WRKY transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69810 AT1G69810 |
| fragaria_vesca | FvH4_4g31790 FvH4_4g31790 FvH4_4g31790 |
| malus_domestica | MD13G1077900.v1.1 MD16G1077700.v1.1 |
| prunus_persica | Prupe.1G269200_v2.0.a1 Prupe.1G269200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0440391 |
| rosa_laevigata | RLG00000006186 |
| rosa_multiflora | Rmu_co8279817.1_g000001 Rmu_co8317961.1_g000001 Rmu_sc0000938.1_g000002 Rmu_sc0001685.1_g000047 |
| rosa_roxburghii | Rroxscaffold_5G00381260 |
| rosa_rugosa | Rorug04G0325900 |
| rosa_samantha | Rh4AG377100 Rh4BG390100 Rh4CG404900 Rh4DG383800 |
| rosa_wichuraiana | Rw4G032290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1876 |
| AccB1I | GGYRCC | 1 cut(s) | 1135 |
| AciI | CCGC | 4 cut(s) | 708, 1074, 1079, 1128 |
| AclWI | GGATC | 2 cut(s) | 428, 441 |
| AcoI | YGGCCR | 1 cut(s) | 743 |
| AcsI | RAATTY | 5 cut(s) | 49, 685, 1198, 1252, 1667 |
| AcuI | CTGAAG | 4 cut(s) | 362, 690, 1076, 1159 |
| AfaI | GTAC | 7 cut(s) | 121, 926, 1180, 1186, 1479, 1547, 1711 |
| AflIII | ACRYGT | 2 cut(s) | 990, 1355 |
| AjiI | CACGTC | 1 cut(s) | 1358 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 30 |
| Alw21I | GWGCWC | 1 cut(s) | 285 |
| Alw26I | GTCTC | 6 cut(s) | 378, 705, 946, 1101, 1364, 1619 |
| AlwI | GGATC | 2 cut(s) | 428, 441 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 656 |
| Ama87I | CYCGRG | 1 cut(s) | 918 |
| AoxI | GGCC | 3 cut(s) | 743, 1059, 1120 |
| ApeKI | GCWGC | 9 cut(s) | 636, 653, 705, 933, 1076, 1319, 1448, 1685, 1688 |
| ApoI | RAATTY | 5 cut(s) | 49, 685, 1198, 1252, 1667 |
| AseI | ATTAAT | 1 cut(s) | 1001 |
| AspLEI | GCGC | 1 cut(s) | 1877 |
| AsuHPI | GGTGA | 2 cut(s) | 599, 936 |
| AvaI | CYCGRG | 1 cut(s) | 918 |
| BalI | TGGCCA | 1 cut(s) | 745 |
| BamHI | GGATCC | 1 cut(s) | 433 |
| BanI | GGYRCC | 1 cut(s) | 1135 |
| BanII | GRGCYC | 2 cut(s) | 256, 285 |
| BauI | CACGAG | 1 cut(s) | 450 |
| BbsI | GAAGAC | 6 cut(s) | 84, 141, 222, 389, 770, 1318 |
| Bbv12I | GWGCWC | 1 cut(s) | 285 |
| BbvI | GCAGC | 9 cut(s) | 623, 640, 692, 920, 1063, 1331, 1460, 1675, 1697 |
| BccI | CCATC | 9 cut(s) | 95, 127, 857, 955, 1038, 1115, 1148, 1274, 1297 |
| BceAI | ACGGC | 1 cut(s) | 211 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 635, 669 |
| BclI | TGATCA | 3 cut(s) | 454, 526, 658 |
| BcoDI | GTCTC | 6 cut(s) | 378, 705, 946, 1101, 1364, 1619 |
| BfaI | CTAG | 5 cut(s) | 438, 561, 750, 819, 837 |
| BfmI | CTRYAG | 4 cut(s) | 637, 1317, 1446, 1785 |
| BmcAI | AGTACT | 2 cut(s) | 1186, 1479 |
| BmeT110I | CYCGRG | 1 cut(s) | 918 |
| BmgBI | CACGTC | 1 cut(s) | 1358 |
| BmiI | GGNNCC | 2 cut(s) | 435, 1137 |
