ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G01130 AT2G01130 |
| fragaria_vesca | FvH4_4g26440 FvH4_4g26440 FvH4_4g26440 FvH4_4g26440 FvH4_4g26440 FvH4_4g26440 FvH4_4g26440 |
| malus_domestica | MD13G1033300.v1.1 MD16G1035100.v1.1 |
| prunus_persica | Prupe.1G319600_v2.0.a1 Prupe.1G319600_v2.0.a1 Prupe.1G319600_v2.0.a1 |
| pyrus_communis | pycom13g02870 pycom14g02420 pycom16g02990 |
| rosa_chinensis | RchiOBHm_Chr4g0434071 |
| rosa_laevigata | RLG00000006703 |
| rosa_multiflora | Rmu_sc0000352.1_g000029 |
| rosa_roxburghii | Rroxscaffold_5G00375480 |
| rosa_rugosa | Rorug04G0273300 Rorug04G0273400 |
| rosa_samantha | Rh4AG329000 Rh4BG336300 Rh4CG351700 Rh4DG332600 |
| rosa_wichuraiana | Rw4G028520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 3124 |
| AccB1I | GGYRCC | 4 cut(s) | 155, 651, 1615, 2456 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2435, 3558, 3562 |
| AccI | GTMKAC | 1 cut(s) | 1396 |
| AccII | CGCG | 4 cut(s) | 125, 393, 412, 2327 |
| AciI | CCGC | 7 cut(s) | 57, 60, 173, 871, 2327, 2608, 3232 |
| AclWI | GGATC | 5 cut(s) | 1389, 2471, 2484, 2510, 3258 |
| AcoI | YGGCCR | 1 cut(s) | 3277 |
| AcsI | RAATTY | 8 cut(s) | 716, 1053, 1297, 1332, 2220, 2720, 2838, 2940 |
| AcuI | CTGAAG | 4 cut(s) | 942, 1152, 1859, 3467 |
| AcyI | GRCGYC | 4 cut(s) | 156, 652, 836, 2457 |
| AfaI | GTAC | 3 cut(s) | 152, 289, 1120 |
| AflIII | ACRYGT | 2 cut(s) | 2143, 3603 |
| AjiI | CACGTC | 2 cut(s) | 530, 2144 |
| AjnI | CCWGG | 8 cut(s) | 1486, 1789, 2096, 2152, 2472, 2833, 3188, 3361 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 485, 517 |
| Alw21I | GWGCWC | 2 cut(s) | 281, 2856 |
| Alw26I | GTCTC | 5 cut(s) | 959, 1988, 2045, 2247, 2634 |
| Alw44I | GTGCAC | 1 cut(s) | 2852 |
| AlwI | GGATC | 5 cut(s) | 1389, 2471, 2484, 2510, 3258 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2902, 3545, 3562 |
| Ama87I | CYCGRG | 1 cut(s) | 2928 |
| ApaLI | GTGCAC | 1 cut(s) | 2852 |
| ApoI | RAATTY | 8 cut(s) | 716, 1053, 1297, 1332, 2220, 2720, 2838, 2940 |
| AseI | ATTAAT | 1 cut(s) | 2010 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 750, 861, 1089, 1359, 2281, 2720, 3049 |
| AspLEI | GCGC | 4 cut(s) | 158, 654, 1427, 2459 |
| AsuII | TTCGAA | 1 cut(s) | 1507 |
| AsuNHI | GCTAGC | 1 cut(s) | 1894 |
| AvaI | CYCGRG | 1 cut(s) | 2928 |
| AvaII | GGWCC | 7 cut(s) | 133, 384, 613, 1691, 3286, 3359, 3634 |
| AxyI | CCTNAGG | 1 cut(s) | 1950 |
| BaeGI | GKGCMC | 1 cut(s) | 2856 |
| BamHI | GGATCC | 1 cut(s) | 2476 |
