Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004916

Physical Location & Seq

Genomic Coordinates Reverse (-)

30654041 .. 30657621

Gene Structure 3581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G319300.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGTCTATAGACGGCCCAGCCGAGCGAAGAAAGCAACCGCCTCAGACTCAGACGCCAAGAACAGGCAACGGGAACTGCGGCATTTCTTCGATGAGCTTGGCAAACAGGCTGAGACTGAACCCTAACAAGGAGCACAAGCCGGACAGCTACGACGACCTTCATCAATTGGAGTTTAGTCCCTTGCTCTTCAGCTCGCTGGAGCGCTACTTGCCTCCCACCATGCTCAATGGGTCACGTGACCTCAAGCTCCAGTACATGAGAGACATTCTCCTACGCTACTCGTCCGAGAGTGAGCGCACTCGTGTAAGAAAATGGCAATTCTCTGCTCTGTCTCTCTCTCTCTCTCTGGTTCAACGACATAGAGAATACAGGCAGAAGATCATCTCACACTATCAGCCTGTACACAAGGAGTTATACACTATGCAAGCTGCACAGTTCTTTGTCCCCTCATTTCTCAAAGCAATCAATGAGAATACAGAGGATAGCTTTAGAAGTATAATGGCTGAACCCGCTCCAGGAATTTATACATTTGAAATGCTTCAGCCATACTTCTGTGAATTGTTATTATCCGAGGTGGAAACTTTTGAAAGGTGGGTCATTGAGACAAATTTCAGAATCATGCGACCAAACACAATGAATAGATACGGTTGTGTTCTTGATGACTTTGGCCTAGAAACCATGCTTGACAAGTTGATGGAGGACTTTATACGCCCTATGTCTAGAGTTTTCTTCCCCGAAGTTGGTGGATCCACGCTGGATTCTCATCATGGTTTTGTTGTTGAATATGGAACTGATAAGGATTCAGAGCTTGGTTTTCATGTGGATGACTCAGAAGTCACCTTGAATGTTTGCTTGGGCAAGCAATTTTCTGGCGGAGAATTGTTCTTTCGAGGTATTCGATGTGATAAACATGTAAATTCAGAGACACAATCAGAGGAAATCTTTGATTATTCTCATGTTCCGGGGCATGCGGTTCTTCATCGTGGTCGCAATCGGCATGGTGCTAGAGCCACAACATCAGGGTGTCGAGTCAACTTACTACTGTGGTGCAGAAGTTCGGTCTTTAGAGAGCTGAAGAAGTATCAGAAAGATTCTTCTAACTGGTGTGGAGAGTGCCAGCGTGAGAAGAAAGAAAGGCAGCGTCAATCAATTGCTGCCACCAAACTGGAATTGCTCAAGAGAGATGGAAAACCCACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

401

Amino Acids

46.44

Weight (kDa)