| BmrI | ACTGGG | 2 cut(s) | 950, 1746 |
| BmsI | GCATC | 9 cut(s) | 213, 372, 830, 835, 846, 857, 1777, 1805, 1886 |
| BmuI | ACTGGG | 2 cut(s) | 950, 1746 |
| BpiI | GAAGAC | 6 cut(s) | 84, 141, 222, 389, 770, 1318 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 243, 275 |
| Bpu10I | CCTNAGC | 1 cut(s) | 500 |
| BpuEI | CTTGAG | 2 cut(s) | 245, 502 |
| BsaI | GGTCTC | 1 cut(s) | 705 |
| BsaJI | CCNNGG | 9 cut(s) | 58, 126, 159, 505, 717, 1056, 1131, 1162, 1427 |
| Bse1I | ACTGG | 5 cut(s) | 71, 370, 630, 956, 1741 |
| Bse3DI | GCAATG | 2 cut(s) | 30, 1409 |
| BseDI | CCNNGG | 9 cut(s) | 58, 126, 159, 505, 717, 1056, 1131, 1162, 1427 |
| BseGI | GGATG | 6 cut(s) | 155, 547, 787, 872, 947, 1030 |
| BseMI | GCAATG | 2 cut(s) | 30, 1409 |
| BseMII | CTCAG | 2 cut(s) | 33, 726 |
| BseNI | ACTGG | 5 cut(s) | 71, 370, 630, 956, 1741 |
| BseRI | GAGGAG | 7 cut(s) | 1093, 1372, 1566, 1569, 1572, 1575, 1590 |
| BseXI | GCAGC | 9 cut(s) | 623, 640, 692, 920, 1063, 1331, 1460, 1675, 1697 |
| BsgI | GTGCAG | 2 cut(s) | 919, 1674 |
| BshFI | GGCC | 3 cut(s) | 745, 1061, 1122 |
| BshNI | GGYRCC | 1 cut(s) | 1135 |
| BsiHKAI | GWGCWC | 1 cut(s) | 285 |
| BsiHKCI | CYCGRG | 1 cut(s) | 918 |
| BslFI | GGGAC | 1 cut(s) | 481 |
| BsmAI | GTCTC | 6 cut(s) | 378, 705, 946, 1101, 1364, 1619 |
| BsmBI | CGTCTC | 1 cut(s) | 1364 |
| BsmFI | GGGAC | 1 cut(s) | 481 |
| BsnI | GGCC | 3 cut(s) | 745, 1061, 1122 |
| Bso31I | GGTCTC | 1 cut(s) | 705 |
| BsoBI | CYCGRG | 1 cut(s) | 918 |
| Bsp1286I | GDGCHC | 2 cut(s) | 256, 285 |
| Bsp143I | GATC | 6 cut(s) | 433, 454, 526, 592, 658, 1276 |
| Bsp19I | CCATGG | 4 cut(s) | 126, 159, 1056, 1131 |
| BspACI | CCGC | 4 cut(s) | 708, 1074, 1079, 1128 |
| BspANI | GGCC | 3 cut(s) | 745, 1061, 1122 |
| BspCNI | CTCAG | 2 cut(s) | 34, 727 |
| BspHI | TCATGA | 1 cut(s) | 106 |
| BspLI | GGNNCC | 2 cut(s) | 435, 1137 |
| BspMAI | CTGCAG | 3 cut(s) | 641, 1321, 1450 |
| BspPI | GGATC | 2 cut(s) | 428, 441 |
| BspT107I | GGYRCC | 1 cut(s) | 1135 |
| BspTNI | GGTCTC | 1 cut(s) | 705 |
| BsrDI | GCAATG | 2 cut(s) | 30, 1409 |
| BsrI | ACTGG | 5 cut(s) | 71, 370, 630, 956, 1741 |
| BssECI | CCNNGG | 9 cut(s) | 58, 126, 159, 505, 717, 1056, 1131, 1162, 1427 |
| BssMI | GATC | 6 cut(s) | 433, 454, 526, 592, 658, 1276 |
| BssSI | CACGAG | 1 cut(s) | 450 |
| BssT1I | CCWWGG | 9 cut(s) | 58, 126, 159, 505, 717, 1056, 1131, 1162, 1427 |
| Bst2BI | CACGAG | 1 cut(s) | 450 |
| Bst4CI | ACNGT | 2 cut(s) | 940, 1235 |
| Bst6I | CTCTTC | 6 cut(s) | 108, 315, 381, 1336, 1390, 1593 |
| BstC8I | GCNNGC | 3 cut(s) | 195, 651, 1422 |
| BstDEI | CTNAG | 5 cut(s) | 42, 87, 420, 500, 735 |
| BstDSI | CCRYGG | 4 cut(s) | 126, 159, 1056, 1131 |
