Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007471

Physical Location & Seq

Genomic Coordinates Forward (+)

30509273 .. 30511587

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G316300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCAGTCTCCATACCCATAGTGGCCATCGTCACCTCTCTGCACCTCATCGCCTTCGTTTTCGCCGTGGGTGCTGAACGACGCCGTAGCACGGCCAAGATAGTGCCTGATGAGTACGACGAGCACACCTACTGCGTTTACGGGACGGACGCTTCTACGGCGTACGGATTAGCGGCTTTTGGGCTGCTTTTCGTCAGCCAGACGGTGCTAAACGTCGTCACGAGGTGTCTCTGCTGCGGCAAAGGCTTAGTGACTGGCAGCTCCACCACTTGGACCGTCTTCTTCTTCGTCTTCTCCTGGACAAGCTTTTTGGGAGCCGAGGCATGCTTATTGGCAGGGTCAGCAAAGAATGCGTACCACACCAAGTACCGGGGAATCTTTAACGCAGATGACTTGTCCTGTTCCACTCTGCGTAAGGGCGTGTTTGCCGCCGCGGCTGCTCTTACACTGTTGTCATTGGCAGGGTCAAGTTTTTACTACTGGGCACATTCCAAAGCTGATACTGGGGGATGGGAGAAGCACAGAAATGAAGGCCTCGACATGAGCACTTCTAATTATGCAAATCATGAGCAGCAACAGCAAACCGGTGGATTTGAGAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

202

Amino Acids

21.76

Weight (kDa)

6.99

Isoelectric Point (pI)

