Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8279817.1

Orthogroup ID

OG0008989

Physical Location & Seq

Genomic Coordinates Forward (+)

71 .. 846

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8279817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgcagttgaatgatggatgtcaatggagaaaatatggacagaaaatagcaaaaggaaatccatgccctcgagcatactaccgttgcacagtttcaccgtcgtgccctgtgagaaaacaagtgcaaagatgtgcggaagacatgtcgatattgatcacaacctatgagggtaaccacaaccatccacttcccatgtcagccacggccatggcctccaccacctccgccgccgcatccatgcttcagtctcactcatccacctcgcaacaaggccttgtcaactcaaccaccgcccccatctccacctccactagtaacctccatggccatggaccaaacttcactaatagtctctcccagaattcatcgagactactaccacagtcacagttctatttccccaacagttcaatctcaactaacaattcccacccaaccatcacccttgatctcactgctccatctccctcccatttcggactaagatttccttcagggttgccgagatattcctcgagtacaagcctcaacttttcgtcatcgtcttcctcttctttcgaccacaacacattactacaaacaccaaattggattaacaatcccgctgctgcaggctatttcaactatgggacggtcctatctcatcagaataggatgaaccaagctgttggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

224

Amino Acids

24.25

Weight (kDa)

9.4

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69810 AT1G69810
fragaria_vesca	FvH4_4g31790 FvH4_4g31790 FvH4_4g31790
malus_domestica	MD13G1077900.v1.1 MD16G1077700.v1.1
prunus_persica	Prupe.1G269200_v2.0.a1 Prupe.1G269200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440391
rosa_laevigata	RLG00000006186
rosa_multiflora	Rmu_co8279817.1_g000001 Rmu_co8317961.1_g000001 Rmu_sc0000938.1_g000002 Rmu_sc0001685.1_g000047
rosa_roxburghii	Rroxscaffold_5G00381260
rosa_rugosa	Rorug04G0325900
rosa_samantha	Rh4AG377100 Rh4BG390100 Rh4CG404900 Rh4DG383800
rosa_wichuraiana	Rw4G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	134, 225, 228, 231, 291, 603
AcoI	YGGCCR	2 cut(s)	204, 325
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	227, 477
AfaI	GTAC	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	10, 411, 622
AhlI	ACTAGT	1 cut(s)	311
AleI	CACNNNNGTG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	665
AluI	AGCT	1 cut(s)	665
Alw26I	GTCTC	3 cut(s)	252, 356, 364
Ama87I	CYCGRG	2 cut(s)	69, 514
AoxI	GGCC	4 cut(s)	204, 210, 271, 325
ApeKI	GCWGC	2 cut(s)	605, 608
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	332, 634
AsuHPI	GGTGA	2 cut(s)	87, 433
AvaI	CYCGRG	2 cut(s)	69, 514
AvaII	GGWCC	2 cut(s)	332, 634
BaeGI	GKGCMC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	327
BbsI	GAAGAC	2 cut(s)	144, 537
BbvI	GCAGC	2 cut(s)	592, 595
BccI	CCATC	5 cut(s)	8, 189, 305, 446, 469
BceAI	ACGGC	1 cut(s)	219
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	3 cut(s)	252, 356, 364
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	4 cut(s)	228, 231, 606, 609
BlsI	GCNGC	4 cut(s)	229, 232, 607, 610
Bme18I	GGWCC	2 cut(s)	332, 634
BmeT110I	CYCGRG	2 cut(s)	69, 514
BmgT120I	GGNCC	2 cut(s)	332, 634
BmsI	GCATC	1 cut(s)	242
BpiI	GAAGAC	2 cut(s)	144, 537
BsaBI	GATNNNNATC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	201, 207, 322, 328
Bse8I	GATNNNNATC	1 cut(s)	152
BseDI	CCNNGG	4 cut(s)	201, 207, 322, 328
BseGI	GGATG	5 cut(s)	23, 181, 233, 254, 660
BseJI	GATNNNNATC	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	592, 595
BshFI	GGCC	4 cut(s)	206, 212, 273, 327
BsiHKCI	CYCGRG	2 cut(s)	69, 514
BslFI	GGGAC	1 cut(s)	643
BsmAI	GTCTC	3 cut(s)	252, 356, 364
BsmFI	GGGAC	1 cut(s)	643
BsnI	GGCC	4 cut(s)	206, 212, 273, 327
BsoBI	CYCGRG	2 cut(s)	69, 514
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	153, 448
Bsp19I	CCATGG	3 cut(s)	207, 322, 328
BspACI	CCGC	6 cut(s)	134, 225, 228, 231, 291, 603
BspANI	GGCC	4 cut(s)	206, 212, 273, 327
BspMAI	CTGCAG	1 cut(s)	613
BssECI	CCNNGG	4 cut(s)	201, 207, 322, 328
BssMI	GATC	2 cut(s)	153, 448
BssT1I	CCWWGG	3 cut(s)	207, 322, 328
Bst4CI	ACNGT	7 cut(s)	83, 91, 99, 384, 390, 407, 634
Bst6I	CTCTTC	1 cut(s)	556
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	1 cut(s)	482
BstDSI	CCRYGG	4 cut(s)	201, 207, 322, 328
BstEII	GGTNACC	1 cut(s)	170
BstF5I	GGATG	5 cut(s)	23, 181, 233, 254, 660
BstKTI	GATC	2 cut(s)	156, 451
BstMAI	GTCTC	3 cut(s)	252, 356, 364
BstMBI	GATC	2 cut(s)	153, 448
BstNSI	RCATGY	1 cut(s)	145
BstPI	GGTNACC	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	592, 595
BstV2I	GAAGAC	2 cut(s)	144, 537
BstXI	CCANNNNNNTGG	3 cut(s)	208, 329, 668
BsuRI	GGCC	4 cut(s)	206, 212, 273, 327
BtgI	CCRYGG	4 cut(s)	201, 207, 322, 328
