Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007471

Physical Location & Seq

Genomic Coordinates Reverse (-)

2044583 .. 2045983

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGAGAAATCGAAAATCGAATGATAGTTCAAGGAGCAAATCGCAGGTTACTCAAACTCGAAAGAGAGACAACAATGGCAGTCTCGATACCCATTGTCGCCATCGTCACCTCCCTCCACCTCATCGCCTTCATCTTCGCCGTCGGCGCTGAACGGCGCCGTAGCACGGCGAAGATAGTGCCCGATGAGTACGACGAGCGTACCTACTGCGTGTACGGCACGGACGCCTCCACGGTGTACGGATTAGCGGCGTGTGGGCTGCTTCTGGTCAGCCAGGCGGTGCTTAACGGCGTCACCAGGTGTCTCTGTTGCGGCAAAGGTCTAGTCACTGGCTCGTCCACCACTTGGACCGTCTTCTTCTTCGTCTTCTCCTGGACAACCTTTTTGGGAGCGGAGGCGTGCTTGTTGGCTGGGTCGGCAAAGAATGCATACCACACCAAGTACAGGTCGATCTTTAATGCAGATGACTTGTCCTGTGCTACTCTACGCAAAGGGGTGTTTGCCGCCAGCGCTGCTCTTACGCTGTTGTCACTGGCAGGGTCAAGTCTTTACTACTGGGCACATTCCAAAGCTGATACTGGGGGATGGGAGAAGCACCGAAATGAAGGCCTTGACATGAGCAGTTCTAACTACGGGCAGCATGAGCAGCAGCAACAACAAGCCAGTGCATTTCAGAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

228

Amino Acids

24.85

Weight (kDa)

