Rorug04G0273300

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005622
Physical Location & Seq
Reverse (-)
44585310 .. 44586035
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0273300.1

Sequence Viewer

Length: 483 bp
ATGGGTGTGTTCACATACGAAACTGAGTTCACCTCCGTGATTCCACCACCAAGATTGTACAAGGCATTTGTTCTCGATGCTGACAACCTCATCCCCAAGATTGCCCCACAGGCTGTGAAGAGTGCCGAAATCATTCAAGGTGATGGAGGTGTTGGAACCGTCAAGAAGATCCACCTCGGTGAAGGAAGCGAATACAGTTACGTGAAGCATCAGATTGATGGACTTGACAAAGACAACTTTGTTTACAACTACAGCATAATCGAAGGTGATGCTATCGGAGACAAAGTTGAGAAAATCTCTTACGAGATTAAGTTAGTGGCATCTCCAAGTGGAGGCTCCATCATCAAGAGCACCAGCCACTACCATTGCAAAGGTGAGGTTGAGATCAAGGAAGAGCACGTCAAGGCCGGAAAAGAAAGAGCCGCTGGTTTGTTCAAGATCATTGAGAACCACCTTTTGGCCAACCCTGAGGCCTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001047 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042221 GO:0042623 GO:0042826 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043330 GO:0043331 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind dsrm

Protein Analysis

160

Amino Acids

17.55

Weight (kDa)

5.68

Isoelectric Point (pI)

24.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 155 1.8e-22 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 457
AciI CCGC 1 cut(s) 423
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 459
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 332, 457
AgsI TTSAA 2 cut(s) 137, 436
AjiI CACGTC 1 cut(s) 400
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AleI CACNNNNGTG 2 cut(s) 35, 177
Alw21I GWGCWC 2 cut(s) 353, 399
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 163
AoxI GGCC 3 cut(s) 405, 459, 471
Asp700I GAANNNNTTC 1 cut(s) 132
AsuHPI GGTGA 5 cut(s) 22, 152, 191, 278, 386
AxyI CCTNAGG 1 cut(s) 468
BalI TGGCCA 1 cut(s) 461
Bbv12I GWGCWC 2 cut(s) 353, 399
BccI CCATC 3 cut(s) 137, 212, 347
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 250
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
BmgBI CACGTC 1 cut(s) 400
BmiI GGNNCC 2 cut(s) 157, 337
BmsI GCATC 4 cut(s) 67, 217, 259, 329
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 281, 313
BsaAI YACGTR 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 457
Bse21I CCTNAGG 1 cut(s) 468
Bse3DI GCAATG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 332, 457
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 2 cut(s) 15, 459
BshFI GGCC 3 cut(s) 407, 461, 473
BsiHKAI GWGCWC 2 cut(s) 353, 399
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 332, 457
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 3 cut(s) 407, 461, 473
Bsp1286I GDGCHC 2 cut(s) 353, 399
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 3 cut(s) 168, 384, 438
BspACI CCGC 1 cut(s) 423
BspANI GGCC 3 cut(s) 407, 461, 473
BspCNI CTCAG 2 cut(s) 16, 460
BspLI GGNNCC 2 cut(s) 157, 337
BspPI GGATC 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 364
BsrGI TGTACA 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 3 cut(s) 168, 384, 438
Bst4CI ACNGT 2 cut(s) 160, 197
Bst6I CTCTTC 2 cut(s) 113, 387
BstAUI TGTACA 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 24, 468
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 3 cut(s) 171, 387, 441
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 3 cut(s) 168, 384, 438
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 3 cut(s) 407, 461, 473
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 1 cut(s) 90
Csp6I GTAC 1 cut(s) 58
CspCI CAANNNNNGTGG 4 cut(s) 36, 71, 347, 382
CviJI RGCY 7 cut(s) 113, 336, 357, 407, 422, 461, 473
CviKI_1 RGCY 7 cut(s) 113, 336, 357, 407, 422, 461, 473
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 2 cut(s) 24, 468
DpnI GATC 3 cut(s) 170, 386, 440
DpnII GATC 3 cut(s) 168, 384, 438
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 2 cut(s) 113, 387
EarI CTCTTC 2 cut(s) 113, 387
Eco147I AGGCCT 1 cut(s) 473
Eco81I CCTNAGG 1 cut(s) 468
FaiI YATR 2 cut(s) 16, 257
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 423
GluI GCNGC 1 cut(s) 423
HaeIII GGCC 3 cut(s) 407, 461, 473
HapII CCGG 1 cut(s) 408
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 408
HphI GGTGA 5 cut(s) 22, 152, 191, 278, 386
Hpy166II GTNNAC 3 cut(s) 12, 30, 244
Hpy188I TCNGA 2 cut(s) 213, 278
Hpy188III TCNNGA 4 cut(s) 74, 163, 346, 436
Hpy8I GTNNAC 3 cut(s) 12, 30, 244
HpyAV CCTTC 2 cut(s) 176, 257
HpyCH4III ACNGT 2 cut(s) 160, 197
HpyCH4IV ACGT 2 cut(s) 201, 399
HpyCH4V TGCA 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 24, 468
HpySE526I ACGT 2 cut(s) 201, 399
Kzo9I GATC 3 cut(s) 168, 384, 438
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 4 cut(s) 95, 367, 411, 421
LweI GCATC 4 cut(s) 67, 217, 259, 329
MaeII ACGT 2 cut(s) 201, 399
MaeIII GTNAC 1 cut(s) 197
MalI GATC 3 cut(s) 170, 386, 440
MboI GATC 3 cut(s) 168, 384, 438
MboII GAAGA 3 cut(s) 130, 178, 404
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 2 cut(s) 353, 399
MlsI TGGCCA 1 cut(s) 461
MluNI TGGCCA 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 7 cut(s) 43, 98, 140, 185, 326, 370, 463
Mox20I TGGCCA 1 cut(s) 461
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 461
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 2 cut(s) 35, 177
Msp20I TGGCCA 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 408
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 3 cut(s) 168, 384, 438
NlaIV GGNNCC 2 cut(s) 157, 337
OliI CACNNNNGTG 2 cut(s) 35, 177
PceI AGGCCT 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 457
PkrI GCNGC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 157, 337
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 2 cut(s) 35, 177
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 3 cut(s) 168, 384, 438
SduI GDGCHC 2 cut(s) 353, 399
SfaNI GCATC 4 cut(s) 67, 217, 259, 329
SfcI CTRYAG 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 35, 177
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 1 cut(s) 423
StuI AGGCCT 1 cut(s) 473
TaaI ACNGT 2 cut(s) 160, 197
TaiI ACGT 2 cut(s) 204, 402
TaqI TCGA 2 cut(s) 75, 261
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TspGWI ACGGA 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.