| BanI | GGYRCC | 4 cut(s) | 155, 651, 1615, 2456 |
| BanII | GRGCYC | 2 cut(s) | 1471, 2305 |
| BauI | CACGAG | 1 cut(s) | 2577 |
| Bbv12I | GWGCWC | 2 cut(s) | 281, 2856 |
| BbvCI | CCTCAGC | 3 cut(s) | 689, 2553, 3546 |
| BceAI | ACGGC | 4 cut(s) | 143, 169, 382, 3264 |
| BciT130I | CCWGG | 8 cut(s) | 1488, 1791, 2098, 2154, 2474, 2835, 3190, 3363 |
| BciVI | GTATCC | 1 cut(s) | 2841 |
| BclI | TGATCA | 1 cut(s) | 2590 |
| BcoDI | GTCTC | 5 cut(s) | 959, 1988, 2045, 2247, 2634 |
| BfmI | CTRYAG | 7 cut(s) | 326, 628, 1546, 2237, 2306, 3120, 3225 |
| BfoI | RGCGCY | 3 cut(s) | 159, 655, 2460 |
| BfuAI | ACCTGC | 1 cut(s) | 3124 |
| BfuI | GTATCC | 1 cut(s) | 2841 |
| BglII | AGATCT | 1 cut(s) | 2545 |
| Bme1390I | CCNGG | 8 cut(s) | 1488, 1791, 2098, 2154, 2474, 2835, 3190, 3363 |
| Bme18I | GGWCC | 7 cut(s) | 133, 384, 613, 1691, 3286, 3359, 3634 |
| BmeT110I | CYCGRG | 1 cut(s) | 2928 |
| BmgBI | CACGTC | 2 cut(s) | 530, 2144 |
| BmrFI | CCNGG | 8 cut(s) | 1488, 1791, 2098, 2154, 2474, 2835, 3190, 3363 |
| BmsI | GCATC | 9 cut(s) | 748, 967, 1648, 1652, 2010, 2433, 2746, 2806, 3526 |
| BmtI | GCTAGC | 1 cut(s) | 1898 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 247, 279, 1225, 1257, 1433, 1465, 2218, 2250 |
| BpmI | CTGGAG | 3 cut(s) | 1541, 3119, 3374 |
| Bpu10I | CCTNAGC | 3 cut(s) | 689, 2553, 3546 |
| Bpu14I | TTCGAA | 1 cut(s) | 1507 |
| BpuEI | CTTGAG | 1 cut(s) | 1361 |
| Bsa29I | ATCGAT | 1 cut(s) | 2690 |
| BsaAI | YACGTR | 1 cut(s) | 482 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2745 |
| BsaHI | GRCGYC | 4 cut(s) | 156, 652, 836, 2457 |
| BsaWI | WCCGGW | 1 cut(s) | 186 |
| Bse118I | RCCGGY | 1 cut(s) | 135 |
| Bse1I | ACTGG | 8 cut(s) | 1036, 1267, 1290, 1502, 1819, 2480, 3457, 3556 |
| Bse21I | CCTNAGG | 1 cut(s) | 1950 |
| Bse3DI | GCAATG | 3 cut(s) | 81, 792, 3395 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2745 |
| BseBI | CCWGG | 8 cut(s) | 1488, 1791, 2098, 2154, 2474, 2835, 3190, 3363 |
| BseCI | ATCGAT | 1 cut(s) | 2690 |
| BseJI | GATNNNNATC | 1 cut(s) | 2745 |
| BseMI | GCAATG | 3 cut(s) | 81, 792, 3395 |
| BseNI | ACTGG | 8 cut(s) | 1036, 1267, 1290, 1502, 1819, 2480, 3457, 3556 |
| BseRI | GAGGAG | 3 cut(s) | 110, 706, 3020 |
| BseSI | GKGCMC | 1 cut(s) | 2856 |
| BseYI | CCCAGC | 1 cut(s) | 3085 |
| BsgI | GTGCAG | 3 cut(s) | 2829, 3405, 3546 |
| Bsh1236I | CGCG | 4 cut(s) | 125, 393, 412, 2327 |
| Bsh1285I | CGRYCG | 1 cut(s) | 391 |
| BshNI | GGYRCC | 4 cut(s) | 155, 651, 1615, 2456 |
| BshVI | ATCGAT | 1 cut(s) | 2690 |