| BstF5I | GGATG | 6 cut(s) | 155, 547, 787, 872, 947, 1030 |
| BstHHI | GCGC | 1 cut(s) | 1877 |
| BstKTI | GATC | 6 cut(s) | 436, 457, 529, 595, 661, 1279 |
| BstMAI | GTCTC | 6 cut(s) | 378, 705, 946, 1101, 1364, 1619 |
| BstMBI | GATC | 6 cut(s) | 433, 454, 526, 592, 658, 1276 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 620, 1685, 1881 |
| BstNSI | RCATGY | 1 cut(s) | 994 |
| BstSFI | CTRYAG | 4 cut(s) | 637, 1317, 1446, 1785 |
| BstV1I | GCAGC | 9 cut(s) | 623, 640, 692, 920, 1063, 1331, 1460, 1675, 1697 |
| BstV2I | GAAGAC | 6 cut(s) | 84, 141, 222, 389, 770, 1318 |
| BstX2I | RGATCY | 1 cut(s) | 433 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 133, 1057 |
| BstYI | RGATCY | 1 cut(s) | 433 |
| BsuRI | GGCC | 3 cut(s) | 745, 1061, 1122 |
| BtgI | CCRYGG | 4 cut(s) | 126, 159, 1056, 1131 |
| BtgZI | GCGATG | 1 cut(s) | 858 |
| BtrI | CACGTC | 1 cut(s) | 1358 |
| BtsCI | GGATG | 6 cut(s) | 155, 547, 787, 872, 947, 1030 |
| BtsI | GCAGTG | 2 cut(s) | 1281, 1443 |
| BtsIMutI | CAGTG | 7 cut(s) | 78, 522, 623, 936, 963, 1281, 1443 |
| Cac8I | GCNNGC | 3 cut(s) | 195, 651, 1422 |
| CaiI | CAGNNNCTG | 1 cut(s) | 656 |
| CciI | TCATGA | 1 cut(s) | 106 |
| CfoI | GCGC | 1 cut(s) | 1877 |
| Csp6I | GTAC | 7 cut(s) | 120, 925, 1179, 1185, 1478, 1546, 1710 |
| CviQI | GTAC | 7 cut(s) | 120, 925, 1179, 1185, 1478, 1546, 1710 |
| DdeI | CTNAG | 5 cut(s) | 42, 87, 420, 500, 735 |
| DpnI | GATC | 6 cut(s) | 435, 456, 528, 594, 660, 1278 |
| DpnII | GATC | 6 cut(s) | 433, 454, 526, 592, 658, 1276 |
| EaeI | YGGCCR | 1 cut(s) | 743 |
| Eam1104I | CTCTTC | 6 cut(s) | 108, 315, 381, 1336, 1390, 1593 |
| EarI | CTCTTC | 6 cut(s) | 108, 315, 381, 1336, 1390, 1593 |
| Ecl136II | GAGCTC | 1 cut(s) | 283 |
| Eco130I | CCWWGG | 9 cut(s) | 58, 126, 159, 505, 717, 1056, 1131, 1162, 1427 |
| Eco24I | GRGCYC | 2 cut(s) | 256, 285 |
| Eco31I | GGTCTC | 1 cut(s) | 705 |
| Eco32I | GATATC | 2 cut(s) | 166, 1346 |
| Eco53kI | GAGCTC | 1 cut(s) | 283 |
| Eco57I | CTGAAG | 4 cut(s) | 362, 690, 1076, 1159 |
| Eco88I | CYCGRG | 1 cut(s) | 918 |
| EcoICRI | GAGCTC | 1 cut(s) | 283 |
| EcoRI | GAATTC | 1 cut(s) | 685 |
| EcoRV | GATATC | 2 cut(s) | 166, 1346 |
| EcoT14I | CCWWGG | 9 cut(s) | 58, 126, 159, 505, 717, 1056, 1131, 1162, 1427 |
| EcoT22I | ATGCAT | 2 cut(s) | 387, 861 |
| EcoT38I | GRGCYC | 2 cut(s) | 256, 285 |
| ErhI | CCWWGG | 9 cut(s) | 58, 126, 159, 505, 717, 1056, 1131, 1162, 1427 |
| Esp3I | CGTCTC | 1 cut(s) | 1364 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 133, 165, 1765, 1797 |
| FaqI | GGGAC | 1 cut(s) | 481 |
| FbaI | TGATCA | 3 cut(s) | 454, 526, 658 |
| FokI | GGATG | 6 cut(s) | 142, 554, 794, 879, 934, 1017 |
