Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001685.1

Orthogroup ID

OG0008989

Physical Location & Seq

Genomic Coordinates Reverse (-)

253589 .. 255560

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001685.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atggaaaagtctttgctgggaaattcagttatggaagagaacagaatgaaatctgatggtgatgattcagaaggcacttccaaagatataaacaagggaggagatgttgaagaagtagctgaaggaagtattaatttgaagctgcagccttcacctacacaaaaggatagagctcagagcaagcacaaacaggaagcagatgatgaactggaattagctaaagctgaaatgggggaggttagagaagaaaataaaaggctaaaggtgttattatcgcaaatcgggaaggattaccaggaacttcagatgcattttcttgatgttattcaaaaagaagaaacaaataagaaatctatggataccagtagtacagctgatcatcaaggaactgtttcggctgaagctgatgaacttgtgtcccttagccttgggagaacctcgagtagtactagtactcatgatcatcagctcagaaaggaccatcatgagatgatgaaaaagaccagcagagatgacgattacggggtaatgaatgaagctggacttgcattggaattgggatgtagatcatttgagccagctgcagctgatcatgaaactatgaaggttaattcaagctccgaaataaatagttcagccgcagatccaaaggaagacgaagtaactaagatatggccgcctggtaaaatgttgaagacaagagatgatgatgtttcacaacagcagacccatttgaagaaagctagggtttctgtcagagctagatgcgatgctccaacatggggtgagtccttgacgccgattaatccagtctacccatcaacccagaagggaatcgggtgcgcatcatcaggctacttgaacaaatcatcgtcgccattaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

295

Amino Acids

32.52

Weight (kDa)