| BsiEI | CGRYCG | 1 cut(s) | 391 |
| BsiHKAI | GWGCWC | 2 cut(s) | 281, 2856 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2928 |
| BsiSI | CCGG | 2 cut(s) | 136, 187 |
| BsiWI | CGTACG | 1 cut(s) | 150 |
| BslFI | GGGAC | 4 cut(s) | 599, 1250, 1677, 3073 |
| BsmAI | GTCTC | 5 cut(s) | 959, 1988, 2045, 2247, 2634 |
| BsmFI | GGGAC | 4 cut(s) | 599, 1250, 1677, 3073 |
| BsoBI | CYCGRG | 1 cut(s) | 2928 |
| Bsp119I | TTCGAA | 1 cut(s) | 1507 |
| Bsp1286I | GDGCHC | 4 cut(s) | 281, 1471, 2305, 2856 |
| Bsp1407I | TGTACA | 1 cut(s) | 1118 |
| Bsp19I | CCATGG | 2 cut(s) | 1903, 2951 |
| Bsp68I | TCGCGA | 2 cut(s) | 125, 393 |
| BspACI | CCGC | 7 cut(s) | 57, 60, 173, 871, 2327, 2608, 3232 |
| BspDI | ATCGAT | 1 cut(s) | 2690 |
| BspFNI | CGCG | 4 cut(s) | 125, 393, 412, 2327 |
| BspHI | TCATGA | 3 cut(s) | 1336, 3108, 3211 |
| BspMAI | CTGCAG | 5 cut(s) | 330, 1550, 2241, 2310, 3229 |
| BspMI | ACCTGC | 1 cut(s) | 3124 |
| BspOI | GCTAGC | 1 cut(s) | 1898 |
| BspPI | GGATC | 5 cut(s) | 1389, 2471, 2484, 2510, 3258 |
| BspQI | GCTCTTC | 1 cut(s) | 2128 |
| BspT104I | TTCGAA | 1 cut(s) | 1507 |
| BspT107I | GGYRCC | 4 cut(s) | 155, 651, 1615, 2456 |
| BsrDI | GCAATG | 3 cut(s) | 81, 792, 3395 |
| BsrFI | RCCGGY | 1 cut(s) | 135 |
| BsrGI | TGTACA | 1 cut(s) | 1118 |
| BsrI | ACTGG | 8 cut(s) | 1036, 1267, 1290, 1502, 1819, 2480, 3457, 3556 |
| BssAI | RCCGGY | 1 cut(s) | 135 |
| BssNI | GRCGYC | 4 cut(s) | 156, 652, 836, 2457 |
| BssSI | CACGAG | 1 cut(s) | 2577 |
| BssT1I | CCWWGG | 5 cut(s) | 679, 1903, 2106, 2951, 3336 |
| Bst2BI | CACGAG | 1 cut(s) | 2577 |
| Bst2UI | CCWGG | 8 cut(s) | 1488, 1791, 2098, 2154, 2474, 2835, 3190, 3363 |
| Bst4CI | ACNGT | 9 cut(s) | 272, 782, 2392, 2571, 2894, 3132, 3356, 3472, 3590 |
| Bst6I | CTCTTC | 3 cut(s) | 2122, 2128, 3515 |
| BstACI | GRCGYC | 4 cut(s) | 156, 652, 836, 2457 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 596 |
| BstAUI | TGTACA | 1 cut(s) | 1118 |
| BstBAI | YACGTR | 1 cut(s) | 482 |
| BstBI | TTCGAA | 1 cut(s) | 1507 |
| BstC8I | GCNNGC | 8 cut(s) | 559, 881, 1896, 1900, 1977, 2610, 3327, 3503 |
| BstDSI | CCRYGG | 3 cut(s) | 1903, 2951, 3586 |
| BstEII | GGTNACC | 1 cut(s) | 667 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1866 |
| BstFNI | CGCG | 4 cut(s) | 125, 393, 412, 2327 |
| BstH2I | RGCGCY | 3 cut(s) | 159, 655, 2460 |
| BstHHI | GCGC | 4 cut(s) | 158, 654, 1427, 2459 |
| BstMAI | GTCTC | 5 cut(s) | 959, 1988, 2045, 2247, 2634 |
| BstMCI | CGRYCG | 1 cut(s) | 391 |