8.67

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68220
fragaria_vesca	FvH4_4g26760 FvH4_4g26760
malus_domestica	MD01G1086300.v1.1 MD06G1233200.v1.1 MD11G1172000.v1.1 MD11G1172100.v1.1 MD13G1035500.v1.1 MD15G1416200.v1.1 MD16G1037500.v1.1 MD16G1286700.v1.1
prunus_persica	Prupe.1G316300_v2.0.a1 Prupe.1G316300_v2.0.a1
pyrus_communis	pycom16g03270
rosa_chinensis	RchiOBHm_Chr4g0434441
rosa_laevigata	RLG00000006671
rosa_multiflora	Rmu_sc0002251.1_g000005 Rmu_sc0005899.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375800
rosa_rugosa	Rorug04G0276700
rosa_samantha	Rh4AG332300 Rh4BG340100 Rh4CG355300 Rh4DG335500
rosa_wichuraiana	Rw4G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AccB1I	GGYRCC	1 cut(s)	156
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccBSI	CCGCTC	1 cut(s)	392
AciI	CCGC	5 cut(s)	248, 278, 312, 392, 504
AcyI	GRCGYC	3 cut(s)	157, 225, 291
AdeI	CACNNNGTG	1 cut(s)	300
AfaI	GTAC	5 cut(s)	191, 202, 215, 239, 443
AfeI	AGCGCT	1 cut(s)	511
AfiI	CCNNNNNNNGG	3 cut(s)	166, 345, 444
AgsI	TTSAA	1 cut(s)	32
AjnI	CCWGG	3 cut(s)	273, 296, 371
AluBI	AGCT	1 cut(s)	572
AluI	AGCT	1 cut(s)	572
Alw26I	GTCTC	3 cut(s)	62, 88, 308
Aor51HI	AGCGCT	1 cut(s)	511
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	5 cut(s)	259, 512, 637, 646, 649
ArsI	GACNNNNNNTTYG	4 cut(s)	309, 341, 367, 399
AspLEI	GCGC	3 cut(s)	149, 159, 512
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	100, 286
AvaII	GGWCC	1 cut(s)	348
BaeGI	GKGCMC	2 cut(s)	183, 562
BaeI	ACNNNNGTAYC	2 cut(s)	184, 217
BanI	GGYRCC	1 cut(s)	156
BbsI	GAAGAC	2 cut(s)	346, 358
BbvI	GCAGC	5 cut(s)	246, 499, 649, 658, 661
BccI	CCATC	2 cut(s)	110, 579
BceAI	ACGGC	6 cut(s)	125, 144, 170, 183, 232, 304
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	3 cut(s)	275, 298, 373
BcoDI	GTCTC	3 cut(s)	62, 88, 308
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	3 cut(s)	150, 160, 513
BfuAI	ACCTGC	1 cut(s)	36
BisI	GCNGC	8 cut(s)	249, 260, 313, 504, 513, 638, 647, 650
BlsI	GCNGC	8 cut(s)	250, 261, 314, 505, 514, 639, 648, 651
Bme1390I	CCNGG	3 cut(s)	275, 298, 373
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	3 cut(s)	275, 298, 373
BmrI	ACTGGG	2 cut(s)	565, 588
BmuI	ACTGGG	2 cut(s)	565, 588
BpiI	GAAGAC	2 cut(s)	346, 358
BsaHI	GRCGYC	3 cut(s)	157, 225, 291
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 345, 444
Bse1I	ACTGG	5 cut(s)	334, 537, 560, 583, 663
BseBI	CCWGG	3 cut(s)	275, 298, 373
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	590
BseLI	CCNNNNNNNGG	3 cut(s)	166, 345, 444
BseNI	ACTGG	5 cut(s)	334, 537, 560, 583, 663
BseSI	GKGCMC	2 cut(s)	183, 562
BseXI	GCAGC	5 cut(s)	246, 499, 649, 658, 661
BseYI	CCCAGC	1 cut(s)	410
BshFI	GGCC	1 cut(s)	609
BshNI	GGYRCC	1 cut(s)	156
BslI	CCNNNNNNNGG	3 cut(s)	166, 345, 444
BsmAI	GTCTC	3 cut(s)	62, 88, 308
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	609
Bsp1286I	GDGCHC	2 cut(s)	183, 562
Bsp143I	GATC	1 cut(s)	450
BspACI	CCGC	5 cut(s)	248, 278, 312, 392, 504
BspANI	GGCC	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	158
BspMI	ACCTGC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	392
BsrI	ACTGG	5 cut(s)	334, 537, 560, 583, 663
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	450
BssNI	GRCGYC	3 cut(s)	157, 225, 291
Bst2UI	CCWGG	3 cut(s)	275, 298, 373
Bst4CI	ACNGT	2 cut(s)	235, 352
BstACI	GRCGYC	3 cut(s)	157, 225, 291
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	400, 508
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	590
BstH2I	RGCGCY	3 cut(s)	150, 160, 513
BstHHI	GCGC	3 cut(s)	149, 159, 512
BstKTI	GATC	1 cut(s)	453
BstMAI	GTCTC	3 cut(s)	62, 88, 308
BstMBI	GATC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 216, 416, 425, 509, 512, 643, 646
BstNI	CCWGG	3 cut(s)	275, 298, 373
BstSCI	CCNGG	3 cut(s)	273, 296, 371
BstSLI	GKGCMC	2 cut(s)	183, 562
BstV1I	GCAGC	5 cut(s)	246, 499, 649, 658, 661
BstV2I	GAAGAC	2 cut(s)	346, 358
BsuRI	GGCC	1 cut(s)	609
BtgI	CCRYGG	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	590
BtsIMutI	CAGTG	3 cut(s)	327, 530, 670
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	400, 508
CfoI	GCGC	3 cut(s)	149, 159, 512
Cfr13I	GGNCC	1 cut(s)	348
CseI	GACGC	2 cut(s)	233, 280
CsiI	ACCWGGT	1 cut(s)	296
Csp6I	GTAC	5 cut(s)	190, 201, 214, 238, 442