8.29

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22950
fragaria_vesca	FvH4_4g26460 FvH4_4g26460 FvH4_4g26460
malus_domestica	MD13G1033500.v1.1 MD16G1035400.v1.1
prunus_persica	Prupe.1G319300_v2.0.a1 Prupe.1G319300_v2.0.a1 Prupe.1G319300_v2.0.a1 Prupe.1G319300_v2.0.a1 Prupe.1G319300_v2.0.a1 Prupe.1G319300_v2.0.a1 Prupe.1G319300_v2.0.a1
pyrus_communis	pycom13g02890 pycom16g03030
rosa_chinensis	RchiOBHm_Chr4g0434101
rosa_laevigata	RLG00000006700
rosa_multiflora	Rmu_sc0000352.1_g000033
rosa_roxburghii	Rroxscaffold_5G00375500
rosa_rugosa	Rorug04G0273600 Rorug04G0273700 Rorug04G0273800 Rorug04G0273900 Rorug04G0274000 Rorug04G0274100
rosa_samantha	Rh4AG329300 Rh4BG336700 Rh4CG352100 Rh4DG332800
rosa_wichuraiana	Rw4G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	833
AccBSI	CCGCTC	1 cut(s)	512
AciI	CCGC	5 cut(s)	38, 78, 510, 873, 971
AclWI	GGATC	2 cut(s)	741, 754
AcsI	RAATTY	3 cut(s)	519, 607, 916
AcuI	CTGAAG	3 cut(s)	172, 524, 1094
AcvI	CACGTG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	254, 402
AfeI	AGCGCT	1 cut(s)	203
AfiI	CCNNNNNNNGG	4 cut(s)	62, 127, 515, 740
AflIII	ACRYGT	1 cut(s)	910
AgsI	TTSAA	5 cut(s)	353, 533, 587, 782, 844
AjnI	CCWGG	1 cut(s)	514
AjuI	GAANNNNNNNTTGG	2 cut(s)	836, 868
AluBI	AGCT	8 cut(s)	96, 147, 192, 247, 428, 486, 808, 1072
AluI	AGCT	8 cut(s)	96, 147, 192, 247, 428, 486, 808, 1072
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	5 cut(s)	106, 255, 336, 596, 917
AlwI	GGATC	2 cut(s)	741, 754
Aor51HI	AGCGCT	1 cut(s)	203
AoxI	GGCC	2 cut(s)	13, 667
ApeKI	GCWGC	3 cut(s)	428, 1138, 1154
ApoI	RAATTY	3 cut(s)	519, 607, 916
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	204, 297
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	963
AsuHPI	GGTGA	1 cut(s)	829
BaeI	ACNNNNGTAYC	2 cut(s)	634, 667
BamHI	GGATCC	1 cut(s)	746
BauI	CACGAG	1 cut(s)	300
BbrPI	CACGTG	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	415, 1141, 1150
BccI	CCATC	2 cut(s)	688, 1178
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	516
BcnI	CCSGG	1 cut(s)	963
BcoDI	GTCTC	5 cut(s)	106, 255, 336, 596, 917
BfaI	CTAG	3 cut(s)	671, 720, 1005
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	4 cut(s)	79, 429, 1139, 1155
BlsI	GCNGC	4 cut(s)	80, 430, 1140, 1156
Bme1390I	CCNGG	2 cut(s)	516, 963
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	748
BmrFI	CCNGG	2 cut(s)	516, 963
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
BpmI	CTGGAG	3 cut(s)	218, 233, 498
BpuEI	CTTGAG	2 cut(s)	227, 1160
BpuMI	CCSGG	1 cut(s)	963
BsaAI	YACGTR	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	762
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	570, 962
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 127, 515, 740
Bse1I	ACTGG	3 cut(s)	250, 1106, 1170
Bse8I	GATNNNNATC	1 cut(s)	762
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	570, 962
BseGI	GGATG	1 cut(s)	829
BseJI	GATNNNNATC	1 cut(s)	762
BseLI	CCNNNNNNNGG	4 cut(s)	62, 127, 515, 740
BseMII	CTCAG	4 cut(s)	56, 62, 101, 843
BseNI	ACTGG	3 cut(s)	250, 1106, 1170
BseXI	GCAGC	3 cut(s)	415, 1141, 1150