| BstNI | CCWGG | 8 cut(s) | 1488, 1791, 2098, 2154, 2474, 2835, 3190, 3363 |
| BstNSI | RCATGY | 4 cut(s) | 1719, 1856, 1902, 3607 |
| BstPI | GGTNACC | 1 cut(s) | 667 |
| BstSCI | CCNGG | 8 cut(s) | 1486, 1789, 2096, 2152, 2472, 2833, 3188, 3361 |
| BstSFI | CTRYAG | 7 cut(s) | 326, 628, 1546, 2237, 2306, 3120, 3225 |
| BstSLI | GKGCMC | 1 cut(s) | 2856 |
| BstUI | CGCG | 4 cut(s) | 125, 393, 412, 2327 |
| BstX2I | RGATCY | 4 cut(s) | 1381, 2476, 2515, 2545 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2952 |
| BstYI | RGATCY | 4 cut(s) | 1381, 2476, 2515, 2545 |
| Bsu15I | ATCGAT | 1 cut(s) | 2690 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1950 |
| BsuI | GTATCC | 1 cut(s) | 2841 |
| BsuTUI | ATCGAT | 1 cut(s) | 2690 |
| BtgI | CCRYGG | 3 cut(s) | 1903, 2951, 3586 |
| BtgZI | GCGATG | 3 cut(s) | 140, 164, 393 |
| BtrI | CACGTC | 2 cut(s) | 530, 2144 |
| BtsI | GCAGTG | 2 cut(s) | 617, 3234 |
| BtsIMutI | CAGTG | 6 cut(s) | 617, 1260, 2066, 3234, 3361, 3563 |
| BtuMI | TCGCGA | 2 cut(s) | 125, 393 |
| BveI | ACCTGC | 1 cut(s) | 3124 |
| Cac8I | GCNNGC | 8 cut(s) | 559, 881, 1896, 1900, 1977, 2610, 3327, 3503 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2902, 3545, 3562 |
| CciI | TCATGA | 3 cut(s) | 1336, 3108, 3211 |
| CfoI | GCGC | 4 cut(s) | 158, 654, 1427, 2459 |
| Cfr10I | RCCGGY | 1 cut(s) | 135 |
| ClaI | ATCGAT | 1 cut(s) | 2690 |
| CseI | GACGC | 5 cut(s) | 401, 825, 2072, 2201, 2409 |
| Csp6I | GTAC | 3 cut(s) | 151, 288, 1119 |
| CviQI | GTAC | 3 cut(s) | 151, 288, 1119 |
| DinI | GGCGCC | 3 cut(s) | 157, 653, 2458 |
| DraI | TTTAAA | 3 cut(s) | 2268, 2352, 3144 |
| EaeI | YGGCCR | 1 cut(s) | 3277 |
| Eam1104I | CTCTTC | 3 cut(s) | 2122, 2128, 3515 |
| EarI | CTCTTC | 3 cut(s) | 2122, 2128, 3515 |
| EciI | GGCGGA | 1 cut(s) | 886 |
| Eco130I | CCWWGG | 5 cut(s) | 679, 1903, 2106, 2951, 3336 |
| Eco147I | AGGCCT | 1 cut(s) | 1789 |
| Eco24I | GRGCYC | 2 cut(s) | 1471, 2305 |
| Eco32I | GATATC | 1 cut(s) | 3095 |
| Eco47I | GGWCC | 7 cut(s) | 133, 384, 613, 1691, 3286, 3359, 3634 |
| Eco57I | CTGAAG | 4 cut(s) | 942, 1152, 1859, 3467 |
| Eco81I | CCTNAGG | 1 cut(s) | 1950 |
| Eco88I | CYCGRG | 1 cut(s) | 2928 |
| Eco91I | GGTNACC | 1 cut(s) | 667 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1866 |
| EcoO109I | RGGNCCY | 3 cut(s) | 613, 2364, 3286 |
| EcoO65I | GGTNACC | 1 cut(s) | 667 |
| EcoRI | GAATTC | 1 cut(s) | 2720 |
| EcoRII | CCWGG | 8 cut(s) | 1486, 1789, 2096, 2152, 2472, 2833, 3188, 3361 |
| EcoRV | GATATC | 1 cut(s) | 3095 |
