Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005899.1

Orthogroup ID

OG0007471

Physical Location & Seq

Genomic Coordinates Reverse (-)

20563 .. 22376

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005899.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgcggagaaaatatgatcttttagaggtggttttcaagttcaagatcgggcctcaggtcaatgcctcgggcttcgttcccatgaccttgctagtggtttgggtttcttctcgcggatggtgtctccggttgccctatgatattaaggtcaagaaaacatcggtcctctggcatgaccaccggaaaaacgctagaaaccccaaaccaaaagcagtcgcagatcttttcatctccgctatggcagtctccgttcccatagtggccatcatcacctctctccacctcatcgccttcattttcgccgtcggcgccgaacgacgccgtagcaccgcgaagatagtgcccgacgagtacgacgagcaaacctactgcgtttacggcaccgacgcttccaccgtgtacggactggccgcgttcgggcttcttctgctcagccacacggtgcttaacggcgtcaccaggtgtctctgcttcggcaaaggcttaatcaccggctcctctactacttggactgtcttcttcttcgtcttctcctggacaacctttttgggagccgaggcatgcttattggcagggtcagcaaggaatgcctatcacacaaagtacagggggaaatttaacctagacgacttgtcctgtgccactctccgtaagggcgtgtttgctgcagcagctgctcttacactgttgtcgctgatagggtcaaacctttactactggacacattccaaagctgatactggagggtgggagaagcaccgcaatgaaggccttggcatgggcaattccaattatgggcagcacgagcagcagctgcagcaaaccactggattcgagaaggtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

281

Amino Acids

31.18

Weight (kDa)

9.48

Isoelectric Point (pI)