24.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68220
fragaria_vesca	FvH4_4g26760 FvH4_4g26760
malus_domestica	MD01G1086300.v1.1 MD06G1233200.v1.1 MD11G1172000.v1.1 MD11G1172100.v1.1 MD13G1035500.v1.1 MD15G1416200.v1.1 MD16G1037500.v1.1 MD16G1286700.v1.1
prunus_persica	Prupe.1G316300_v2.0.a1 Prupe.1G316300_v2.0.a1
pyrus_communis	pycom16g03270
rosa_chinensis	RchiOBHm_Chr4g0434441
rosa_laevigata	RLG00000006671
rosa_multiflora	Rmu_sc0002251.1_g000005 Rmu_sc0005899.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375800
rosa_rugosa	Rorug04G0276700
rosa_samantha	Rh4AG332300 Rh4BG340100 Rh4CG355300 Rh4DG335500
rosa_wichuraiana	Rw4G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	270
AccII	CGCG	1 cut(s)	434
AciI	CCGC	5 cut(s)	173, 237, 429, 432, 434
AcoI	YGGCCR	2 cut(s)	24, 93
AcyI	GRCGYC	1 cut(s)	82
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	4 cut(s)	116, 164, 356, 368
AfiI	CCNNNNNNNGG	3 cut(s)	91, 270, 369
AgeI	ACCGGT	1 cut(s)	584
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	3 cut(s)	261, 306, 497
AluI	AGCT	3 cut(s)	261, 306, 497
Alw21I	GWGCWC	2 cut(s)	126, 548
Alw26I	GTCTC	2 cut(s)	13, 233
AoxI	GGCC	3 cut(s)	24, 93, 532
ApeKI	GCWGC	5 cut(s)	184, 234, 258, 437, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	292, 324
AsiGI	ACCGGT	1 cut(s)	584
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	26
BauI	CACGAG	1 cut(s)	220
BbsI	GAAGAC	2 cut(s)	271, 283
Bbv12I	GWGCWC	2 cut(s)	126, 548
BbvI	GCAGC	5 cut(s)	171, 221, 270, 424, 583
BccI	CCATC	2 cut(s)	35, 504
BceAI	ACGGC	4 cut(s)	50, 69, 108, 174
BciT130I	CCWGG	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	13, 233
BglI	GCCNNNNNGGC	1 cut(s)	434
Bme1390I	CCNGG	2 cut(s)	298, 371
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	298, 371
BmrI	ACTGGG	2 cut(s)	490, 513
BmuI	ACTGGG	2 cut(s)	490, 513
BpiI	GAAGAC	2 cut(s)	271, 283
BpuMI	CCSGG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	82
BsaJI	CCNNGG	4 cut(s)	66, 318, 370, 432
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 270, 369
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	3 cut(s)	259, 485, 508
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	4 cut(s)	66, 318, 370, 432
BseGI	GGATG	1 cut(s)	515
BseLI	CCNNNNNNNGG	3 cut(s)	91, 270, 369
BseNI	ACTGG	3 cut(s)	259, 485, 508
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	5 cut(s)	171, 221, 270, 424, 583
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	434
BshFI	GGCC	3 cut(s)	26, 95, 534
BshTI	ACCGGT	1 cut(s)	584
BsiHKAI	GWGCWC	2 cut(s)	126, 548
BsiSI	CCGG	2 cut(s)	370, 585
BsiWI	CGTACG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	3 cut(s)	91, 270, 369
BsmAI	GTCTC	2 cut(s)	13, 233
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	26, 95, 534
Bsp1286I	GDGCHC	3 cut(s)	126, 487, 548
BspACI	CCGC	5 cut(s)	173, 237, 429, 432, 434
BspANI	GGCC	3 cut(s)	26, 95, 534
BspFNI	CGCG	1 cut(s)	434
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	3 cut(s)	259, 485, 508
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	4 cut(s)	66, 318, 370, 432
BssNI	GRCGYC	1 cut(s)	82
BssSI	CACGAG	1 cut(s)	220
Bst2BI	CACGAG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	3 cut(s)	205, 277, 450
BstACI	GRCGYC	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	247
BstDSI	CCRYGG	2 cut(s)	66, 432
BstF5I	GGATG	1 cut(s)	515
BstFNI	CGCG	1 cut(s)	434
BstMAI	GTCTC	2 cut(s)	13, 233
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 158, 243, 341, 350, 434, 437, 577
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	2 cut(s)	296, 369
BstSLI	GKGCMC	1 cut(s)	487
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	5 cut(s)	171, 221, 270, 424, 583
BstV2I	GAAGAC	2 cut(s)	271, 283
BsuRI	GGCC	3 cut(s)	26, 95, 534
BtgI	CCRYGG	2 cut(s)	66, 432
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	515
BtsIMutI	CAGTG	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	325
CciI	TCATGA	1 cut(s)	565
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	273
Cfr42I	CCGCGG	1 cut(s)	435
CseI	GACGC	2 cut(s)	90, 158
Csp6I	GTAC	4 cut(s)	115, 163, 355, 367
CspAI	ACCGGT	1 cut(s)	584
CviAII	CATG	3 cut(s)	324, 541, 566
CviQI	GTAC	4 cut(s)	115, 163, 355, 367
DdeI	CTNAG	1 cut(s)	247
DraIII	CACNNNGTG	1 cut(s)	225
EaeI	YGGCCR	2 cut(s)	24, 93
Eco147I	AGGCCT	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	296
FaeI	CATG	3 cut(s)	327, 544, 569
FaiI	YATR	7 cut(s)	14, 20, 325, 542, 558, 567, 604
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	3 cut(s)	323, 540, 565
FokI	GGATG	1 cut(s)	522
HaeIII	GGCC	3 cut(s)	26, 95, 534
HapII	CCGG	2 cut(s)	370, 585
HgaI	GACGC	2 cut(s)	90, 158
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	327, 544, 569
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	1 cut(s)	375
HpaII	CCGG	2 cut(s)	370, 585
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	220, 566
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	3 cut(s)	84, 122, 218
HpyAV	CCTTC	3 cut(s)	64, 524, 592
HpyCH4III	ACNGT	3 cut(s)	205, 277, 450
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	43, 560
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 158, 243, 341, 350, 434, 437, 577
HpyF3I	CTNAG	1 cut(s)	247
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	327, 544, 569
KspI	CCGCGG	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	266, 314
Lsp1109I	GCAGC	5 cut(s)	171, 221, 270, 424, 583
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	3 cut(s)	31, 217, 250
MboII	GAAGA	4 cut(s)	271, 274, 277, 283
MhlI	GDGCHC	3 cut(s)	126, 487, 548
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	1 cut(s)	553
MluNI	TGGCCA	1 cut(s)	26
MnlI	CCTC	5 cut(s)	46, 56, 216, 313, 545
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	2 cut(s)	370, 585
MspR9I	CCNGG	2 cut(s)	298, 371
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	8 cut(s)	71, 158, 243, 341, 350, 434, 437, 577
NciI	CCSGG	1 cut(s)	371
NlaIII	CATG	3 cut(s)	327, 544, 569
NlaIV	GGNNCC	1 cut(s)	316
NmeAIII	GCCGAG	1 cut(s)	343
NmuCI	GTSAC	3 cut(s)	31, 217, 250
NspI	RCATGY	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	327
PagI	TCATGA	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	375
Pfl23II	CGTACG	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	270
PfoI	TCCNGGA	1 cut(s)	296
PinAI	ACCGGT	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspLI	CGTACG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	273
RsaI	GTAC	4 cut(s)	116, 164, 356, 368
RsaNI	GTAC	4 cut(s)	115, 163, 355, 367
RseI	CAYNNNNRTG	1 cut(s)	525
SacII	CCGCGG	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	381
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	2 cut(s)	298, 371
SduI	GDGCHC	3 cut(s)	126, 487, 548
SetI	ASST	9 cut(s)	38, 48, 131, 216, 227, 263, 308, 499, 603
Sfr303I	CCGCGG	1 cut(s)	435
SgrBI	CCGCGG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	525
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	1 cut(s)	553
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	5 cut(s)	173, 237, 429, 432, 434
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	296, 369
TaaI	ACNGT	3 cut(s)	205, 277, 450
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	537
TasI	AATT	1 cut(s)	553
TauI	GCSGC	5 cut(s)	176, 240, 431, 434, 437
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	453
TseFI	GTSAC	3 cut(s)	31, 217, 250
TseI	GCWGC	5 cut(s)	184, 234, 258, 437, 571
Tsp45I	GTSAC	3 cut(s)	31, 217, 250
TspDTI	ATGAA	1 cut(s)	543
TspGWI	ACGGA	2 cut(s)	161, 180
TspRI	CASTG	1 cut(s)	453
Van91I	CCANNNNNTGG	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	273
XceI	RCATGY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.