5.17

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69810 AT1G69810
fragaria_vesca	FvH4_4g31790 FvH4_4g31790 FvH4_4g31790
malus_domestica	MD13G1077900.v1.1 MD16G1077700.v1.1
prunus_persica	Prupe.1G269200_v2.0.a1 Prupe.1G269200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440391
rosa_laevigata	RLG00000006186
rosa_multiflora	Rmu_co8279817.1_g000001 Rmu_co8317961.1_g000001 Rmu_sc0000938.1_g000002 Rmu_sc0001685.1_g000047
rosa_roxburghii	Rroxscaffold_5G00381260
rosa_rugosa	Rorug04G0325900
rosa_samantha	Rh4AG377100 Rh4BG390100 Rh4CG404900 Rh4DG383800
rosa_wichuraiana	Rw4G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	844
AccI	GTMKAC	1 cut(s)	813
AciI	CCGC	2 cut(s)	639, 677
AclWI	GGATC	1 cut(s)	638
AcoI	YGGCCR	1 cut(s)	674
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	3 cut(s)	141, 287, 420
AcyI	GRCGYC	1 cut(s)	797
AfaI	GTAC	3 cut(s)	370, 448, 454
AfiI	CCNNNNNNNGG	1 cut(s)	782
AgsI	TTSAA	7 cut(s)	110, 139, 329, 615, 694, 736, 862
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	2 cut(s)	294, 679
Alw21I	GWGCWC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	439
AoxI	GGCC	1 cut(s)	674
ApeKI	GCWGC	4 cut(s)	142, 145, 581, 584
ApoI	RAATTY	1 cut(s)	22
AseI	ATTAAT	2 cut(s)	132, 804
Asp700I	GAANNNNTTC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	845
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	3 cut(s)	71, 144, 797
AvaI	CYCGRG	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	2 cut(s)	660, 701
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	4 cut(s)	129, 157, 568, 596
BccI	CCATC	3 cut(s)	50, 489, 826
BciT130I	CCWGG	2 cut(s)	296, 681
BciVI	GTATCC	1 cut(s)	352
BclI	TGATCA	3 cut(s)	376, 460, 589
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	3 cut(s)	450, 744, 762
BfmI	CTRYAG	2 cut(s)	143, 582
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	6 cut(s)	143, 146, 582, 585, 639, 677
BlsI	GCNGC	6 cut(s)	144, 147, 583, 586, 640, 678
BmcAI	AGTACT	2 cut(s)	448, 454
Bme1390I	CCNGG	2 cut(s)	296, 681
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	478
BmrFI	CCNGG	2 cut(s)	296, 681
BmsI	GCATC	4 cut(s)	297, 755, 760, 854
BpiI	GAAGAC	2 cut(s)	660, 701
Bpu10I	CCTNAGC	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	565
BsaHI	GRCGYC	1 cut(s)	797
BsaJI	CCNNGG	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse1I	ACTGG	3 cut(s)	213, 363, 809
Bse8I	GATNNNNATC	1 cut(s)	565
BseBI	CCWGG	2 cut(s)	296, 681
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	1 cut(s)	566
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseMII	CTCAG	2 cut(s)	188, 484
BseNI	ACTGG	3 cut(s)	213, 363, 809
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	4 cut(s)	129, 157, 568, 596
BseYI	CCCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	676
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	439
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	676
BsoBI	CYCGRG	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	376, 460, 566, 589, 643
BspACI	CCGC	2 cut(s)	639, 677
BspANI	GGCC	1 cut(s)	676
BspCNI	CTCAG	2 cut(s)	187, 483
BspHI	TCATGA	3 cut(s)	457, 484, 592
BspMAI	CTGCAG	2 cut(s)	147, 586
BspPI	GGATC	1 cut(s)	638
BsrI	ACTGG	3 cut(s)	213, 363, 809
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	5 cut(s)	376, 460, 566, 589, 643
BssNI	GRCGYC	1 cut(s)	797
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	296, 681
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	797
BstC8I	GCNNGC	2 cut(s)	182, 579
BstDEI	CTNAG	4 cut(s)	174, 422, 470, 666
BstF5I	GGATG	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	845
BstKTI	GATC	5 cut(s)	379, 463, 569, 592, 646
BstMBI	GATC	5 cut(s)	376, 460, 566, 589, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	2 cut(s)	296, 681
BstSCI	CCNGG	2 cut(s)	294, 679
BstSFI	CTRYAG	2 cut(s)	143, 582
BstV1I	GCAGC	4 cut(s)	129, 157, 568, 596
BstV2I	GAAGAC	2 cut(s)	660, 701
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	676
BtgZI	GCGATG	1 cut(s)	783
BtsCI	GGATG	1 cut(s)	566
Cac8I	GCNNGC	2 cut(s)	182, 579
CciI	TCATGA	3 cut(s)	457, 484, 592
CfoI	GCGC	1 cut(s)	845
Cfr13I	GGNCC	1 cut(s)	478
CseI	GACGC	1 cut(s)	805
Csp6I	GTAC	3 cut(s)	369, 447, 453
CviAII	CATG	4 cut(s)	458, 485, 593, 780
CviQI	GTAC	3 cut(s)	369, 447, 453
DdeI	CTNAG	4 cut(s)	174, 422, 470, 666
DpnI	GATC	5 cut(s)	378, 462, 568, 591, 645
DpnII	GATC	5 cut(s)	376, 460, 566, 589, 643
EaeI	YGGCCR	1 cut(s)	674
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	3 cut(s)	141, 287, 420
Eco88I	CYCGRG	1 cut(s)	439
