Rroxscaffold_7G00174330

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015698
Physical Location & Seq
Forward (+)
14028788 .. 14029588
801 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00174330.1

Sequence Viewer

Length: 651 bp
ATGGGGATTGCGGAGGATAGTTCTGCAGAGCAAGGTGATGATTTCACTCCTCGAATTGGTAATGACTATCAAGCAATGATTCCACCCCTGCGTGAAGGGATTATATTAAGTATTGAAGAAGCAGAAGACATACTTCCAACTTGCGGTGTTATTGAAAAGTATACATTTCTTTTTGGACTATATATATTTGGGAAAAATCTTAGCCTGGTAACGAGATTTGTTGGAAATAAGAACATGAAGGAAATTCAAGCTCTCTACTATGGAGAGTTCTATGCTTCTGATGAATATAGAAGATGGTCAGAGTGGGGAAAGTGGAGAGGTAAACGCTGTATATTTGGGGAAAAACTATTTACATATTGTAGGCTGAATGAATTGTTGTCCCGGTTGTTGCCATGTGTGTCGAAGCGATGCCAAGATGTGTTGATGGAGATTTCTAGAAATTTTATAAAGGAAAAGATTTCCTTTGAAGACTACATATTCAAGTTGAAGGATTCTGTTGGTCTTCTCTTGCTTATTGAAGCAGTTGGTATTGGAAAAGAAGGGAAGGAAAACCTTACAAGCACTGCTTTTGAGCCAATATCGTCTGGCAAAGATTGGTCCTCTGTTACACCTGCAGAAATTCTGAAGTTTCTAAAAGCTTCAAGCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.6

Weight (kDa)

5.32

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7952 PF25826 51 - 178 1.6e-50 Domain of unknown function (DUF7952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015698)

Species Orthologous Gene IDs
fragaria_vesca FvH4_c6g00061
prunus_persica Prupe.1G138400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0293231
rosa_laevigata RLG00000011966 RLG00000011967
rosa_multiflora Rmu_ssc0000162.1_g000023
rosa_roxburghii Rroxscaffold_7G00174330 Rroxscaffold_7G00174340
rosa_rugosa Rorug06G0233500.1
rosa_samantha Rh6AG346500 Rh6BG353800 Rh6BG353900 Rh6CG360300 Rh6DG346600 Rh6DG346700
rosa_wichuraiana Rw6G030160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AarI CACCTGC 1 cut(s) 619
Acc36I ACCTGC 1 cut(s) 619
AccI GTMKAC 1 cut(s) 161
AciI CCGC 3 cut(s) 11, 144, 645
AcsI RAATTY 3 cut(s) 243, 439, 618
AcuI CTGAAG 1 cut(s) 644
AfiI CCNNNNNNNGG 2 cut(s) 56, 143
AgsI TTSAA 8 cut(s) 116, 155, 248, 467, 481, 487, 518, 642
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 2 cut(s) 251, 638
AluI AGCT 2 cut(s) 251, 638
ApoI RAATTY 3 cut(s) 243, 439, 618
AspS9I GGNCC 1 cut(s) 597
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 47
AvaII GGWCC 1 cut(s) 597
BbsI GAAGAC 3 cut(s) 132, 474, 494
BccI CCATC 2 cut(s) 288, 418
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 1 cut(s) 382
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 2 cut(s) 24, 612
BfuAI ACCTGC 1 cut(s) 619
Bme1390I CCNGG 2 cut(s) 206, 382
Bme18I GGWCC 1 cut(s) 597
BmgT120I GGNCC 1 cut(s) 597
BmrFI CCNGG 2 cut(s) 206, 382
BmsI GCATC 1 cut(s) 398
BpiI GAAGAC 3 cut(s) 132, 474, 494
BpuMI CCSGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 143
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 56, 143
BseMI GCAATG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 2 cut(s) 56, 143
BsmFI GGGAC 1 cut(s) 364
BspACI CCGC 3 cut(s) 11, 144, 645
BspMAI CTGCAG 2 cut(s) 28, 616
BspMI ACCTGC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 81
BssNAI GTATAC 1 cut(s) 162
Bst1107I GTATAC 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 200
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 204, 380
BstSFI CTRYAG 2 cut(s) 24, 612
BstV2I GAAGAC 3 cut(s) 132, 474, 494
BstZ17I GTATAC 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 421
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 1 cut(s) 561
BveI ACCTGC 1 cut(s) 619
Cfr13I GGNCC 1 cut(s) 597
CviAII CATG 2 cut(s) 235, 393
CviJI RGCY 5 cut(s) 204, 251, 364, 574, 638
CviKI_1 RGCY 5 cut(s) 204, 251, 364, 574, 638
DdeI CTNAG 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 597
Eco57I CTGAAG 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 238, 396
FalI AAGNNNNNCTT 6 cut(s) 117, 149, 446, 478, 550, 582
FaqI GGGAC 1 cut(s) 364
FatI CATG 2 cut(s) 234, 392
FblI GTMKAC 1 cut(s) 161
FspBI CTAG 1 cut(s) 435
HapII CCGG 1 cut(s) 382
Hin1II CATG 2 cut(s) 238, 396
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 2 cut(s) 79, 491
HpaII CCGG 1 cut(s) 382
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 162, 323
Hpy188I TCNGA 3 cut(s) 280, 301, 624
Hpy188III TCNNGA 1 cut(s) 435
Hpy8I GTNNAC 2 cut(s) 162, 323
HpyAV CCTTC 5 cut(s) 89, 232, 481, 533, 538
HpyCH4V TGCA 2 cut(s) 26, 614
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 2 cut(s) 238, 396
LpnPI CCDG 6 cut(s) 101, 191, 218, 395, 570, 624
LweI GCATC 1 cut(s) 398
MaeI CTAG 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 208, 604
MboII GAAGA 5 cut(s) 128, 137, 303, 479, 494
MluCI AATT 5 cut(s) 54, 243, 371, 439, 618
MmeI TCCRAC 2 cut(s) 161, 202
MnlI CCTC 4 cut(s) 7, 60, 311, 610
MseI TTAA 2 cut(s) 107, 649
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 206, 382
MvaI CCWGG 1 cut(s) 206
NciI CCSGG 1 cut(s) 382
NlaIII CATG 2 cut(s) 238, 396
PaqCI CACCTGC 1 cut(s) 619
PfeI GAWTC 2 cut(s) 79, 491
PsiI TTATAA 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspPI GGNCC 1 cut(s) 597
PstI CTGCAG 2 cut(s) 28, 616
SaqAI TTAA 2 cut(s) 107, 649
Sau96I GGNCC 1 cut(s) 597
ScrFI CCNGG 2 cut(s) 206, 382
SetI ASST 6 cut(s) 37, 253, 322, 555, 613, 640
SfaNI GCATC 1 cut(s) 398
SfcI CTRYAG 2 cut(s) 24, 612
SinI GGWCC 1 cut(s) 597
Sse9I AATT 5 cut(s) 54, 243, 371, 439, 618
SsiI CCGC 3 cut(s) 11, 144, 645
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 204, 380
TaqI TCGA 2 cut(s) 52, 401
TasI AATT 5 cut(s) 54, 243, 371, 439, 618
TfiI GAWTC 2 cut(s) 79, 491
Tru1I TTAA 2 cut(s) 107, 649
Tru9I TTAA 2 cut(s) 107, 649
TscAI CASTG 1 cut(s) 568
TspDTI ATGAA 3 cut(s) 251, 297, 384
TspRI CASTG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 597
XapI RAATTY 3 cut(s) 243, 439, 618
XbaI TCTAGA 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 161
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.