25.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68220
fragaria_vesca	FvH4_4g26760 FvH4_4g26760
malus_domestica	MD01G1086300.v1.1 MD06G1233200.v1.1 MD11G1172000.v1.1 MD11G1172100.v1.1 MD13G1035500.v1.1 MD15G1416200.v1.1 MD16G1037500.v1.1 MD16G1286700.v1.1
prunus_persica	Prupe.1G316300_v2.0.a1 Prupe.1G316300_v2.0.a1
pyrus_communis	pycom16g03270
rosa_chinensis	RchiOBHm_Chr4g0434441
rosa_laevigata	RLG00000006671
rosa_multiflora	Rmu_sc0002251.1_g000005 Rmu_sc0005899.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375800
rosa_rugosa	Rorug04G0276700
rosa_samantha	Rh4AG332300 Rh4BG340100 Rh4CG355300 Rh4DG335500
rosa_wichuraiana	Rw4G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	308, 380
AccII	CGCG	3 cut(s)	114, 332, 413
AciI	CCGC	6 cut(s)	4, 114, 234, 330, 411, 760
AcoI	YGGCCR	2 cut(s)	261, 408
AcsI	RAATTY	1 cut(s)	614
AcyI	GRCGYC	3 cut(s)	309, 319, 453
AdeI	CACNNNGTG	2 cut(s)	442, 462
AfaI	GTAC	3 cut(s)	353, 401, 605
AfiI	CCNNNNNNNGG	3 cut(s)	417, 778, 795
AgsI	TTSAA	2 cut(s)	37, 43
AhdI	GACNNNNNGTC	1 cut(s)	631
AjnI	CCWGG	2 cut(s)	458, 533
AluBI	AGCT	3 cut(s)	674, 734, 814
AluI	AGCT	3 cut(s)	674, 734, 814
Alw26I	GTCTC	3 cut(s)	128, 250, 470
AlwNI	CAGNNNCTG	2 cut(s)	674, 814
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	4 cut(s)	50, 261, 408, 769
ApeKI	GCWGC	9 cut(s)	665, 668, 671, 674, 799, 808, 811, 814, 817
ApoI	RAATTY	1 cut(s)	614
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	50, 163
AsuHPI	GGTGA	3 cut(s)	262, 448, 481
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	163
AxyI	CCTNAGG	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	2 cut(s)	308, 380
BauI	CACGAG	1 cut(s)	803
BbsI	GAAGAC	2 cut(s)	508, 520
BbvI	GCAGC	9 cut(s)	652, 661, 680, 683, 801, 811, 820, 823, 829
BccI	CCATC	2 cut(s)	111, 272
BceAI	ACGGC	4 cut(s)	287, 306, 394, 466
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	2 cut(s)	460, 535
BcoDI	GTCTC	3 cut(s)	128, 250, 470
BfaI	CTAG	3 cut(s)	92, 192, 623
BfmI	CTRYAG	2 cut(s)	666, 815
BfoI	RGCGCY	1 cut(s)	312
BglII	AGATCT	1 cut(s)	220
BlpI	GCTNAGC	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	460, 535
Bme18I	GGWCC	1 cut(s)	163
BmeRI	GACNNNNNGTC	1 cut(s)	631
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	50, 163
BmiI	GGNNCC	4 cut(s)	310, 382, 496, 553
BmrFI	CCNGG	2 cut(s)	460, 535
BpiI	GAAGAC	2 cut(s)	508, 520
BpmI	CTGGAG	1 cut(s)	762
Bpu1102I	GCTNAGC	1 cut(s)	431
BsaHI	GRCGYC	3 cut(s)	309, 319, 453
BsaJI	CCNNGG	3 cut(s)	66, 555, 772
BsaWI	WCCGGW	2 cut(s)	126, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	417, 778, 795
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	4 cut(s)	411, 722, 745, 832
Bse21I	CCTNAGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	769
BseBI	CCWGG	2 cut(s)	460, 535
BseDI	CCNNGG	3 cut(s)	66, 555, 772
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	3 cut(s)	417, 778, 795
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	2 cut(s)	68, 445
BseNI	ACTGG	4 cut(s)	411, 722, 745, 832
BseRI	GAGGAG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	9 cut(s)	652, 661, 680, 683, 801, 811, 820, 823, 829
Bsh1236I	CGCG	3 cut(s)	114, 332, 413
BshFI	GGCC	4 cut(s)	52, 263, 410, 771
BshNI	GGYRCC	2 cut(s)	308, 380
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	127, 181, 492
BslI	CCNNNNNNNGG	3 cut(s)	417, 778, 795
BsmAI	GTCTC	3 cut(s)	128, 250, 470
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	4 cut(s)	52, 263, 410, 771
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	16, 45, 220
Bsp1720I	GCTNAGC	1 cut(s)	431
BspACI	CCGC	6 cut(s)	4, 114, 234, 330, 411, 760
BspANI	GGCC	4 cut(s)	52, 263, 410, 771
BspCNI	CTCAG	2 cut(s)	67, 444
BspFNI	CGCG	3 cut(s)	114, 332, 413
BspLI	GGNNCC	4 cut(s)	310, 382, 496, 553
BspMAI	CTGCAG	2 cut(s)	670, 819
BspT107I	GGYRCC	2 cut(s)	308, 380
BsrDI	GCAATG	1 cut(s)	769
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	4 cut(s)	411, 722, 745, 832
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	3 cut(s)	66, 555, 772
BssMI	GATC	3 cut(s)	16, 45, 220
BssNI	GRCGYC	3 cut(s)	309, 319, 453
BssSI	CACGAG	1 cut(s)	803
BssT1I	CCWWGG	1 cut(s)	772
Bst2BI	CACGAG	1 cut(s)	803
Bst2UI	CCWGG	2 cut(s)	460, 535
Bst4CI	ACNGT	4 cut(s)	397, 442, 514, 687
BstACI	GRCGYC	3 cut(s)	309, 319, 453
BstAPI	GCANNNNNTGC	3 cut(s)	587, 674, 814
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	2 cut(s)	54, 431
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	3 cut(s)	114, 332, 413
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	3 cut(s)	19, 48, 223
BstMAI	GTCTC	3 cut(s)	128, 250, 470
BstMBI	GATC	3 cut(s)	16, 45, 220
BstNI	CCWGG	2 cut(s)	460, 535
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	2 cut(s)	458, 533
BstSFI	CTRYAG	2 cut(s)	666, 815
BstSLI	GKGCMC	1 cut(s)	345
BstUI	CGCG	3 cut(s)	114, 332, 413
BstV1I	GCAGC	9 cut(s)	652, 661, 680, 683, 801, 811, 820, 823, 829
BstV2I	GAAGAC	2 cut(s)	508, 520
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	54
BsuRI	GGCC	4 cut(s)	52, 263, 410, 771
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	683, 825
