Prupe.1G232200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015714
Physical Location & Seq
Forward (+)
24704741 .. 24704995
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G232200.1

Sequence Viewer

Length: 255 bp
TCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTGGGCCATCGGCCCACACGATATTAAATTAATTTCTTTAAGGGGAGGGCCCAACACAGTAGCTTGCTACTGGGGTCTTCGCGCGTCGCCTCTGCGTTGCACTGCTGCATTGGCCTGGCGCACCCTCCAACTCCAGTTCAAAATGCTTAAAATGCCAGCCATCTCAACCGTAACTCTATGCTTAAACAGGAAGCCAATCTTGATATTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.25

Weight (kDa)

10.21

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 123, 125
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AoxI GGCC 4 cut(s) 45, 52, 89, 153
ApaI GGGCCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 146
AseI ATTAAT 1 cut(s) 71
AspLEI GCGC 2 cut(s) 125, 162
AspS9I GGNCC 4 cut(s) 45, 53, 89, 90
BaeGI GKGCMC 1 cut(s) 93
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 133
BccI CCATC 2 cut(s) 56, 209
BciT130I CCWGG 1 cut(s) 157
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 157
BmgT120I GGNCC 4 cut(s) 45, 53, 89, 90
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 116, 175
BseBI CCWGG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 116, 175
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 1 cut(s) 133
Bsh1236I CGCG 2 cut(s) 123, 125
BshFI GGCC 4 cut(s) 47, 54, 91, 155
BsnI GGCC 4 cut(s) 47, 54, 91, 155
Bsp120I GGGCCC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 93
BspANI GGCC 4 cut(s) 47, 54, 91, 155
BspFNI CGCG 2 cut(s) 123, 125
BspLI GGNNCC 1 cut(s) 91
BsrI ACTGG 2 cut(s) 116, 175
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 100, 211
BstBAI YACGTR 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 106, 198
BstFNI CGCG 2 cut(s) 123, 125
BstHHI GCGC 2 cut(s) 125, 162
BstMWI GCNNNNNNNGC 2 cut(s) 152, 193
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 2 cut(s) 123, 125
BstV1I GCAGC 1 cut(s) 133
BstV2I GAAGAC 1 cut(s) 110
BsuRI GGCC 4 cut(s) 47, 54, 91, 155
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 106, 198
CfoI GCGC 2 cut(s) 125, 162
Cfr13I GGNCC 4 cut(s) 45, 53, 89, 90
CseI GACGC 1 cut(s) 114
CviJI RGCY 7 cut(s) 47, 54, 91, 104, 155, 200, 235
CviKI_1 RGCY 7 cut(s) 47, 54, 91, 104, 155, 200, 235
Eco24I GRGCYC 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 93
FaiI YATR 1 cut(s) 220
FalI AAGNNNNNCTT 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 147
GlaI GCGC 2 cut(s) 124, 161
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 4 cut(s) 47, 54, 91, 155
HgaI GACGC 1 cut(s) 114
HhaI GCGC 2 cut(s) 125, 162
Hin6I GCGC 2 cut(s) 123, 160
HinP1I GCGC 2 cut(s) 123, 160
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 100, 211
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 141, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 193
HpySE526I ACGT 1 cut(s) 41
HspAI GCGC 2 cut(s) 123, 160
LpnPI CCDG 6 cut(s) 97, 142, 169, 188, 210, 214
Lsp1109I GCAGC 1 cut(s) 133
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 211
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 2 cut(s) 68, 72
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 3 cut(s) 80, 141, 176
MseI TTAA 6 cut(s) 29, 66, 71, 80, 189, 224
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 2 cut(s) 123, 125
MwoI GCNNNNNNNGC 2 cut(s) 152, 193
NlaIV GGNNCC 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PkrI GCNGC 1 cut(s) 148
Ppu21I YACGTR 1 cut(s) 42
PshBI ATTAAT 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 91
PspOMI GGGCCC 1 cut(s) 89
PspPI GGNCC 4 cut(s) 45, 53, 89, 90
PsrI GAACNNNNNNTAC 1 cut(s) 32
SaqAI TTAA 6 cut(s) 29, 66, 71, 80, 189, 224
SatI GCNGC 1 cut(s) 147
Sau96I GGNCC 4 cut(s) 45, 53, 89, 90
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 93
SetI ASST 2 cut(s) 44, 106
Sse9I AATT 2 cut(s) 68, 72
StyD4I CCNGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 100, 211
TaiI ACGT 1 cut(s) 44
TasI AATT 2 cut(s) 68, 72
Tru1I TTAA 6 cut(s) 29, 66, 71, 80, 189, 224
Tru9I TTAA 6 cut(s) 29, 66, 71, 80, 189, 224
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 146
TspRI CASTG 1 cut(s) 148
VspI ATTAAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.