| FriOI | GRGCYC | 2 cut(s) | 256, 285 |
| FspAI | RTGCGCAY | 1 cut(s) | 1876 |
| FspBI | CTAG | 5 cut(s) | 438, 561, 750, 819, 837 |
| FspI | TGCGCA | 1 cut(s) | 1876 |
| GlaI | GCGC | 1 cut(s) | 1876 |
| HaeIII | GGCC | 3 cut(s) | 745, 1061, 1122 |
| HhaI | GCGC | 1 cut(s) | 1877 |
| Hin6I | GCGC | 1 cut(s) | 1875 |
| HinP1I | GCGC | 1 cut(s) | 1875 |
| HincII | GTYRAC | 2 cut(s) | 1497, 1620 |
| HindII | GTYRAC | 2 cut(s) | 1497, 1620 |
| HinfI | GANTC | 3 cut(s) | 603, 642, 1823 |
| HphI | GGTGA | 2 cut(s) | 599, 936 |
| Hpy166II | GTNNAC | 2 cut(s) | 1497, 1620 |
| Hpy188I | TCNGA | 6 cut(s) | 97, 381, 697, 833, 1569, 1745 |
| Hpy188III | TCNNGA | 8 cut(s) | 107, 358, 452, 596, 1203, 1274, 1529, 1902 |
| Hpy8I | GTNNAC | 2 cut(s) | 1497, 1620 |
| HpyAV | CCTTC | 3 cut(s) | 266, 593, 1010 |
| HpyCH4III | ACNGT | 2 cut(s) | 940, 1235 |
| HpyCH4IV | ACGT | 1 cut(s) | 1357 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 620, 1685, 1881 |
| HpyF3I | CTNAG | 5 cut(s) | 42, 87, 420, 500, 735 |
| HpySE526I | ACGT | 1 cut(s) | 1357 |
| HspAI | GCGC | 1 cut(s) | 1875 |
| Ksp22I | TGATCA | 3 cut(s) | 454, 526, 658 |
| Kzo9I | GATC | 6 cut(s) | 433, 454, 526, 592, 658, 1276 |
| LmnI | GCTCC | 4 cut(s) | 288, 611, 853, 1291 |
| Lsp1109I | GCAGC | 9 cut(s) | 623, 640, 692, 920, 1063, 1331, 1460, 1675, 1697 |
| LweI | GCATC | 9 cut(s) | 213, 372, 830, 835, 846, 857, 1777, 1805, 1886 |
| MaeI | CTAG | 5 cut(s) | 438, 561, 750, 819, 837 |
| MaeII | ACGT | 1 cut(s) | 1357 |
| MaeIII | GTNAC | 2 cut(s) | 342, 587 |
| MalI | GATC | 6 cut(s) | 435, 456, 528, 594, 660, 1278 |
| MboI | GATC | 6 cut(s) | 433, 454, 526, 592, 658, 1276 |
| MflI | RGATCY | 1 cut(s) | 433 |
| MhlI | GDGCHC | 2 cut(s) | 256, 285 |
| MlsI | TGGCCA | 1 cut(s) | 745 |
| MluNI | TGGCCA | 1 cut(s) | 745 |
| MlyI | GAGTC | 1 cut(s) | 597 |
| MmeI | TCCRAC | 2 cut(s) | 875, 1359 |
| Mox20I | TGGCCA | 1 cut(s) | 745 |
| Mph1103I | ATGCAT | 2 cut(s) | 387, 861 |
| MscI | TGGCCA | 1 cut(s) | 745 |
| MseI | TTAA | 4 cut(s) | 315, 335, 1001, 1482 |
| MslI | CAYNNNNRTG | 4 cut(s) | 131, 221, 1055, 1130 |
| Msp20I | TGGCCA | 1 cut(s) | 745 |
| MspA1I | CMGCKG | 5 cut(s) | 653, 1076, 1322, 1451, 1688 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 620, 1685, 1881 |
| NcoI | CCATGG | 4 cut(s) | 126, 159, 1056, 1131 |
| NdeII | GATC | 6 cut(s) | 433, 454, 526, 592, 658, 1276 |
| NlaIV | GGNNCC | 2 cut(s) | 435, 1137 |
| NmuCI | GTSAC | 1 cut(s) | 587 |
| NsbI | TGCGCA | 1 cut(s) | 1876 |
| NsiI | ATGCAT | 2 cut(s) | 387, 861 |
| NspI | RCATGY | 1 cut(s) | 994 |
| PaeR7I | CTCGAG | 1 cut(s) | 918 |
| PagI | TCATGA | 1 cut(s) | 106 |