CviAII	CATG	2 cut(s)	616, 641
CviJI	RGCY	7 cut(s)	259, 273, 333, 410, 572, 609, 662
CviKI_1	RGCY	7 cut(s)	259, 273, 333, 410, 572, 609, 662
CviQI	GTAC	5 cut(s)	190, 201, 214, 238, 442
DinI	GGCGCC	1 cut(s)	158
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
DraIII	CACNNNGTG	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	348
Eco47III	AGCGCT	1 cut(s)	511
EcoRII	CCWGG	3 cut(s)	273, 296, 371
EcoT22I	ATGCAT	1 cut(s)	430
EgeI	GGCGCC	1 cut(s)	158
EheI	GGCGCC	1 cut(s)	158
FaeI	CATG	2 cut(s)	619, 644
FaiI	YATR	4 cut(s)	430, 617, 642, 682
FatI	CATG	2 cut(s)	615, 640
Fnu4HI	GCNGC	8 cut(s)	249, 260, 313, 504, 513, 638, 647, 650
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	8 cut(s)	249, 260, 313, 504, 513, 638, 647, 650
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	3 cut(s)	148, 158, 511
GluI	GCNGC	8 cut(s)	249, 260, 313, 504, 513, 638, 647, 650
GsaI	CCCAGC	1 cut(s)	414
HaeII	RGCGCY	3 cut(s)	150, 160, 513
HaeIII	GGCC	1 cut(s)	609
HgaI	GACGC	2 cut(s)	233, 280
HhaI	GCGC	3 cut(s)	149, 159, 512
Hin1I	GRCGYC	3 cut(s)	157, 225, 291
Hin1II	CATG	2 cut(s)	619, 644
Hin6I	GCGC	3 cut(s)	147, 157, 510
HinP1I	GCGC	3 cut(s)	147, 157, 510
HphI	GGTGA	2 cut(s)	100, 286
Hpy166II	GTNNAC	3 cut(s)	214, 238, 339
Hpy188I	TCNGA	1 cut(s)	675
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	3 cut(s)	214, 238, 339
Hpy99I	CGWCG	2 cut(s)	146, 197
HpyAV	CCTTC	3 cut(s)	139, 599, 670
HpyCH4III	ACNGT	2 cut(s)	235, 352
HpyCH4V	TGCA	3 cut(s)	428, 461, 668
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 216, 416, 425, 509, 512, 643, 646
Hsp92I	GRCGYC	3 cut(s)	157, 225, 291
Hsp92II	CATG	2 cut(s)	619, 644
HspAI	GCGC	3 cut(s)	147, 157, 510
KasI	GGCGCC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	35, 389
Lsp1109I	GCAGC	5 cut(s)	246, 499, 649, 658, 661
MabI	ACCWGGT	1 cut(s)	296
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	5 cut(s)	48, 106, 292, 325, 528
MalI	GATC	1 cut(s)	452
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	1 cut(s)	450
MboII	GAAGA	6 cut(s)	127, 184, 346, 349, 352, 358
MhlI	GDGCHC	2 cut(s)	183, 562
Mly113I	GGCGCC	1 cut(s)	157
MnlI	CCTC	5 cut(s)	121, 125, 131, 238, 388
Mph1103I	ATGCAT	1 cut(s)	430
MseI	TTAA	2 cut(s)	285, 456
MslI	CAYNNNNRTG	1 cut(s)	600
MspR9I	CCNGG	3 cut(s)	275, 298, 373
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	3 cut(s)	275, 298, 373
MwoI	GCNNNNNNNGC	8 cut(s)	146, 216, 416, 425, 509, 512, 643, 646
NarI	GGCGCC	1 cut(s)	157
NdeII	GATC	1 cut(s)	450
NlaIII	CATG	2 cut(s)	619, 644
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	4 cut(s)	106, 292, 325, 528
NsiI	ATGCAT	1 cut(s)	430
PceI	AGGCCT	1 cut(s)	609
PctI	GAATGC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	345
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	8 cut(s)	250, 261, 314, 505, 514, 639, 648, 651
PluTI	GGCGCC	1 cut(s)	160
Psp6I	CCWGG	3 cut(s)	273, 296, 371
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	3 cut(s)	273, 296, 371
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	348
RsaI	GTAC	5 cut(s)	191, 202, 215, 239, 443
RsaNI	GTAC	5 cut(s)	190, 201, 214, 238, 442
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	285, 456
SatI	GCNGC	8 cut(s)	249, 260, 313, 504, 513, 638, 647, 650
Sau3AI	GATC	1 cut(s)	450
Sau96I	GGNCC	1 cut(s)	348
ScrFI	CCNGG	3 cut(s)	275, 298, 373
SduI	GDGCHC	2 cut(s)	183, 562
SexAI	ACCWGGT	1 cut(s)	296
SfoI	GGCGCC	1 cut(s)	158
SinI	GGWCC	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	600
SseBI	AGGCCT	1 cut(s)	609
SsiI	CCGC	5 cut(s)	248, 278, 312, 392, 504
SspDI	GGCGCC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	609
StyD4I	CCNGG	3 cut(s)	273, 296, 371
TaaI	ACNGT	2 cut(s)	235, 352
TaqI	TCGA	5 cut(s)	12, 19, 60, 86, 449
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	3 cut(s)	251, 315, 506
Tru1I	TTAA	2 cut(s)	285, 456
Tru9I	TTAA	2 cut(s)	285, 456
TscAI	CASTG	3 cut(s)	334, 537, 670
TseFI	GTSAC	4 cut(s)	106, 292, 325, 528
TseI	GCWGC	5 cut(s)	259, 512, 637, 646, 649
Tsp45I	GTSAC	4 cut(s)	106, 292, 325, 528
TspDTI	ATGAA	2 cut(s)	121, 618
TspGWI	ACGGA	2 cut(s)	236, 255
TspRI	CASTG	3 cut(s)	334, 537, 670
Van91I	CCANNNNNTGG	1 cut(s)	345
VpaK11BI	GGWCC	1 cut(s)	348
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.