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	2 cut(s)	414, 1069
BshFI	GGCC	2 cut(s)	15, 669
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	140, 962
BslFI	GGGAC	2 cut(s)	162, 428
BslI	CCNNNNNNNGG	4 cut(s)	62, 127, 515, 740
BsmAI	GTCTC	5 cut(s)	106, 255, 336, 596, 917
BsmFI	GGGAC	2 cut(s)	162, 428
BsnI	GGCC	2 cut(s)	15, 669
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	2 cut(s)	378, 746
BspACI	CCGC	5 cut(s)	38, 78, 510, 873, 971
BspANI	GGCC	2 cut(s)	15, 669
BspCNI	CTCAG	4 cut(s)	55, 61, 102, 842
BspLI	GGNNCC	1 cut(s)	748
BspPI	GGATC	2 cut(s)	741, 754
BspQI	GCTCTTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	250, 1106, 1170
BssECI	CCNNGG	2 cut(s)	570, 962
BssMI	GATC	2 cut(s)	378, 746
BssNI	GRCGYC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	3 cut(s)	435, 647, 1044
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	400
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	5 cut(s)	194, 426, 860, 969, 1118
BstDEI	CTNAG	4 cut(s)	42, 48, 110, 829
BstF5I	GGATG	1 cut(s)	829
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	204, 297
BstKTI	GATC	2 cut(s)	381, 749
BstMAI	GTCTC	5 cut(s)	106, 255, 336, 596, 917
BstMBI	GATC	2 cut(s)	378, 746
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 208, 509
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	2 cut(s)	914, 971
BstSCI	CCNGG	2 cut(s)	514, 961
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	3 cut(s)	415, 1141, 1150
BstX2I	RGATCY	1 cut(s)	746
BstXI	CCANNNNNNTGG	1 cut(s)	1165
BstYI	RGATCY	1 cut(s)	746
BsuRI	GGCC	2 cut(s)	15, 669
BtsCI	GGATG	1 cut(s)	829
Cac8I	GCNNGC	5 cut(s)	194, 426, 860, 969, 1118
CfoI	GCGC	2 cut(s)	204, 297
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	2 cut(s)	61, 1130
Csp6I	GTAC	2 cut(s)	253, 401
CviQI	GTAC	2 cut(s)	253, 401
DdeI	CTNAG	4 cut(s)	42, 48, 110, 829
DpnI	GATC	2 cut(s)	380, 748
DpnII	GATC	2 cut(s)	378, 746
DrdI	GACNNNNNNGTC	1 cut(s)	833
DseDI	GACNNNNNNGTC	1 cut(s)	833
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	888
Eco47III	AGCGCT	1 cut(s)	203
Eco57I	CTGAAG	3 cut(s)	172, 524, 1094
Eco72I	CACGTG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	514
FaqI	GGGAC	2 cut(s)	162, 428
FauI	CCCGC	1 cut(s)	517
Fnu4HI	GCNGC	4 cut(s)	79, 429, 1139, 1155
FokI	GGATG	1 cut(s)	836
Fsp4HI	GCNGC	4 cut(s)	79, 429, 1139, 1155
FspBI	CTAG	3 cut(s)	671, 720, 1005
GlaI	GCGC	2 cut(s)	203, 296
GluI	GCNGC	4 cut(s)	79, 429, 1139, 1155
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	3 cut(s)	218, 233, 498
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	15, 669
HapII	CCGG	2 cut(s)	140, 962
HgaI	GACGC	2 cut(s)	61, 1130
HhaI	GCGC	2 cut(s)	204, 297
Hin1I	GRCGYC	1 cut(s)	53
Hin6I	GCGC	2 cut(s)	202, 295
HinP1I	GCGC	2 cut(s)	202, 295
HincII	GTYRAC	1 cut(s)	1033
HindII	GTYRAC	1 cut(s)	1033
HinfI	GANTC	7 cut(s)	46, 615, 758, 800, 827, 1029, 1091
HpaII	CCGG	2 cut(s)	140, 962
HphI	GGTGA	1 cut(s)	829
Hpy166II	GTNNAC	2 cut(s)	403, 1033
Hpy188III	TCNNGA	4 cut(s)	656, 720, 1177, 1200
Hpy8I	GTNNAC	2 cut(s)	403, 1033
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	3 cut(s)	435, 647, 1044