| PciI | ACATGT | 1 cut(s) | 990 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 471 |
| PfeI | GAWTC | 2 cut(s) | 642, 1823 |
| PleI | GAGTC | 1 cut(s) | 597 |
| PpsI | GAGTC | 1 cut(s) | 597 |
| PscI | ACATGT | 1 cut(s) | 990 |
| PshBI | ATTAAT | 1 cut(s) | 1001 |
| Psp124BI | GAGCTC | 1 cut(s) | 285 |
| PspN4I | GGNNCC | 2 cut(s) | 435, 1137 |
| PspXI | VCTCGAGB | 1 cut(s) | 918 |
| PstI | CTGCAG | 3 cut(s) | 641, 1321, 1450 |
| PstNI | CAGNNNCTG | 1 cut(s) | 656 |
| PsuI | RGATCY | 1 cut(s) | 433 |
| PvuII | CAGCTG | 4 cut(s) | 653, 1322, 1451, 1688 |
| RsaI | GTAC | 7 cut(s) | 121, 926, 1180, 1186, 1479, 1547, 1711 |
| RsaNI | GTAC | 7 cut(s) | 120, 925, 1179, 1185, 1478, 1546, 1710 |
| RseI | CAYNNNNRTG | 4 cut(s) | 131, 221, 1055, 1130 |
| SacI | GAGCTC | 1 cut(s) | 285 |
| SaqAI | TTAA | 4 cut(s) | 315, 335, 1001, 1482 |
| Sau3AI | GATC | 6 cut(s) | 433, 454, 526, 592, 658, 1276 |
| ScaI | AGTACT | 2 cut(s) | 1186, 1479 |
| SchI | GAGTC | 1 cut(s) | 597 |
| SduI | GDGCHC | 2 cut(s) | 256, 285 |
| SfaNI | GCATC | 9 cut(s) | 213, 372, 830, 835, 846, 857, 1777, 1805, 1886 |
| SfcI | CTRYAG | 4 cut(s) | 637, 1317, 1446, 1785 |
| Sfr274I | CTCGAG | 1 cut(s) | 918 |
| SlaI | CTCGAG | 1 cut(s) | 918 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 131, 221, 1055, 1130 |
| SmlI | CTYRAG | 3 cut(s) | 260, 517, 918 |
| SmoI | CTYRAG | 3 cut(s) | 260, 517, 918 |
| SsiI | CCGC | 4 cut(s) | 708, 1074, 1079, 1128 |
| SspI | AATATT | 1 cut(s) | 1524 |
| SspMI | CTAG | 5 cut(s) | 438, 561, 750, 819, 837 |
| SstI | GAGCTC | 1 cut(s) | 285 |
| StyI | CCWWGG | 9 cut(s) | 58, 126, 159, 505, 717, 1056, 1131, 1162, 1427 |
| TaaI | ACNGT | 2 cut(s) | 940, 1235 |
| TaiI | ACGT | 1 cut(s) | 1360 |
| TaqI | TCGA | 3 cut(s) | 461, 645, 919 |
| TatI | WGTACW | 3 cut(s) | 1178, 1184, 1477 |
| TauI | GCSGC | 1 cut(s) | 1082 |
| TfiI | GAWTC | 2 cut(s) | 642, 1823 |
| Tru1I | TTAA | 4 cut(s) | 315, 335, 1001, 1482 |
| Tru9I | TTAA | 4 cut(s) | 315, 335, 1001, 1482 |
| TscAI | CASTG | 7 cut(s) | 78, 529, 630, 943, 963, 1288, 1450 |
| TseFI | GTSAC | 1 cut(s) | 587 |
| TseI | GCWGC | 9 cut(s) | 636, 653, 705, 933, 1076, 1319, 1448, 1685, 1688 |
| Tsp45I | GTSAC | 1 cut(s) | 587 |
| TspDTI | ATGAA | 6 cut(s) | 126, 342, 426, 558, 566, 695 |
| TspGWI | ACGGA | 1 cut(s) | 624 |
| TspRI | CASTG | 7 cut(s) | 78, 529, 630, 943, 963, 1288, 1450 |
| VspI | ATTAAT | 1 cut(s) | 1001 |
| XapI | RAATTY | 5 cut(s) | 49, 685, 1198, 1252, 1667 |
| XceI | RCATGY | 1 cut(s) | 994 |
| XhoI | CTCGAG | 1 cut(s) | 918 |
| XspI | CTAG | 5 cut(s) | 438, 561, 750, 819, 837 |
| ZrmI | AGTACT | 2 cut(s) | 1186, 1479 |
| Zsp2I | ATGCAT | 2 cut(s) | 387, 861 |