pycom14g02420

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0005622
Physical Location & Seq
Forward (+)
1900859 .. 1901290
432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g02420.1

Sequence Viewer

Length: 432 bp
ATGGTAAGTCTTTTTCACAGTTCTATATCCTTCAATTGGTTCTTCTCTCTGCAATTCGCTCACGCGTCGTCGCTTTCACATACAAAACCCATTGCCTCATTCTCCACACCATCACTCCTGGCGATGAATGACCAGCCTCCTTCCTCATACGACTCCATCTACGTCCCTCCCCACCACCTCCTCTGCTCTGTCATCACTATCCCCAATTATACCTCCCCTGCAATCGGCTCCAAGTTCCGCGAAACCAGACTGCTGCTGCCGCTGCTATTCTCAATCGGAGGAGCAGCACAAGTGGTGTTCTGGCGTACAACTAGACTCAACAGCAGCAGGCGCAGTTGCAAAAGCTCAAGCTTCAGCAGCCTTCTGCTTAAGACGACGGCGTTTCTGAAGAAGGCTCTGATCGTGAAGCTGAGTTGTAGTCGCATTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001047 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042221 GO:0042623 GO:0042826 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043330 GO:0043331 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind dsrm

Protein Analysis

144

Amino Acids

15.9

Weight (kDa)

10.55

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 65, 240
AciI CCGC 2 cut(s) 238, 260
AcuI CTGAAG 2 cut(s) 337, 407
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 36, 224
AflII CTTAAG 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 3 cut(s) 345, 351, 409
AluI AGCT 3 cut(s) 345, 351, 409
ApeKI GCWGC 6 cut(s) 253, 256, 262, 284, 324, 357
AspLEI GCGC 1 cut(s) 333
BbvI GCAGC 6 cut(s) 240, 243, 249, 296, 336, 369
BccI CCATC 2 cut(s) 118, 164
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 368
BisI GCNGC 7 cut(s) 254, 257, 260, 263, 285, 325, 358
BlsI GCNGC 7 cut(s) 255, 258, 261, 264, 286, 326, 359
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 224
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 36, 224
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 401
BseRI GAGGAG 2 cut(s) 170, 294
BseXI GCAGC 6 cut(s) 240, 243, 249, 296, 336, 369
Bsh1236I CGCG 2 cut(s) 65, 240
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 36, 224
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 423
Bsp143I GATC 1 cut(s) 399
BspACI CCGC 2 cut(s) 238, 260
BspCNI CTCAG 1 cut(s) 402
BspFNI CGCG 2 cut(s) 65, 240
BspLI GGNNCC 1 cut(s) 229
BspTI CTTAAG 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 90
BssMI GATC 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 1 cut(s) 410
BstFNI CGCG 2 cut(s) 65, 240
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 1 cut(s) 402
BstMBI GATC 1 cut(s) 399
BstMWI GCNNNNNNNGC 4 cut(s) 259, 262, 330, 357
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstUI CGCG 2 cut(s) 65, 240
BstV1I GCAGC 6 cut(s) 240, 243, 249, 296, 336, 369
BtgZI GCGATG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 329
CfoI GCGC 1 cut(s) 333
CseI GACGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 306
CviJI RGCY 7 cut(s) 136, 228, 345, 351, 360, 395, 409
CviKI_1 RGCY 7 cut(s) 136, 228, 345, 351, 360, 395, 409
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 1 cut(s) 410
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
Eco57I CTGAAG 2 cut(s) 337, 407
EcoRII CCWGG 1 cut(s) 117
FaiI YATR 4 cut(s) 26, 81, 148, 210
FaqI GGGAC 1 cut(s) 149
Fnu4HI GCNGC 7 cut(s) 254, 257, 260, 263, 285, 325, 358
Fsp4HI GCNGC 7 cut(s) 254, 257, 260, 263, 285, 325, 358
FspBI CTAG 1 cut(s) 312
GlaI GCGC 1 cut(s) 332
GluI GCNGC 7 cut(s) 254, 257, 260, 263, 285, 325, 358
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 333
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 2 cut(s) 152, 315
Hpy188I TCNGA 3 cut(s) 278, 387, 399
Hpy188III TCNNGA 1 cut(s) 403
Hpy99I CGWCG 3 cut(s) 70, 73, 379
HpyAV CCTTC 4 cut(s) 40, 150, 371, 385
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 52, 221, 339
HpyF10VI GCNNNNNNNGC 4 cut(s) 259, 262, 330, 357
HpyF3I CTNAG 1 cut(s) 410
HpySE526I ACGT 1 cut(s) 162
HspAI GCGC 1 cut(s) 331
Kzo9I GATC 1 cut(s) 399
LmnI GCTCC 2 cut(s) 233, 281
LpnPI CCDG 7 cut(s) 104, 131, 146, 231, 259, 286, 313
Lsp1109I GCAGC 6 cut(s) 240, 243, 249, 296, 336, 369
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 162
MalI GATC 1 cut(s) 401
MboI GATC 1 cut(s) 399
MboII GAAGA 2 cut(s) 34, 400
MfeI CAATTG 1 cut(s) 34
MluCI AATT 3 cut(s) 34, 53, 205
MluI ACGCGT 1 cut(s) 63
MlyI GAGTC 2 cut(s) 146, 309
MnlI CCTC 8 cut(s) 106, 147, 154, 177, 188, 191, 223, 272
MseI TTAA 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 262
MspCI CTTAAG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 2 cut(s) 65, 240
MwoI GCNNNNNNNGC 4 cut(s) 259, 262, 330, 357
NdeII GATC 1 cut(s) 399
NlaIV GGNNCC 1 cut(s) 229
PctI GAATGC 1 cut(s) 423
PkrI GCNGC 7 cut(s) 255, 258, 261, 264, 286, 326, 359
PleI GAGTC 2 cut(s) 146, 309
PpsI GAGTC 2 cut(s) 146, 309
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 229
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 7 cut(s) 254, 257, 260, 263, 285, 325, 358
Sau3AI GATC 1 cut(s) 399
SchI GAGTC 2 cut(s) 146, 309
ScrFI CCNGG 1 cut(s) 119
SetI ASST 6 cut(s) 165, 180, 215, 347, 353, 411
SmlI CTYRAG 2 cut(s) 346, 368
SmoI CTYRAG 2 cut(s) 346, 368
Sse9I AATT 3 cut(s) 34, 53, 205
SsiI CCGC 2 cut(s) 238, 260
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 165
TasI AATT 3 cut(s) 34, 53, 205
TauI GCSGC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseI GCWGC 6 cut(s) 253, 256, 262, 284, 324, 357
TspDTI ATGAA 1 cut(s) 140
Vha464I CTTAAG 1 cut(s) 368
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.