pycom16g14190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015714
Physical Location & Seq
Forward (+)
10224756 .. 10225142
387 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g14190.1

Sequence Viewer

Length: 345 bp
ATGATTCACAAGTATCAGCTCTCGCGGCAAGACGTTTTGTTTTTTGTAAGGTTAGAATCCCACATCGGCCGCGCAAGAGAAGTGAGCAACATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTGGACCAATGGTTCACACGATATTAAATTTATTTTTTTAGGGGGAGGGTCCATGACGGTAGCTTGCTGCTGGGATCCTCGCGTGTCGCCCAAGCGTTGCACTACTGCTCGGGCTGGCGCACCCCACCAAAGTGAGTTAAAATTTTATTTAGCCGTAAGAAGGTTTGAACGACAGTTGAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.02

Weight (kDa)

10.04

Isoelectric Point (pI)

62.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 25, 72, 240
AciI CCGC 2 cut(s) 25, 70
AclWI GGATC 2 cut(s) 227, 240
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 185, 299
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 1 cut(s) 326
AleI CACNNNNGTG 1 cut(s) 288
AloI GAACNNNNNNTCC 2 cut(s) 154, 186
AluBI AGCT 2 cut(s) 19, 221
AluI AGCT 2 cut(s) 19, 221
AlwI GGATC 2 cut(s) 227, 240
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 2 cut(s) 67, 102
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 2 cut(s) 185, 299
AspLEI GCGC 2 cut(s) 74, 278
AspS9I GGNCC 2 cut(s) 162, 207
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 2 cut(s) 162, 207
BamHI GGATCC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 296
BisI GCNGC 3 cut(s) 26, 70, 226
BlsI GCNGC 3 cut(s) 27, 71, 227
Bme18I GGWCC 2 cut(s) 162, 207
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 162, 207
BmiI GGNNCC 2 cut(s) 208, 234
BsaAI YACGTR 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 318
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 212
BseYI CCCAGC 1 cut(s) 228
Bsh1236I CGCG 3 cut(s) 25, 72, 240
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 2 cut(s) 69, 104
BsiEI CGRYCG 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 318
BsnI GGCC 2 cut(s) 69, 104
BsoBI CYCGRG 1 cut(s) 267
Bsp143I GATC 2 cut(s) 116, 232
BspACI CCGC 2 cut(s) 25, 70
BspANI GGCC 2 cut(s) 69, 104
BspFNI CGCG 3 cut(s) 25, 72, 240
BspLI GGNNCC 2 cut(s) 208, 234
BspPI GGATC 2 cut(s) 227, 240
BssMI GATC 2 cut(s) 116, 232
Bst4CI ACNGT 2 cut(s) 217, 333
BstBAI YACGTR 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 223, 274
BstDEI CTNAG 1 cut(s) 113
BstFNI CGCG 3 cut(s) 25, 72, 240
BstHHI GCGC 2 cut(s) 74, 278
BstKTI GATC 2 cut(s) 119, 235
BstMBI GATC 2 cut(s) 116, 232
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstUI CGCG 3 cut(s) 25, 72, 240
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BstZI CGGCCG 1 cut(s) 67
BsuRI GGCC 2 cut(s) 69, 104
Cac8I GCNNGC 2 cut(s) 223, 274
CfoI GCGC 2 cut(s) 74, 278
Cfr13I GGNCC 2 cut(s) 162, 207
CviAII CATG 1 cut(s) 211
CviJI RGCY 7 cut(s) 19, 69, 104, 112, 221, 272, 311
CviKI_1 RGCY 7 cut(s) 19, 69, 104, 112, 221, 272, 311
DdeI CTNAG 1 cut(s) 113
DpnI GATC 2 cut(s) 118, 234
DpnII GATC 2 cut(s) 116, 232
EaeI YGGCCR 1 cut(s) 67
EagI CGGCCG 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 162, 207
Eco52I CGGCCG 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 267
FaeI CATG 1 cut(s) 214
FaiI YATR 2 cut(s) 92, 212
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 26, 70, 226
Fsp4HI GCNGC 3 cut(s) 26, 70, 226
GlaI GCGC 2 cut(s) 73, 277
GluI GCNGC 3 cut(s) 26, 70, 226
GsaI CCCAGC 1 cut(s) 232
HaeIII GGCC 2 cut(s) 69, 104
HhaI GCGC 2 cut(s) 74, 278
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 2 cut(s) 72, 276
HinP1I GCGC 2 cut(s) 72, 276
HinfI GANTC 2 cut(s) 4, 56
Hpy166II GTNNAC 2 cut(s) 162, 173
Hpy188I TCNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 162, 173
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 2 cut(s) 217, 333
HpyCH4IV ACGT 2 cut(s) 33, 158
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 33, 158
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 2 cut(s) 72, 276
Kzo9I GATC 2 cut(s) 116, 232
LpnPI CCDG 2 cut(s) 214, 258
Lsp1109I GCAGC 1 cut(s) 212
MaeII ACGT 2 cut(s) 33, 158
MalI GATC 2 cut(s) 118, 234
MboI GATC 2 cut(s) 116, 232
MflI RGATCY 1 cut(s) 232
MluCI AATT 2 cut(s) 185, 299
MnlI CCTC 2 cut(s) 197, 246
MseI TTAA 3 cut(s) 146, 183, 296
MslI CAYNNNNRTG 1 cut(s) 288
MvnI CGCG 3 cut(s) 25, 72, 240
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 2 cut(s) 116, 232
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 2 cut(s) 208, 234
NmeAIII GCCGAG 1 cut(s) 80
OliI CACNNNNGTG 1 cut(s) 288
PfeI GAWTC 2 cut(s) 4, 56
PkrI GCNGC 3 cut(s) 27, 71, 227
Ppu21I YACGTR 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 208, 234
PspPI GGNCC 2 cut(s) 162, 207
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
PsuI RGATCY 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 3 cut(s) 146, 183, 296
SatI GCNGC 3 cut(s) 26, 70, 226
Sau3AI GATC 2 cut(s) 116, 232
Sau96I GGNCC 2 cut(s) 162, 207
SetI ASST 7 cut(s) 21, 36, 53, 97, 161, 223, 323
SinI GGWCC 2 cut(s) 162, 207
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 2 cut(s) 185, 299
SsiI CCGC 2 cut(s) 25, 70
TaaI ACNGT 2 cut(s) 217, 333
TaiI ACGT 2 cut(s) 36, 161
TasI AATT 2 cut(s) 185, 299
TauI GCSGC 2 cut(s) 28, 72
TfiI GAWTC 2 cut(s) 4, 56
Tru1I TTAA 3 cut(s) 146, 183, 296
Tru9I TTAA 3 cut(s) 146, 183, 296
TseI GCWGC 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 162, 207
XapI RAATTY 2 cut(s) 185, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.