, 929
XspI CTAG 3 cut(s) 276, 582, 834
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.