| EcoT14I | CCWWGG | 5 cut(s) | 679, 1903, 2106, 2951, 3336 |
| EcoT22I | ATGCAT | 2 cut(s) | 982, 2782 |
| EcoT38I | GRGCYC | 2 cut(s) | 1471, 2305 |
| EgeI | GGCGCC | 3 cut(s) | 157, 653, 2458 |
| EheI | GGCGCC | 3 cut(s) | 157, 653, 2458 |
| ErhI | CCWWGG | 5 cut(s) | 679, 1903, 2106, 2951, 3336 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1150, 1182, 2432, 2464, 2708, 2740, 3138, 3170 |
| FaqI | GGGAC | 4 cut(s) | 599, 1250, 1677, 3073 |
| FauI | CCCGC | 1 cut(s) | 2601 |
| FauNDI | CATATG | 1 cut(s) | 2059 |
| FbaI | TGATCA | 1 cut(s) | 2590 |
| FblI | GTMKAC | 1 cut(s) | 1396 |
| FriOI | GRGCYC | 2 cut(s) | 1471, 2305 |
| GlaI | GCGC | 4 cut(s) | 157, 653, 1426, 2458 |
| GsaI | CCCAGC | 1 cut(s) | 3089 |
| GsuI | CTGGAG | 3 cut(s) | 1541, 3119, 3374 |
| HaeII | RGCGCY | 3 cut(s) | 159, 655, 2460 |
| HapII | CCGG | 2 cut(s) | 136, 187 |
| HgaI | GACGC | 5 cut(s) | 401, 825, 2072, 2201, 2409 |
| HhaI | GCGC | 4 cut(s) | 158, 654, 1427, 2459 |
| Hin1I | GRCGYC | 4 cut(s) | 156, 652, 836, 2457 |
| Hin6I | GCGC | 4 cut(s) | 156, 652, 1425, 2457 |
| HinP1I | GCGC | 4 cut(s) | 156, 652, 1425, 2457 |
| HincII | GTYRAC | 2 cut(s) | 987, 1397 |
| HindII | GTYRAC | 2 cut(s) | 987, 1397 |
| HindIII | AAGCTT | 3 cut(s) | 877, 903, 3046 |
| HpaII | CCGG | 2 cut(s) | 136, 187 |
| Hpy166II | GTNNAC | 7 cut(s) | 163, 987, 1121, 1397, 2854, 2983, 3359 |
| Hpy8I | GTNNAC | 7 cut(s) | 163, 987, 1121, 1397, 2854, 2983, 3359 |
| Hpy99I | CGWCG | 4 cut(s) | 276, 365, 368, 1398 |
| HpyCH4III | ACNGT | 9 cut(s) | 272, 782, 2392, 2571, 2894, 3132, 3356, 3472, 3590 |
| HpyCH4IV | ACGT | 5 cut(s) | 165, 481, 529, 1342, 2143 |
| HpySE526I | ACGT | 5 cut(s) | 165, 481, 529, 1342, 2143 |
| Hsp92I | GRCGYC | 4 cut(s) | 156, 652, 836, 2457 |
| HspAI | GCGC | 4 cut(s) | 156, 652, 1425, 2457 |
| KasI | GGCGCC | 3 cut(s) | 155, 651, 2456 |
| Ksp22I | TGATCA | 1 cut(s) | 2590 |
| LguI | GCTCTTC | 1 cut(s) | 2128 |
| LmnI | GCTCC | 8 cut(s) | 239, 246, 276, 319, 1097, 2425, 3033, 3393 |
| LweI | GCATC | 9 cut(s) | 748, 967, 1648, 1652, 2010, 2433, 2746, 2806, 3526 |
| MaeII | ACGT | 5 cut(s) | 165, 481, 529, 1342, 2143 |
| MaeIII | GTNAC | 9 cut(s) | 477, 482, 667, 1309, 1848, 2310, 2319, 2565, 3590 |
| MfeI | CAATTG | 2 cut(s) | 228, 2210 |
| MflI | RGATCY | 4 cut(s) | 1381, 2476, 2515, 2545 |
| MhlI | GDGCHC | 4 cut(s) | 281, 1471, 2305, 2856 |
| Mly113I | GGCGCC | 3 cut(s) | 156, 652, 2457 |
| MlyI | GAGTC | 7 cut(s) | 301, 412, 705, 1693, 1893, 3014, 3391 |
| MmeI | TCCRAC | 3 cut(s) | 254, 440, 1700 |