Cac8I	GCNNGC	1 cut(s)	562
CaiI	CAGNNNCTG	2 cut(s)	674, 814
CfoI	GCGC	1 cut(s)	311
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	2 cut(s)	50, 163
CseI	GACGC	3 cut(s)	327, 395, 442
CsiI	ACCWGGT	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	352, 400, 604
CviAII	CATG	4 cut(s)	82, 173, 561, 778
CviQI	GTAC	3 cut(s)	352, 400, 604
DdeI	CTNAG	2 cut(s)	54, 431
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	3 cut(s)	18, 47, 222
DpnII	GATC	3 cut(s)	16, 45, 220
DraIII	CACNNNGTG	2 cut(s)	442, 462
DriI	GACNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	2 cut(s)	261, 408
Eam1105I	GACNNNNNGTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	772
Eco147I	AGGCCT	1 cut(s)	771
Eco47I	GGWCC	1 cut(s)	163
Eco81I	CCTNAGG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	458, 533
EcoT14I	CCWWGG	1 cut(s)	772
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	4 cut(s)	85, 176, 564, 781
FaiI	YATR	9 cut(s)	15, 83, 138, 174, 239, 257, 562, 779, 795
FatI	CATG	4 cut(s)	81, 172, 560, 777
FokI	GGATG	1 cut(s)	129
FspBI	CTAG	3 cut(s)	92, 192, 623
GlaI	GCGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	762
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	4 cut(s)	52, 263, 410, 771
HapII	CCGG	3 cut(s)	127, 181, 492
HgaI	GACGC	3 cut(s)	327, 395, 442
HhaI	GCGC	1 cut(s)	311
Hin1I	GRCGYC	3 cut(s)	309, 319, 453
Hin1II	CATG	4 cut(s)	85, 176, 564, 781
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HinfI	GANTC	1 cut(s)	831
HpaII	CCGG	3 cut(s)	127, 181, 492
HphI	GGTGA	3 cut(s)	262, 448, 481
Hpy166II	GTNNAC	2 cut(s)	376, 400
Hpy188III	TCNNGA	3 cut(s)	43, 151, 835
Hpy8I	GTNNAC	2 cut(s)	376, 400
Hpy99I	CGWCG	5 cut(s)	308, 321, 350, 359, 389
HpyAV	CCTTC	3 cut(s)	301, 761, 832
HpyCH4III	ACNGT	4 cut(s)	397, 442, 514, 687
HpyCH4V	TGCA	2 cut(s)	668, 817
HpyF3I	CTNAG	2 cut(s)	54, 431
Hsp92I	GRCGYC	3 cut(s)	309, 319, 453
Hsp92II	CATG	4 cut(s)	85, 176, 564, 781
HspAI	GCGC	1 cut(s)	309
KasI	GGCGCC	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	16, 45, 220
LmnI	GCTCC	2 cut(s)	500, 551
Lsp1109I	GCAGC	9 cut(s)	652, 661, 680, 683, 801, 811, 820, 823, 829
MabI	ACCWGGT	1 cut(s)	458
MaeI	CTAG	3 cut(s)	92, 192, 623
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	3 cut(s)	18, 47, 222
MboI	GATC	3 cut(s)	16, 45, 220
MboII	GAAGA	7 cut(s)	99, 346, 416, 508, 511, 514, 520
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	345
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	3 cut(s)	614, 784, 790
MluNI	TGGCCA	1 cut(s)	263
Mly113I	GGCGCC	1 cut(s)	309
MnlI	CCTC	9 cut(s)	19, 63, 76, 176, 283, 293, 508, 550, 737
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	4 cut(s)	144, 447, 485, 618
MslI	CAYNNNNRTG	1 cut(s)	762
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	674, 814
MspI	CCGG	3 cut(s)	127, 181, 492
MspR9I	CCNGG	2 cut(s)	460, 535
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	2 cut(s)	460, 535
MvnI	CGCG	3 cut(s)	114, 332, 413
NarI	GGCGCC	1 cut(s)	309
NdeII	GATC	3 cut(s)	16, 45, 220
NlaIII	CATG	4 cut(s)	85, 176, 564, 781
NlaIV	GGNNCC	4 cut(s)	310, 382, 496, 553
NmeAIII	GCCGAG	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	564
PaeI	GCATGC	1 cut(s)	564
PceI	AGGCCT	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 393
PctI	GAATGC	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	831
PfoI	TCCNGGA	1 cut(s)	533
PluTI	GGCGCC	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	458, 533
PspGI	CCWGG	2 cut(s)	458, 533
PspN4I	GGNNCC	4 cut(s)	310, 382, 496, 553
PspPI	GGNCC	2 cut(s)	50, 163
PstI	CTGCAG	2 cut(s)	670, 819
PstNI	CAGNNNCTG	2 cut(s)	674, 814
PsuI	RGATCY	1 cut(s)	220
PvuII	CAGCTG	2 cut(s)	674, 814
RsaI	GTAC	3 cut(s)	353, 401, 605
RsaNI	GTAC	3 cut(s)	352, 400, 604
RseI	CAYNNNNRTG	1 cut(s)	762
SaqAI	TTAA	4 cut(s)	144, 447, 485, 618
Sau3AI	GATC	3 cut(s)	16, 45, 220
Sau96I	GGNCC	2 cut(s)	50, 163
ScrFI	CCNGG	2 cut(s)	460, 535
SduI	GDGCHC	1 cut(s)	345
SexAI	ACCWGGT	1 cut(s)	458
SfcI	CTRYAG	2 cut(s)	666, 815
SfoI	GGCGCC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	762
SphI	GCATGC	1 cut(s)	564
Sse9I	AATT	3 cut(s)	614, 784, 790
SseBI	AGGCCT	1 cut(s)	771
SsiI	CCGC	6 cut(s)	4, 114, 234, 330, 411, 760
SspDI	GGCGCC	1 cut(s)	308
SspMI	CTAG	3 cut(s)	92, 192, 623
StuI	AGGCCT	1 cut(s)	771
StyD4I	CCNGG	2 cut(s)	458, 533
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	4 cut(s)	397, 442, 514, 687
TaqI	TCGA	1 cut(s)	834
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	614, 784, 790
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	831
Tru1I	TTAA	4 cut(s)	144, 447, 485, 618
Tru9I	TTAA	4 cut(s)	144, 447, 485, 618
TscAI	CASTG	2 cut(s)	690, 832
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	9 cut(s)	665, 668, 671, 674, 799, 808, 811, 814, 817
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	3 cut(s)	217, 283, 780
TspGWI	ACGGA	3 cut(s)	238, 417, 638
TspRI	CASTG	2 cut(s)	690, 832
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	614
XceI	RCATGY	1 cut(s)	564
XspI	CTAG	3 cut(s)	92, 192, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.