Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015714

Physical Location & Seq

Genomic Coordinates Reverse (-)

45441509 .. 45441952

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025384

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGTGAAATGGCAAGGCCCTACAGCTATTGCATGGGTATTCAATCTGTGACCAAAAGGGTAAAGGATAATTATTGGGATCCCACTCCAAGTAAGAAGATGAACTCAAAGCTCTGGCTTTCGATCTTTGGGGTCTATACCCAGCGACATAAGCATATATTTTGTTGCCCAAACAGGGTTCTGTCAGTGGTGCTTGTGTTCCACATCGGTGTCAAGCGACTGAGAAGGTTCAAAGACGAGTATAAAAACAGCAAGGATGCACAAGAAAAAGTACTTACCTGGACGGGGTCAATGGACGATCAAGAAGGTTCATGGCCTAGGTTTGTGACCTCCATTGCACTTCGGAGGGGTGCTCGCCTATGGTCTCCTCATAGTAGGAGAGCCAACGTCATAATTTCTTGCTGTGGGGGCTTGCGTTCGCGCAGCCCCTGCCTCAAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

17.16

Weight (kDa)

10.12

Isoelectric Point (pI)

69.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015714)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G098500_v2.0.a1 Prupe.1G113700_v2.0.a1 Prupe.1G117400_v2.0.a1 Prupe.1G135800_v2.0.a1 Prupe.1G136000_v2.0.a1 Prupe.1G136100_v2.0.a1 Prupe.1G136200_v2.0.a1 Prupe.1G232200_v2.0.a1 Prupe.1G384200_v2.0.a1 Prupe.2G064500_v2.0.a1 Prupe.2G226800_v2.0.a1 Prupe.6G338200_v2.0.a1 Prupe.8G172200_v2.0.a1
pyrus_communis	pycom04g19430 pycom16g14190
rosa_laevigata	RLG00000025384

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	421
AclWI	GGATC	2 cut(s)	74, 87
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	175, 285
AgsI	TTSAA	2 cut(s)	44, 232
AjnI	CCWGG	1 cut(s)	278
AleI	CACNNNNGTG	1 cut(s)	207
AluBI	AGCT	2 cut(s)	27, 112
AluI	AGCT	2 cut(s)	27, 112
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	74, 87
AlwNI	CAGNNNCTG	1 cut(s)	429
AoxI	GGCC	2 cut(s)	17, 314
ApeKI	GCWGC	1 cut(s)	423
AspA2I	CCTAGG	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	18
AvrII	CCTAGG	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	435
BciT130I	CCWGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	1 cut(s)	424
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	425
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 285
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	175, 285
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	435
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	19, 316
BsiHKAI	GWGCWC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	175, 285
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	19, 316
Bso31I	GGTCTC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	79, 123, 298
BspANI	GGCC	2 cut(s)	19, 316
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	74, 87
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	3 cut(s)	79, 123, 298
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	355, 413
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	3 cut(s)	82, 126, 301
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	3 cut(s)	79, 123, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 408, 429
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	19, 316
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	355, 413
CaiI	CAGNNNCTG	1 cut(s)	429
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	34, 312
CviJI	RGCY	8 cut(s)	19, 27, 112, 118, 316, 383, 411, 426
CviKI_1	RGCY	8 cut(s)	19, 27, 112, 118, 316, 383, 411, 426
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	3 cut(s)	81, 125, 300
DpnII	GATC	3 cut(s)	79, 123, 298
Eco130I	CCWWGG	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	37, 315
FatI	CATG	2 cut(s)	33, 311
Fnu4HI	GCNGC	1 cut(s)	424
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	1 cut(s)	424
GsaI	CCCAGC	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	19, 316
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	2 cut(s)	37, 315
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	219, 299
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	33, 260, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 408, 429
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	37, 315
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	79, 123, 298
LpnPI	CCDG	5 cut(s)	100, 155, 160, 265, 292
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	49, 325
MalI	GATC	3 cut(s)	81, 125, 300
MboI	GATC	3 cut(s)	79, 123, 298
MboII	GAAGA	1 cut(s)	109
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	2 cut(s)	70, 393
MnlI	CCTC	4 cut(s)	339, 340, 378, 443
MslI	CAYNNNNRTG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	3 cut(s)	151, 408, 429
NdeII	GATC	3 cut(s)	79, 123, 298
NlaIII	CATG	2 cut(s)	37, 315
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	49, 325
OliI	CACNNNNGTG	1 cut(s)	207
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	286
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	207
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	3 cut(s)	79, 123, 298
Sau96I	GGNCC	1 cut(s)	18
ScaI	AGTACT	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	8 cut(s)	29, 114, 230, 281, 310, 323, 332, 390
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	70, 393
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	317
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	70, 393
TatI	WGTACW	1 cut(s)	271
TscAI	CASTG	1 cut(s)	192
TseFI	GTSAC	2 cut(s)	49, 325
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	2 cut(s)	49, 325
TspDTI	ATGAA	2 cut(s)	116, 300
TspRI	CASTG	1 cut(s)	192
Tth111I	GACNNNGTC	1 cut(s)	286
XmaJI	CCTAGG	1 cut(s)	317
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.