| Mph1103I | ATGCAT | 2 cut(s) | 982, 2782 |
| MroXI | GAANNNNTTC | 7 cut(s) | 750, 861, 1089, 1359, 2281, 2720, 3049 |
| MslI | CAYNNNNRTG | 4 cut(s) | 585, 1341, 2950, 3608 |
| MspA1I | CMGCKG | 4 cut(s) | 325, 886, 3011, 3545 |
| MspI | CCGG | 2 cut(s) | 136, 187 |
| MspR9I | CCNGG | 8 cut(s) | 1488, 1791, 2098, 2154, 2474, 2835, 3190, 3363 |
| MssI | GTTTAAAC | 1 cut(s) | 2268 |
| MunI | CAATTG | 2 cut(s) | 228, 2210 |
| MvaI | CCWGG | 8 cut(s) | 1488, 1791, 2098, 2154, 2474, 2835, 3190, 3363 |
| MvnI | CGCG | 4 cut(s) | 125, 393, 412, 2327 |
| NarI | GGCGCC | 3 cut(s) | 156, 652, 2457 |
| NcoI | CCATGG | 2 cut(s) | 1903, 2951 |
| NdeI | CATATG | 1 cut(s) | 2059 |
| NheI | GCTAGC | 1 cut(s) | 1894 |
| NmeAIII | GCCGAG | 1 cut(s) | 1907 |
| NmuCI | GTSAC | 4 cut(s) | 482, 667, 2310, 2565 |
| NruI | TCGCGA | 2 cut(s) | 125, 393 |
| NsiI | ATGCAT | 2 cut(s) | 982, 2782 |
| NspI | RCATGY | 4 cut(s) | 1719, 1856, 1902, 3607 |
| NspV | TTCGAA | 1 cut(s) | 1507 |
| PaeI | GCATGC | 1 cut(s) | 1902 |
| PagI | TCATGA | 3 cut(s) | 1336, 3108, 3211 |
| PceI | AGGCCT | 1 cut(s) | 1789 |
| PciI | ACATGT | 1 cut(s) | 3603 |
| PciSI | GCTCTTC | 1 cut(s) | 2128 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 366 |
| PdmI | GAANNNNTTC | 7 cut(s) | 750, 861, 1089, 1359, 2281, 2720, 3049 |
| Pfl23II | CGTACG | 1 cut(s) | 150 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2435, 3558, 3562 |
| PfoI | TCCNGGA | 2 cut(s) | 2096, 2833 |
| Ple19I | CGATCG | 1 cut(s) | 391 |
| PleI | GAGTC | 7 cut(s) | 301, 412, 704, 1693, 1892, 3014, 3390 |
| PluTI | GGCGCC | 3 cut(s) | 159, 655, 2460 |
| PmeI | GTTTAAAC | 1 cut(s) | 2268 |
| PpsI | GAGTC | 7 cut(s) | 301, 412, 704, 1693, 1892, 3014, 3390 |
| Ppu21I | YACGTR | 1 cut(s) | 482 |
| PpuMI | RGGWCCY | 2 cut(s) | 613, 3286 |
| PscI | ACATGT | 1 cut(s) | 3603 |
| PshBI | ATTAAT | 1 cut(s) | 2010 |
| Psp5II | RGGWCCY | 2 cut(s) | 613, 3286 |
| Psp6I | CCWGG | 8 cut(s) | 1486, 1789, 2096, 2152, 2472, 2833, 3188, 3361 |
| PspEI | GGTNACC | 1 cut(s) | 667 |
| PspFI | CCCAGC | 1 cut(s) | 3085 |
| PspGI | CCWGG | 8 cut(s) | 1486, 1789, 2096, 2152, 2472, 2833, 3188, 3361 |
| PspLI | CGTACG | 1 cut(s) | 150 |
| PspPPI | RGGWCCY | 2 cut(s) | 613, 3286 |
| PstI | CTGCAG | 5 cut(s) | 330, 1550, 2241, 2310, 3229 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2902, 3545, 3562 |
| PsuI | RGATCY | 4 cut(s) | 1381, 2476, 2515, 2545 |
| PvuI | CGATCG | 1 cut(s) | 391 |
| PvuII | CAGCTG | 4 cut(s) | 325, 886, 3011, 3545 |
