Rmu_sc0000938.1_g000002
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000938.1
OG0008989
Physical Location & Seq
Reverse (-)
3946 .. 4362
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000938.1_g000002.1.cds

Sequence Viewer

Length: 417 bp
atgaaccaagctgttggttggtcttctcttaacaacggaaagcagccatttcaagaacctaatttctaccaatcttacattcaaaattctcagaaagcagctcctgctccacctcagcatcatctgtttacagagacattagccactgcaacaaaagcaatcacatcaaaccctaagtttcaatcagctttagcagcggcactcacgtcatttgttggtgctaatgggggtactagcggggcggtcagagaaactagtcacatcgttaatggcagtagtagtactgaaagttctgggctgaaattgaagtggggtgagtccttgacgccgattaatccagtctacccatcaacccagaagggaatcgggtgcgcatcatcaggctacttgaacaaatcatcgtcgccattgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRKY

Protein Analysis

138

Amino Acids

14.44

Weight (kDa)

9.37

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 373
AccI GTMKAC 1 cut(s) 342
AciI CCGC 3 cut(s) 197, 237, 242
AcsI RAATTY 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 326
AfaI GTAC 2 cut(s) 232, 283
AgsI TTSAA 6 cut(s) 53, 83, 182, 307, 391, 412
AhlI ACTAGT 1 cut(s) 254
AjiI CACGTC 1 cut(s) 207
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 3 cut(s) 11, 101, 188
AluI AGCT 3 cut(s) 11, 101, 188
Alw26I GTCTC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 104
ApeKI GCWGC 3 cut(s) 43, 98, 194
ApoI RAATTY 1 cut(s) 85
AseI ATTAAT 1 cut(s) 333
AspLEI GCGC 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 15
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 55, 110, 206
BccI CCATC 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 254
BfaI CTAG 2 cut(s) 234, 255
BisI GCNGC 4 cut(s) 44, 99, 195, 198
BlsI GCNGC 4 cut(s) 45, 100, 196, 199
BmcAI AGTACT 1 cut(s) 283
BmgBI CACGTC 1 cut(s) 207
BmsI GCATC 2 cut(s) 127, 383
BpiI GAAGAC 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 338
BseMII CTCAG 2 cut(s) 104, 128
BseNI ACTGG 1 cut(s) 338
BseXI GCAGC 3 cut(s) 55, 110, 206
BsmAI GTCTC 1 cut(s) 128
BspACI CCGC 3 cut(s) 197, 237, 242
BspCNI CTCAG 2 cut(s) 103, 127
BsrI ACTGG 1 cut(s) 338
BssNI GRCGYC 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 326
BstAPI GCANNNNNTGC 1 cut(s) 104
BstDEI CTNAG 3 cut(s) 90, 114, 174
BstHHI GCGC 1 cut(s) 374
BstMAI GTCTC 1 cut(s) 128
BstMWI GCNNNNNNNGC 3 cut(s) 104, 155, 194
BstV1I GCAGC 3 cut(s) 55, 110, 206
BstV2I GAAGAC 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 14
BtrI CACGTC 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 1 cut(s) 374
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 231, 282
CviJI RGCY 7 cut(s) 11, 46, 101, 143, 188, 298, 384
CviKI_1 RGCY 7 cut(s) 11, 46, 101, 143, 188, 298, 384
CviQI GTAC 2 cut(s) 231, 282
DdeI CTNAG 3 cut(s) 90, 114, 174
FauI CCCGC 1 cut(s) 230
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 44, 99, 195, 198
Fsp4HI GCNGC 4 cut(s) 44, 99, 195, 198
FspAI RTGCGCAY 1 cut(s) 373
FspBI CTAG 2 cut(s) 234, 255
FspI TGCGCA 1 cut(s) 373
GlaI GCGC 1 cut(s) 373
GluI GCNGC 4 cut(s) 44, 99, 195, 198
HgaI GACGC 1 cut(s) 334
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 326
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 2 cut(s) 317, 363
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 129, 343
Hpy188I TCNGA 2 cut(s) 93, 248
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 2 cut(s) 129, 343
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 155, 194
HpyF3I CTNAG 3 cut(s) 90, 114, 174
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 1 cut(s) 326
HspAI GCGC 1 cut(s) 372
LmnI GCTCC 2 cut(s) 106, 112
LpnPI CCDG 5 cut(s) 117, 279, 351, 366, 368
Lsp1109I GCAGC 3 cut(s) 55, 110, 206
LweI GCATC 2 cut(s) 127, 383
MaeI CTAG 2 cut(s) 234, 255
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 257
MboII GAAGA 1 cut(s) 15
MluCI AATT 4 cut(s) 61, 85, 302, 412
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 1 cut(s) 123
MseI TTAA 3 cut(s) 30, 267, 333
MspA1I CMGCKG 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 104, 155, 194
NmuCI GTSAC 1 cut(s) 257
NsbI TGCGCA 1 cut(s) 373
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 4 cut(s) 45, 100, 196, 199
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PshBI ATTAAT 1 cut(s) 333
PsrI GAACNNNNNNTAC 2 cut(s) 274, 306
PstNI CAGNNNCTG 1 cut(s) 104
RsaI GTAC 2 cut(s) 232, 283
RsaNI GTAC 2 cut(s) 231, 282
SaqAI TTAA 3 cut(s) 30, 267, 333
SatI GCNGC 4 cut(s) 44, 99, 195, 198
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 1 cut(s) 326
SetI ASST 6 cut(s) 13, 61, 103, 115, 190, 209
SfaNI GCATC 2 cut(s) 127, 383
SpeI ACTAGT 1 cut(s) 254
Sse9I AATT 4 cut(s) 61, 85, 302, 412
SsiI CCGC 3 cut(s) 197, 237, 242
SspMI CTAG 2 cut(s) 234, 255
TaiI ACGT 1 cut(s) 209
TasI AATT 4 cut(s) 61, 85, 302, 412
TatI WGTACW 1 cut(s) 281
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 3 cut(s) 30, 267, 333
Tru9I TTAA 3 cut(s) 30, 267, 333
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 3 cut(s) 43, 98, 194
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 151
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 2 cut(s) 234, 255
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.