EcoICRI	GAGCTC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	294, 679
EcoT14I	CCWWGG	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	4 cut(s)	461, 488, 596, 783
FaiI	YATR	9 cut(s)	32, 89, 356, 459, 486, 594, 602, 673, 781
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	4 cut(s)	457, 484, 592, 779
FbaI	TGATCA	3 cut(s)	376, 460, 589
FblI	GTMKAC	1 cut(s)	813
Fnu4HI	GCNGC	6 cut(s)	143, 146, 582, 585, 639, 677
FokI	GGATG	1 cut(s)	573
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	6 cut(s)	143, 146, 582, 585, 639, 677
FspAI	RTGCGCAY	1 cut(s)	844
FspBI	CTAG	3 cut(s)	450, 744, 762
FspI	TGCGCA	1 cut(s)	844
GlaI	GCGC	1 cut(s)	844
GluI	GCNGC	6 cut(s)	143, 146, 582, 585, 639, 677
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	676
HgaI	GACGC	1 cut(s)	805
HhaI	GCGC	1 cut(s)	845
Hin1I	GRCGYC	1 cut(s)	797
Hin1II	CATG	4 cut(s)	461, 488, 596, 783
Hin6I	GCGC	1 cut(s)	843
HinP1I	GCGC	1 cut(s)	843
HinfI	GANTC	3 cut(s)	65, 788, 834
HphI	GGTGA	3 cut(s)	71, 144, 797
Hpy166II	GTNNAC	1 cut(s)	814
Hpy188I	TCNGA	7 cut(s)	55, 70, 177, 306, 473, 622, 758
Hpy188III	TCNNGA	5 cut(s)	283, 317, 458, 485, 593
Hpy8I	GTNNAC	1 cut(s)	814
Hpy99I	CGWCG	1 cut(s)	877
HpyAV	CCTTC	6 cut(s)	65, 116, 159, 280, 598, 823
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	4 cut(s)	145, 310, 548, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	4 cut(s)	174, 422, 470, 666
Hsp92I	GRCGYC	1 cut(s)	797
Hsp92II	CATG	4 cut(s)	461, 488, 596, 783
HspAI	GCGC	1 cut(s)	843
Ksp22I	TGATCA	3 cut(s)	376, 460, 589
Kzo9I	GATC	5 cut(s)	376, 460, 566, 589, 643
LmnI	GCTCC	2 cut(s)	623, 778
Lsp1109I	GCAGC	4 cut(s)	129, 157, 568, 596
LweI	GCATC	4 cut(s)	297, 755, 760, 854
MaeI	CTAG	3 cut(s)	450, 744, 762
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	5 cut(s)	378, 462, 568, 591, 645
MboI	GATC	5 cut(s)	376, 460, 566, 589, 643
MboII	GAAGA	7 cut(s)	47, 122, 257, 347, 665, 706, 748
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	6 cut(s)	22, 133, 212, 554, 610, 883
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	1 cut(s)	800
MnlI	CCTC	3 cut(s)	92, 229, 448
Mph1103I	ATGCAT	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	4 cut(s)	132, 609, 804, 881
MspA1I	CMGCKG	3 cut(s)	374, 581, 587
MspR9I	CCNGG	2 cut(s)	296, 681
MvaI	CCWGG	2 cut(s)	296, 681
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeII	GATC	5 cut(s)	376, 460, 566, 589, 643
NlaIII	CATG	4 cut(s)	461, 488, 596, 783
NsbI	TGCGCA	1 cut(s)	844
NsiI	ATGCAT	1 cut(s)	312
PaeR7I	CTCGAG	1 cut(s)	439
PagI	TCATGA	3 cut(s)	457, 484, 592
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	65, 834
PkrI	GCNGC	6 cut(s)	144, 147, 583, 586, 640, 678
PleI	GAGTC	1 cut(s)	796
PpsI	GAGTC	1 cut(s)	796
PshBI	ATTAAT	2 cut(s)	132, 804
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	294, 679
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	294, 679
PspPI	GGNCC	1 cut(s)	478
PspXI	VCTCGAGB	1 cut(s)	439
PstI	CTGCAG	2 cut(s)	147, 586
PsuI	RGATCY	1 cut(s)	643
PvuII	CAGCTG	3 cut(s)	374, 581, 587
RsaI	GTAC	3 cut(s)	370, 448, 454
RsaNI	GTAC	3 cut(s)	369, 447, 453
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	4 cut(s)	132, 609, 804, 881
SatI	GCNGC	6 cut(s)	143, 146, 582, 585, 639, 677
Sau3AI	GATC	5 cut(s)	376, 460, 566, 589, 643
Sau96I	GGNCC	1 cut(s)	478
ScaI	AGTACT	2 cut(s)	448, 454
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	2 cut(s)	296, 681
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	4 cut(s)	297, 755, 760, 854
SfcI	CTRYAG	2 cut(s)	143, 582
Sfr274I	CTCGAG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	439
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	6 cut(s)	22, 133, 212, 554, 610, 883
SsiI	CCGC	2 cut(s)	639, 677
SspMI	CTAG	3 cut(s)	450, 744, 762
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	294, 679
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	440
TasI	AATT	6 cut(s)	22, 133, 212, 554, 610, 883
TatI	WGTACW	3 cut(s)	368, 446, 452
TauI	GCSGC	2 cut(s)	641, 679
TfiI	GAWTC	2 cut(s)	65, 834
Tru1I	TTAA	4 cut(s)	132, 609, 804, 881
Tru9I	TTAA	4 cut(s)	132, 609, 804, 881
TseI	GCWGC	4 cut(s)	142, 145, 581, 584
TspDTI	ATGAA	8 cut(s)	62, 219, 423, 509, 545, 549, 609, 617
VpaK11BI	GGWCC	1 cut(s)	478
VspI	ATTAAT	2 cut(s)	132, 804
XapI	RAATTY	1 cut(s)	22
XhoI	CTCGAG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	813
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	3 cut(s)	450, 744, 762
ZrmI	AGTACT	2 cut(s)	448, 454
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.