| RruI | TCGCGA | 2 cut(s) | 125, 393 |
| RsaI | GTAC | 3 cut(s) | 152, 289, 1120 |
| RsaNI | GTAC | 3 cut(s) | 151, 288, 1119 |
| RseI | CAYNNNNRTG | 4 cut(s) | 585, 1341, 2950, 3608 |
| SalI | GTCGAC | 1 cut(s) | 1395 |
| SapI | GCTCTTC | 1 cut(s) | 2128 |
| SchI | GAGTC | 7 cut(s) | 301, 412, 705, 1693, 1893, 3014, 3391 |
| ScrFI | CCNGG | 8 cut(s) | 1488, 1791, 2098, 2154, 2474, 2835, 3190, 3363 |
| SduI | GDGCHC | 4 cut(s) | 281, 1471, 2305, 2856 |
| SfaNI | GCATC | 9 cut(s) | 748, 967, 1648, 1652, 2010, 2433, 2746, 2806, 3526 |
| SfcI | CTRYAG | 7 cut(s) | 326, 628, 1546, 2237, 2306, 3120, 3225 |
| SfoI | GGCGCC | 3 cut(s) | 157, 653, 2458 |
| SfuI | TTCGAA | 1 cut(s) | 1507 |
| SinI | GGWCC | 7 cut(s) | 133, 384, 613, 1691, 3286, 3359, 3634 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 585, 1341, 2950, 3608 |
| SmlI | CTYRAG | 1 cut(s) | 1376 |
| SmoI | CTYRAG | 1 cut(s) | 1376 |
| SphI | GCATGC | 1 cut(s) | 1902 |
| SseBI | AGGCCT | 1 cut(s) | 1789 |
| SsiI | CCGC | 7 cut(s) | 57, 60, 173, 871, 2327, 2608, 3232 |
| SspDI | GGCGCC | 3 cut(s) | 155, 651, 2456 |
| SspI | AATATT | 2 cut(s) | 1938, 1987 |
| StuI | AGGCCT | 1 cut(s) | 1789 |
| StyD4I | CCNGG | 8 cut(s) | 1486, 1789, 2096, 2152, 2472, 2833, 3188, 3361 |
| StyI | CCWWGG | 5 cut(s) | 679, 1903, 2106, 2951, 3336 |
| TaaI | ACNGT | 9 cut(s) | 272, 782, 2392, 2571, 2894, 3132, 3356, 3472, 3590 |
| TaiI | ACGT | 5 cut(s) | 168, 484, 532, 1345, 2146 |
| TaqI | TCGA | 6 cut(s) | 642, 699, 1396, 1507, 2690, 2912 |
| TatI | WGTACW | 1 cut(s) | 1118 |
| TauI | GCSGC | 2 cut(s) | 59, 62 |
| TscAI | CASTG | 6 cut(s) | 624, 1267, 2073, 3234, 3361, 3563 |
| TseFI | GTSAC | 4 cut(s) | 482, 667, 2310, 2565 |
| Tsp45I | GTSAC | 4 cut(s) | 482, 667, 2310, 2565 |
| TspGWI | ACGGA | 5 cut(s) | 233, 475, 1015, 2795, 3498 |
| TspRI | CASTG | 6 cut(s) | 624, 1267, 2073, 3234, 3361, 3563 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2435, 3558, 3562 |
| VneI | GTGCAC | 1 cut(s) | 2852 |
| VpaK11BI | GGWCC | 7 cut(s) | 133, 384, 613, 1691, 3286, 3359, 3634 |
| VspI | ATTAAT | 1 cut(s) | 2010 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1866 |
| XapI | RAATTY | 8 cut(s) | 716, 1053, 1297, 1332, 2220, 2720, 2838, 2940 |
| XbaI | TCTAGA | 2 cut(s) | 770, 1069 |
| XceI | RCATGY | 4 cut(s) | 1719, 1856, 1902, 3607 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3559 |
| XmiI | GTMKAC | 1 cut(s) | 1396 |
| XmnI | GAANNNNTTC | 7 cut(s) | 750, 861, 1089, 1359, 2281, 2720, 3049 |
| Zsp2I | ATGCAT | 2 cut(s) | 982, 2782 |