BtsCI	GGATG	5 cut(s)	23, 181, 233, 254, 660
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	613
Cfr13I	GGNCC	2 cut(s)	332, 634
Csp6I	GTAC	1 cut(s)	519
CviAII	CATG	7 cut(s)	63, 142, 193, 208, 238, 323, 329
CviJI	RGCY	8 cut(s)	200, 206, 212, 273, 327, 525, 615, 665
CviKI_1	RGCY	8 cut(s)	200, 206, 212, 273, 327, 525, 615, 665
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	2 cut(s)	155, 450
DpnII	GATC	2 cut(s)	153, 448
EaeI	YGGCCR	2 cut(s)	204, 325
Eam1104I	CTCTTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	556
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	3 cut(s)	207, 322, 328
Eco147I	AGGCCT	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	332, 634
Eco57I	CTGAAG	2 cut(s)	227, 477
Eco88I	CYCGRG	2 cut(s)	69, 514
Eco91I	GGTNACC	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	3 cut(s)	207, 322, 328
ErhI	CCWWGG	3 cut(s)	207, 322, 328
FaeI	CATG	7 cut(s)	66, 145, 196, 211, 241, 326, 332
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	7 cut(s)	62, 141, 192, 207, 237, 322, 328
FauI	CCCGC	1 cut(s)	610
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	228, 231, 606, 609
FokI	GGATG	5 cut(s)	30, 168, 220, 241, 667
Fsp4HI	GCNGC	4 cut(s)	228, 231, 606, 609
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	4 cut(s)	228, 231, 606, 609
HaeIII	GGCC	4 cut(s)	206, 212, 273, 327
Hin1II	CATG	7 cut(s)	66, 145, 196, 211, 241, 326, 332
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HphI	GGTGA	2 cut(s)	87, 433
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	479, 648
Hpy188III	TCNNGA	1 cut(s)	369
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	7 cut(s)	83, 91, 99, 384, 390, 407, 634
HpyCH4V	TGCA	4 cut(s)	4, 87, 124, 611
HpyF3I	CTNAG	1 cut(s)	482
Hsp92II	CATG	7 cut(s)	66, 145, 196, 211, 241, 326, 332
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	153, 448
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	4 cut(s)	120, 371, 480, 597
Lsp1109I	GCAGC	2 cut(s)	592, 595
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	170, 314, 384
MalI	GATC	2 cut(s)	155, 450
MboI	GATC	2 cut(s)	153, 448
MboII	GAAGA	3 cut(s)	149, 537, 543
MhlI	GDGCHC	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	327
MluCI	AATT	3 cut(s)	361, 424, 586
MluNI	TGGCCA	1 cut(s)	327
Mox20I	TGGCCA	1 cut(s)	327
MscI	TGGCCA	1 cut(s)	327
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	3 cut(s)	100, 206, 327
Msp20I	TGGCCA	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	605
NcoI	CCATGG	3 cut(s)	207, 322, 328
NdeII	GATC	2 cut(s)	153, 448
NlaIII	CATG	7 cut(s)	66, 145, 196, 211, 241, 326, 332
NmeAIII	GCCGAG	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	384
NspI	RCATGY	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	100
PaeR7I	CTCGAG	2 cut(s)	69, 514
PceI	AGGCCT	1 cut(s)	273
PciI	ACATGT	1 cut(s)	141
PkrI	GCNGC	4 cut(s)	229, 232, 607, 610
PscI	ACATGT	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	332, 634
PspXI	VCTCGAGB	2 cut(s)	69, 514
PstI	CTGCAG	1 cut(s)	613
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
RseI	CAYNNNNRTG	3 cut(s)	100, 206, 327
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	4 cut(s)	228, 231, 606, 609
Sau3AI	GATC	2 cut(s)	153, 448
Sau96I	GGNCC	2 cut(s)	332, 634
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	6 cut(s)	164, 224, 263, 308, 321, 667
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	1 cut(s)	609
Sfr274I	CTCGAG	2 cut(s)	69, 514
SinI	GGWCC	2 cut(s)	332, 634
SlaI	CTCGAG	2 cut(s)	69, 514
SmiMI	CAYNNNNRTG	3 cut(s)	100, 206, 327
SmlI	CTYRAG	2 cut(s)	69, 514
SmoI	CTYRAG	2 cut(s)	69, 514
SpeI	ACTAGT	1 cut(s)	311
Sse9I	AATT	3 cut(s)	361, 424, 586
SseBI	AGGCCT	1 cut(s)	273
SsiI	CCGC	6 cut(s)	134, 225, 228, 231, 291, 603
SspMI	CTAG	1 cut(s)	312
StuI	AGGCCT	1 cut(s)	273
StyI	CCWWGG	3 cut(s)	207, 322, 328
TaaI	ACNGT	7 cut(s)	83, 91, 99, 384, 390, 407, 634
TaqI	TCGA	5 cut(s)	70, 146, 368, 515, 558
TasI	AATT	3 cut(s)	361, 424, 586
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	2 cut(s)	230, 233
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	2 cut(s)	605, 608
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	2 cut(s)	354, 671
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	2 cut(s)	332, 634
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	145
XhoI	CTCGAG	2 cut(s)	69, 514
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.