Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0015714

Physical Location & Seq

Genomic Coordinates Forward (+)

21161193 .. 21161579

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTTTGAACTGGTAAGTCTTGCACTCAATTCATCGTGTGTAGCAAAACGGATTGAGCTCTCACTCAATTTATATCCCATATTATATTTTCCATGGGGTCTCTCAGCTCGTGAAAGTTGTGTAGTAAGGGCTATAAAAGGGAGCGAGCAGCAGCGTTGCAACATACTTACCTGGACGGGGTCAATGAGCGATCGGGAAGGCTCATGGCCTAGGTTGGTGACCTTCATTGCACTTAGAAGGGGTGCCTGCTTAAGGTCTCCCCAAGTGGGAGAGCCTACGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.52

Weight (kDa)

9.2

Isoelectric Point (pI)

67.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015714)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G098500_v2.0.a1 Prupe.1G113700_v2.0.a1 Prupe.1G117400_v2.0.a1 Prupe.1G135800_v2.0.a1 Prupe.1G136000_v2.0.a1 Prupe.1G136100_v2.0.a1 Prupe.1G136200_v2.0.a1 Prupe.1G232200_v2.0.a1 Prupe.1G384200_v2.0.a1 Prupe.2G064500_v2.0.a1 Prupe.2G226800_v2.0.a1 Prupe.6G338200_v2.0.a1 Prupe.8G172200_v2.0.a1
pyrus_communis	pycom04g19430 pycom16g14190
rosa_laevigata	RLG00000025384

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	177, 252, 266
AflII	CTTAAG	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	58, 107
AluI	AGCT	2 cut(s)	58, 107
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	104, 261
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	148, 151
AspA2I	CCTAGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	229
AvrII	CCTAGG	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	160, 163
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	104, 261
BfaI	CTAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	250
BisI	GCNGC	2 cut(s)	149, 152
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	2 cut(s)	150, 153
Bme1390I	CCNGG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	172
BsaI	GGTCTC	2 cut(s)	104, 261
BsaJI	CCNNGG	2 cut(s)	92, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 252, 266
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	92, 209
BseLI	CCNNNNNNNGG	3 cut(s)	177, 252, 266
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	160, 163
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	208
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	60
BslI	CCNNNNNNNGG	3 cut(s)	177, 252, 266
BsmAI	GTCTC	2 cut(s)	104, 261
BsnI	GGCC	1 cut(s)	208
Bso31I	GGTCTC	2 cut(s)	104, 261
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	1 cut(s)	92
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	250
BspTNI	GGTCTC	2 cut(s)	104, 261
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	92, 209
BssMI	GATC	1 cut(s)	190
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	92, 209
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	172
BstAFI	CTTAAG	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	146, 247
BstDEI	CTNAG	2 cut(s)	103, 233
BstDSI	CCRYGG	1 cut(s)	92
BstEII	GGTNACC	1 cut(s)	217
BstENI	CCTNNNNNAGG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	104, 261
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	172
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	160, 163
BsuRI	GGCC	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	146, 247
CviAII	CATG	2 cut(s)	93, 204
CviJI	RGCY	6 cut(s)	58, 107, 131, 201, 208, 274
CviKI_1	RGCY	6 cut(s)	58, 107, 131, 201, 208, 274
DdeI	CTNAG	2 cut(s)	103, 233
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	92, 209
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	2 cut(s)	104, 261
Eco53kI	GAGCTC	1 cut(s)	58
Eco91I	GGTNACC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	2 cut(s)	92, 209
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	92, 209
FaeI	CATG	2 cut(s)	96, 207
FaiI	YATR	8 cut(s)	73, 80, 85, 94, 134, 164, 205, 283
FatI	CATG	2 cut(s)	92, 203
Fnu4HI	GCNGC	2 cut(s)	149, 152
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	149, 152
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	2 cut(s)	149, 152
HaeIII	GGCC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	96, 207
HphI	GGTGA	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	110, 194
HpyAV	CCTTC	3 cut(s)	191, 231, 232
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	23, 159, 230
HpyF3I	CTNAG	2 cut(s)	103, 233
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	96, 207
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	3 cut(s)	157, 184, 259
Lsp1109I	GCAGC	2 cut(s)	160, 163
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	2 cut(s)	28, 67
MseI	TTAA	1 cut(s)	251
MspCI	CTTAAG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	96, 207
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	217
PflFI	GACNNNGTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	150, 153
Ple19I	CGATCG	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	170
PspEI	GGTNACC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	244
PsyI	GACNNNGTC	1 cut(s)	178
PvuI	CGATCG	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	2 cut(s)	149, 152
Sau3AI	GATC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	7 cut(s)	60, 109, 173, 215, 224, 257, 281
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	28, 67
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	2 cut(s)	92, 209
TaiI	ACGT	1 cut(s)	281
TasI	AATT	2 cut(s)	28, 67
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	148, 151
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	21, 214
TspGWI	ACGGA	1 cut(s)	64
Tth111I	GACNNNGTC	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	250
XagI	CCTNNNNNAGG	1 cut(s)	250
XmaJI	CCTAGG	1 cut(s)	209
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.