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	424, 431, 1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 208, 509
HpyF3I	CTNAG	4 cut(s)	42, 48, 110, 829
HpySE526I	ACGT	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	53
HspAI	GCGC	2 cut(s)	202, 295
Kzo9I	GATC	2 cut(s)	378, 746
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	4 cut(s)	130, 199, 252, 517
Lsp1109I	GCAGC	3 cut(s)	415, 1141, 1150
MaeI	CTAG	3 cut(s)	671, 720, 1005
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	3 cut(s)	231, 236, 835
MalI	GATC	2 cut(s)	380, 748
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	2 cut(s)	378, 746
MboII	GAAGA	9 cut(s)	39, 78, 178, 388, 721, 968, 1086, 1087, 1138
MfeI	CAATTG	2 cut(s)	164, 1149
MflI	RGATCY	1 cut(s)	746
MhlI	GDGCHC	1 cut(s)	135
MlyI	GAGTC	3 cut(s)	40, 821, 1038
MnlI	CCTC	9 cut(s)	51, 222, 251, 457, 472, 565, 691, 884, 928
MroXI	GAANNNNTTC	1 cut(s)	537
MslI	CAYNNNNRTG	2 cut(s)	822, 1021
MspI	CCGG	2 cut(s)	140, 962
MspR9I	CCNGG	2 cut(s)	516, 963
MunI	CAATTG	2 cut(s)	164, 1149
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	31, 208, 509
NciI	CCSGG	1 cut(s)	963
NdeII	GATC	2 cut(s)	378, 746
NlaIV	GGNNCC	1 cut(s)	748
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	3 cut(s)	231, 236, 835
NspI	RCATGY	2 cut(s)	914, 971
PaeI	GCATGC	1 cut(s)	971
PciI	ACATGT	1 cut(s)	910
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 895
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	4 cut(s)	615, 758, 800, 1091
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	4 cut(s)	80, 430, 1140, 1156
PleI	GAGTC	3 cut(s)	40, 821, 1037
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
PpsI	GAGTC	3 cut(s)	40, 821, 1037
Ppu21I	YACGTR	1 cut(s)	236
PscI	ACATGT	1 cut(s)	910
Psp6I	CCWGG	1 cut(s)	514
PspCI	CACGTG	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	748
PspPI	GGNCC	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	746
RsaI	GTAC	2 cut(s)	254, 402
RsaNI	GTAC	2 cut(s)	253, 401
RseI	CAYNNNNRTG	2 cut(s)	822, 1021
SapI	GCTCTTC	1 cut(s)	191
SatI	GCNGC	4 cut(s)	79, 429, 1139, 1155
Sau3AI	GATC	2 cut(s)	378, 746
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	3 cut(s)	40, 821, 1038
ScrFI	CCNGG	2 cut(s)	516, 963
SduI	GDGCHC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	2 cut(s)	822, 1021
SmlI	CTYRAG	2 cut(s)	242, 1175
SmoI	CTYRAG	2 cut(s)	242, 1175
SphI	GCATGC	1 cut(s)	971
SsiI	CCGC	5 cut(s)	38, 78, 510, 873, 971
SspMI	CTAG	3 cut(s)	671, 720, 1005
StyD4I	CCNGG	2 cut(s)	514, 961
TaaI	ACNGT	3 cut(s)	435, 647, 1044
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	4 cut(s)	89, 889, 898, 1027
TaqII	GACCGA	1 cut(s)	1048
TatI	WGTACW	2 cut(s)	252, 400
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	4 cut(s)	615, 758, 800, 1091
TseFI	GTSAC	3 cut(s)	231, 236, 835
TseI	GCWGC	3 cut(s)	428, 1138, 1154
Tsp45I	GTSAC	3 cut(s)	231, 236, 835
TspDTI	ATGAA	4 cut(s)	149, 650, 806, 968
XapI	RAATTY	3 cut(s)	519, 607, 916
XbaI	TCTAGA	1 cut(s)	719
XceI	RCATGY	2 cut(s)	914, 971
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	3 cut(s)	671, 720, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.